wanshuiyin/Auto-claude-code-research-in-sleep

14.2

Adjusted Score

14.2

Raw Score

100%

Time Factor

2026-07-14

Last Push

13.4K

Stars

Python

Language

249.3K

Lines of Code

603

Files

2.0K

Pattern Hits

2026-07-14

Scan Date

0.13

HC Hit Rate

What These Metrics Mean

Adjusted Score: Primary synthetic code indicator. Raw score normalised per 1,000 lines of code and multiplied by the temporal discount factor. This is the definitive comparative metric — use it to rank repositories by AI authorship density.
Raw Score: The unmodified sum of all severity-weighted, context-multiplied pattern match scores before temporal discounting. Reflects the absolute signal strength independent of when the repository was last active.
Time Factor: The temporal discount multiplier (0–100%) applied to the raw score. Repositories last updated before ChatGPT's launch (Nov 2022) receive a 5% factor. Full signal is only assigned to repositories active in the post-adoption era (Jan 2024+).
Pattern Hits: Total count of individual pattern matches across all files and categories. A high hit count with a low score may indicate a very large codebase with isolated AI snippets; a low count with a high score indicates dense, concentrated AI signatures.
HC Hit Rate: High+Critical pattern hits per file, averaged across the repository. This orthogonal signal catches repositories where a few files are densely packed with high-severity AI tells — a strong indicator even when the normalised score appears moderate due to codebase size.
Lines of Code / Files: Total lines and files analysed. The scanner examines 94 file extensions. These denominators are used to normalise the score, enabling fair comparison between repositories of vastly different sizes.

Score History

This chart maps the temporal evolution of the adjusted synthetic code score across successive scan runs. An upward trajectory indicates ongoing incorporation of AI-generated code or expanding LLM-assisted scaffolding; a stable or declining trajectory may reflect active human refactoring, code removal, or the adoption of stricter authorship policies. The dashed secondary line (right axis) independently tracks total raw pattern hit count, which can diverge from the normalised score when codebase size changes significantly between scans.

Severity Breakdown

Classifies detected patterns by their diagnostic confidence and structural impact. CRITICAL patterns (coefficient 10) represent definitive synthetic signatures — hallucinated imports, explicit LLM attribution metadata — virtually never produced by human authors. HIGH (5) indicates strong structural tells such as cross-file repetition or cross-linguistic idioms. MEDIUM (2) covers recognisable conversational padding and AI-specific vocabulary. LOW (1) captures subtle indicators like tautological comments and generic boilerplate that require density to carry independent signal.

CRITICAL 0HIGH 77MEDIUM 377LOW 1538

Directory Score Breakdown

This horizontal bar chart decomposes the repository's raw synthetic code score by top-level directory, allowing you to pinpoint precisely which modules or components carry the highest AI authorship density. Directories with disproportionately high scores relative to their size warrant targeted manual review: concentrated AI signatures often trace back to mass-generated configuration layers, auto-ported test suites, LLM-scaffolded boilerplate classes, or entire subsystems authored under heavy copilot assistance. Use this view to prioritise your human code-review effort.

Pattern Findings

The scanner identified 1992 distinct pattern matches across 21 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a statistically significant AI authorship indicator. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.

Reading the findings table: The Severity column indicates the diagnostic confidence level (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — comment-context matches receive a ×1.5 weight because LLMs systematically over-annotate. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier as dense clusters constitute far stronger evidence of synthetic authorship than isolated hits.

Structural Annotation Overuse723 hits · 1164 pts

Severity	File	Line	Snippet	Context
LOW	SETUP_GUIDE.md	11	## Step 1: Install Required Tools	COMMENT
LOW	SETUP_GUIDE.md	57	## Step 2: Create a Research Project	COMMENT
LOW	SETUP_GUIDE.md	69	## Step 3: Install Skills	COMMENT
LOW	SETUP_GUIDE.md	115	## Step 4: Configure GPU Server	COMMENT
LOW	SETUP_GUIDE.md	170	## Step 5: Initialize Research Wiki	COMMENT
LOW	SETUP_GUIDE.md	195	## Step 6: Verify	COMMENT
LOW⚡	tests/test_minimax_integration.py	33	# Step 1: Initialize	COMMENT
LOW⚡	tests/test_minimax_integration.py	42	# Step 2: Notification (no response expected)	COMMENT
LOW⚡	tests/test_minimax_integration.py	49	# Step 3: List tools	COMMENT
LOW⚡	docs/OPENROUTER_GUIDE.md	75	### Step 1: Clone ARIS	COMMENT
LOW⚡	docs/OPENROUTER_GUIDE.md	82	### Step 2: Install Python Dependencies	COMMENT
LOW⚡	docs/OPENROUTER_GUIDE.md	88	### Step 3: Install ARIS Skills with the Standard Installer	COMMENT
LOW⚡	docs/OPENROUTER_GUIDE.md	97	### Step 4: Deploy the llm-chat MCP Server	COMMENT
LOW⚡	docs/OPENROUTER_GUIDE.md	106	### Step 5: Configure `~/.claude/settings.json`	COMMENT
LOW	docs/integrations/FEISHU.md	28	### Step 1: Create a Feishu group bot	COMMENT
LOW	docs/integrations/FEISHU.md	35	### Step 2: Create config file	COMMENT
LOW	docs/integrations/FEISHU.md	46	### Step 3: Test it	COMMENT
LOW	docs/integrations/FEISHU.md	79	### Step 1: Complete Push setup above first (you'll keep both)	COMMENT
LOW	docs/integrations/FEISHU.md	81	### Step 2: Create a Feishu app on [open.feishu.cn](https://open.feishu.cn/app)	COMMENT
LOW	docs/integrations/FEISHU.md	103	### Step 3: Deploy the bridge	COMMENT
LOW	docs/integrations/FEISHU.md	142	### Step 4: Save event config	COMMENT
LOW	docs/integrations/FEISHU.md	148	### Step 5: Test private chat	COMMENT
LOW	docs/integrations/FEISHU.md	164	### Step 6: Update ARIS config	COMMENT
LOW	skills/meta-apply/SKILL.md	52	### Step 0: Load staging + resolve the helper	COMMENT
LOW	skills/meta-apply/SKILL.md	65	### Step 1: Jury-at-landing for each requested patch	COMMENT
LOW	skills/meta-apply/SKILL.md	76	### Step 2: Land the survivors (Write/Edit only — never Bash)	COMMENT
LOW	skills/meta-apply/SKILL.md	96	### Step 3: Report	COMMENT
LOW	skills/paper-write/SKILL.md	170	### Step 0: Backup and Clean	COMMENT
LOW	skills/paper-write/SKILL.md	176	### Step 1: Initialize Project	COMMENT
LOW	skills/paper-write/SKILL.md	191	### Step 2: Generate math_commands.tex	COMMENT
LOW	skills/paper-write/SKILL.md	204	### Step 3: Write Each Section	COMMENT
LOW	skills/paper-write/SKILL.md	307	### Step 4: Build Bibliography	COMMENT
LOW	skills/paper-write/SKILL.md	459	### Step 5: Scientific Writing Quality Pass (5 audit passes)	COMMENT
LOW	skills/paper-write/SKILL.md	520	### Step 6: Cross-Review with REVIEWER_MODEL	COMMENT
LOW	skills/paper-write/SKILL.md	548	### Step 7: Reverse Outline Test (from Research-Paper-Writing-Skills)	COMMENT
LOW	skills/paper-write/SKILL.md	558	### Step 8: Final Checks	COMMENT
LOW	skills/specification-writing/SKILL.md	36	### Step 1: Initialize Specification Structure	COMMENT
LOW⚡	skills/specification-writing/SKILL.md	51	### Step 2: Write Title (发明名称)	COMMENT
LOW⚡	skills/specification-writing/SKILL.md	59	### Step 3: Write Technical Field (技术领域)	COMMENT
LOW⚡	skills/specification-writing/SKILL.md	65	### Step 4: Write Background (背景技术)	COMMENT
LOW	skills/specification-writing/SKILL.md	78	### Step 5: Write Summary (发明内容)	COMMENT
LOW	skills/specification-writing/SKILL.md	99	### Step 6: Write Brief Description of Drawings (附图说明)	COMMENT
LOW	skills/specification-writing/SKILL.md	112	### Step 7: Write Detailed Description (具体实施方式)	COMMENT
LOW	skills/specification-writing/SKILL.md	125	### Step 8: Write Abstract (摘要)	COMMENT
LOW	skills/specification-writing/SKILL.md	141	### Step 9: Claim Support Verification	COMMENT
LOW	skills/specification-writing/SKILL.md	153	### Step 10: Cross-Model Review	COMMENT
LOW	skills/specification-writing/SKILL.md	175	### Step 11: Output	COMMENT
LOW	skills/proof-writer/SKILL.md	40	### Step 1: Gather Proof Context	COMMENT
LOW	skills/proof-writer/SKILL.md	57	### Step 2: Normalize the Claim	COMMENT
LOW	skills/proof-writer/SKILL.md	72	### Step 3: Feasibility Triage	COMMENT
LOW	skills/proof-writer/SKILL.md	87	### Step 4: Build a Dependency Map	COMMENT
LOW	skills/proof-writer/SKILL.md	106	### Step 5: Write the Proof Document	COMMENT
LOW	skills/proof-writer/SKILL.md	137	### Step 6: Final Verification	COMMENT
LOW	skills/paper-claim-audit/SKILL.md	57	### Step 1: Collect Files (Executor — Claude)	COMMENT
LOW	skills/paper-claim-audit/SKILL.md	87	### Step 2: Fresh Reviewer Audit (GPT-5.6-Sol — NEW thread, no reply)	COMMENT
LOW	skills/paper-claim-audit/SKILL.md	166	### Step 3: Write Report (Executor — Claude)	COMMENT
LOW	skills/paper-claim-audit/SKILL.md	206	### Step 4: Print Summary	COMMENT
LOW	skills/serverless-modal/SKILL.md	92	### Step 1: Analyze Task → Estimate Cost → Choose GPU	COMMENT
LOW	skills/serverless-modal/SKILL.md	105	### Step 2: Generate Modal Launcher	COMMENT
LOW⚡	skills/serverless-modal/SKILL.md	242	### Step 3: Run	COMMENT
663 more matches not shown…

Decorative Section Separators289 hits · 844 pts

Severity	File	Line	Snippet	Context
MEDIUM	tools/smart_update_copilot.sh	156	# ─── New-skill confirmation state (declined list + group catalog lookup) ──────	COMMENT
MEDIUM⚡	tools/overleaf_setup.sh	17	# ── Refuse to run from a non-interactive context (i.e. inside an agent) ────────	COMMENT
MEDIUM⚡	tools/overleaf_setup.sh	25	# ── Args ──────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/overleaf_setup.sh	51	# ── Read token securely (no echo, never enters shell history) ─────────────────	COMMENT
MEDIUM⚡	tools/overleaf_setup.sh	67	# ── Clone with token in URL (transient) ───────────────────────────────────────	COMMENT
MEDIUM⚡	tools/overleaf_setup.sh	76	# ── Immediately strip token from remote URL ───────────────────────────────────	COMMENT
MEDIUM⚡	tools/overleaf_setup.sh	80	# ── Configure credential helper ───────────────────────────────────────────────	COMMENT
MEDIUM⚡	tools/overleaf_setup.sh	90	# ── Prime credential storage so future pull/push is auth-free ─────────────────	COMMENT
MEDIUM⚡	tools/overleaf_setup.sh	99	# ── Clear token from memory ───────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tools/overleaf_setup.sh	102	# ── Install hard-block pre-commit hook ────────────────────────────────────────	COMMENT
MEDIUM	tools/overleaf_setup.sh	120	# ── Verify token was actually stripped from remote ────────────────────────────	COMMENT
MEDIUM	tools/overleaf_setup.sh	128	# ── Set local commit identity (best-effort) ───────────────────────────────────	COMMENT
MEDIUM	tools/overleaf_setup.sh	139	# ── Final report ──────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/watchdog.py	60	# ── Task registration ────────────────────────────────────────────	COMMENT
MEDIUM	tools/watchdog.py	135	# ── Session checks (tmux + screen) ──────────────────────────────	COMMENT
MEDIUM	tools/watchdog.py	153	# ── GPU checks ───────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tools/watchdog.py	168	# ── File size checks ─────────────────────────────────────────────	COMMENT
MEDIUM⚡	tools/watchdog.py	182	# ── Task checking logic ─────────────────────────────────────────	COMMENT
MEDIUM	tools/watchdog.py	270	# ── Loop-liveness check (detect-only) ───────────────────────────	COMMENT
MEDIUM	tools/watchdog.py	337	# ── Status output ────────────────────────────────────────────────	COMMENT
MEDIUM	tools/watchdog.py	388	# ── Main loop ────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/watchdog.py	438	# ── CLI ──────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/smart_update.sh	39	# ─── Parse arguments ───────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/smart_update.sh	94	# ─── Resolve paths ─────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/smart_update.sh	227	# ─── Stale-pristine detection ──────────────────────────────────────────────────	COMMENT
MEDIUM	tools/smart_update.sh	241	# ─── New-skill confirmation state (declined list + group catalog lookup) ──────	COMMENT
MEDIUM	tools/convert_skills_to_llm_chat.py	29	# ── Codex → llm-chat text replacements ──────────────────────────────────	COMMENT
MEDIUM	tools/extract_paper_style.py	139	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tools/extract_paper_style.py	141	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tools/extract_paper_style.py	234	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tools/extract_paper_style.py	236	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tools/extract_paper_style.py	437	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tools/extract_paper_style.py	439	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tools/extract_paper_style.py	449	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tools/extract_paper_style.py	451	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tools/verify_paper_audits.sh	37	# ─── Constants ────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_paper_audits.sh	52	# ─── Args ─────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_paper_audits.sh	90	# ─── Helpers ──────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_paper_audits.sh	135	# ─── Per-audit verification ───────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_paper_audits.sh	419	# ─── Run all checks ───────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_paper_audits.sh	426	# ─── Write report ─────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_paper_audits.sh	454	# ─── Human-readable summary to stderr ─────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_paper_audits.sh	476	# ─── Exit ─────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/overleaf_audit.sh	19	# 1. Working tree (excluding .git/ and node_modules/) ─────────────────────────	COMMENT
MEDIUM	tools/overleaf_audit.sh	39	# 2. Git remote URLs of all sub-repos ─────────────────────────────────────────	COMMENT
MEDIUM	tools/overleaf_audit.sh	58	# 3. Git history (current repo only — full --all scan can be expensive) ───────	COMMENT
MEDIUM	tools/overleaf_audit.sh	76	# 4. Common credential-storage files ──────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	102	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	104	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	126	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	128	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	148	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	150	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	189	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	191	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	223	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	225	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	247	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	249	# ──────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tools/verify_papers.py	290	# ──────────────────────────────────────────────────────────────────────────	COMMENT
229 more matches not shown…

Hyper-Verbose Identifiers478 hits · 520 pts

Severity	File	Line	Snippet	Context
LOW	tools/deepxiv_fetch.py	39	def _raise_for_failed_process(proc: subprocess.CompletedProcess[str]) -> None:	CODE
LOW	tools/verify_papers.py	262	def _verify_arxiv_batch_with_retry(batch: list[str]) -> dict[str, str]:	CODE
LOW	tools/research_wiki.py	563	def fetch_arxiv_metadata_batch(arxiv_ids: list[str], timeout: float = 30.0) -> dict:	CODE
LOW	tools/research_wiki.py	616	def _find_existing_page_by_arxiv(wiki_root: Path, arxiv_id: str) -> Path \| None:	CODE
LOW	tests/test_watchdog_loop.py	32	def test_register_loop_requires_fields(self):	CODE
LOW	tests/test_watchdog_loop.py	38	def test_register_loop_normalizes_and_stamps(self):	CODE
LOW	tests/test_watchdog_loop.py	50	def test_training_still_requires_session_backcompat(self):	CODE
LOW⚡	tests/test_watchdog_loop.py	90	def test_absent_within_grace_pending(self):	CODE
LOW⚡	tests/test_watchdog_loop.py	97	def test_absent_past_grace_missing(self):	CODE
LOW⚡	tests/test_watchdog_loop.py	104	def test_missing_epoch_failsafe_missing_not_pending(self):	CODE
LOW⚡	tests/test_watchdog_loop.py	111	def test_completed_status_suppresses_stale(self):	CODE
LOW⚡	tests/test_watchdog_loop.py	119	def test_runstate_all_phases_accepted_completed(self):	CODE
LOW⚡	tests/test_watchdog_loop.py	128	def test_unparseable_json_fresh_is_ok_not_stale(self):	CODE
LOW⚡	tests/test_watchdog_loop.py	134	def test_detect_only_no_subprocess(self):	CODE
LOW	tests/test_codex_install_update.py	41	def test_install_aris_codex_dry_run_has_no_project_writes(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	68	def test_install_aris_codex_reconcile_and_uninstall(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	154	def test_install_aris_codex_uninstall_uses_manifest_repo_root(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	194	def test_install_aris_codex_reconcile_removes_stale_links_from_manifest_repo(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	246	def test_install_aris_codex_reconcile_accepts_already_deleted_stale_link(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	286	def test_smart_update_codex_copy_install_and_symlink_refusal(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	351	def test_smart_update_codex_local_uses_default_upstream(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	362	def test_smart_update_codex_allows_unrelated_symlinked_skills(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	375	def test_smart_update_codex_refuses_aris_symlinked_skills(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	388	def test_smart_update_codex_ignores_local_only_shared_reference_failures(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	415	def test_smart_update_codex_local_respects_overlay(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	446	def test_smart_update_codex_overlay_updates_existing_base_copy(tmp_path: Path) -> None:	CODE
LOW	tests/test_codex_install_update.py	489	def test_smart_update_codex_overlay_preserves_custom_local_copy(tmp_path: Path) -> None:	CODE
LOW⚡	tests/test_research_wiki_claims.py	33	def test_creates_page_with_proof_status_and_provenance(self):	CODE
LOW⚡	tests/test_research_wiki_claims.py	43	def test_slug_honored_verbatim(self):	CODE
LOW⚡	tests/test_research_wiki_claims.py	47	def test_empirical_status_rejected(self):	CODE
LOW⚡	tests/test_research_wiki_claims.py	57	def test_all_proof_statuses_accepted(self):	CODE
LOW⚡	tests/test_research_wiki_claims.py	62	def test_dedup_skips_without_update_flag(self):	CODE
LOW⚡	tests/test_research_wiki_claims.py	67	def test_update_on_exist_refreshes_status(self):	CODE
LOW	tests/test_research_wiki_claims.py	80	def test_uninitialized_wiki_raises(self):	CODE
LOW	tests/test_reviewer_pins.py	79	def test_all_fresh_reviewer_blocks_pin_model_and_floor_effort():	CODE
LOW	tests/test_provenance.py	16	def test_model_family_mapping():	CODE
LOW	tests/test_provenance.py	36	def test_collision_fails_closed():	CODE
LOW	tests/test_provenance.py	49	def test_assert_cross_family_accepts_different():	CODE
LOW	tests/test_provenance.py	56	def test_assert_cross_family_rejects_same():	CODE
LOW	tests/test_provenance.py	71	def test_assert_cross_family_deterministic_always_ok():	CODE
LOW	tests/test_provenance.py	78	def test_assert_cross_family_fails_closed_on_unknown():	CODE
LOW	tests/test_provenance.py	92	def test_stamp_refuses_same_family():	CODE
LOW	tests/test_provenance.py	106	def test_stamp_refuses_empty_verdict():	CODE
LOW	tests/test_provenance.py	117	def test_stamp_and_read_roundtrip():	CODE
LOW	tests/test_provenance.py	137	def test_stamp_provisional_records_same_family_without_auto_curation_authority():	CODE
LOW	tests/test_provenance.py	158	def test_stamp_provisional_refuses_cross_family_and_unknown_models():	CODE
LOW	tests/test_provenance.py	174	def test_stamp_dir_hashes_skill_md():	CODE
LOW	tests/test_provenance.py	212	def test_spoofed_sidecar_status_cannot_authorize_curation():	CODE
LOW	tests/test_provenance.py	235	def test_stale_stamp_after_edit_is_not_curatable():	CODE
LOW	tests/test_provenance.py	245	def test_provisional_cannot_overwrite_accepted():	CODE
LOW	tests/test_provenance.py	258	def test_legitimate_deterministic_stamp_still_curatable():	CODE
LOW	tests/test_research_wiki_fetch_arxiv_metadata.py	100	def test_retries_on_rate_exceeded_body_then_succeeds(monkeypatch):	CODE
LOW	tests/test_research_wiki_fetch_arxiv_metadata.py	121	def test_raises_after_three_rate_exceeded_bodies(monkeypatch):	CODE
LOW	tests/test_research_wiki_fetch_arxiv_metadata.py	145	def test_malformed_xml_raises(monkeypatch):	CODE
LOW	tests/test_research_wiki_fetch_arxiv_metadata.py	193	def test_sends_descriptive_user_agent(monkeypatch):	CODE
LOW⚡	tests/test_research_wiki_fetch_arxiv_metadata.py	206	def test_user_agent_includes_contact_when_env_set(monkeypatch):	CODE
LOW⚡	tests/test_research_wiki_fetch_arxiv_metadata.py	219	def test_batch_fetch_one_request_many_entries(monkeypatch):	CODE
LOW	tests/test_research_wiki_fetch_arxiv_metadata.py	237	def test_batch_fetch_empty_input_no_request(monkeypatch):	CODE
LOW⚡	tests/test_research_wiki_experiments.py	33	def test_creates_page_with_verdict_and_confidence(self):	CODE
LOW⚡	tests/test_research_wiki_experiments.py	42	def test_invalid_verdict_rejected(self):	CODE
418 more matches not shown…

Cross-Language Confusion58 hits · 372 pts

Severity	File	Line	Snippet	Context
HIGH⚡	tools/verify_papers.py	41	{"id": "p1", "arxiv_id": "2307.03172", "doi": null, "title": "Lost in the Middle"},	STRING
HIGH⚡	tools/verify_papers.py	42	{"id": "p2", "arxiv_id": null, "doi": "10.1016/...", "title": "AgentAI"},	STRING
HIGH⚡	tools/verify_papers.py	43	{"id": "p3", "arxiv_id": null, "doi": null, "title": "Some Paper"}	STRING
HIGH	tools/verify_papers.py	56	{"id": "p3", "status": "unverified", "method": null, "reason": "no_arxiv_no_doi_no_s2_match"},	STRING
HIGH	tools/verify_papers.py	57	{"id": "p4", "status": "verify_pending", "method": null, "reason": "transient_api_failure"}	STRING
HIGH⚡	tests/test_research_wiki_helper_resolution.py	42	cd "$(git rev-parse --show-toplevel 2>/dev/null \|\| pwd)" \|\| exit 1	CODE
HIGH⚡	tests/test_research_wiki_helper_resolution.py	43	ARIS_REPO="${ARIS_REPO:-$(awk -F'\t' '$1=="repo_root"{print $2; exit}' .aris/installed-skills.txt 2>/dev/null)}"	CODE
HIGH⚡	tests/test_research_wiki_helper_resolution.py	45	ARIS_REPO=$(cat "$HOME/.aris/repo" 2>/dev/null) \|\| true	CODE
HIGH⚡	tests/test_research_wiki_helper_resolution.py	52	python3 "$WIKI_SCRIPT" init research-wiki \|\| exit 1	CODE
HIGH⚡	tests/test_research_wiki_helper_resolution.py	53	test -f research-wiki/query_pack.md \|\| exit 1	CODE
HIGH⚡	tests/test_research_wiki_helper_resolution.py	54	test -f research-wiki/log.md \|\| exit 1	CODE
HIGH⚡	tests/test_research_wiki_helper_resolution.py	55	test -f research-wiki/graph/edges.jsonl \|\| exit 1	CODE
HIGH	tests/test_install_aris_replace_link.py	7	`2>/dev/null \|\| true`), and the pattern matched the name against field 2 (kind)	STRING
HIGH⚡	tests/test_iteration_log.py	78	# omitted direction → field absent (not null)	COMMENT
HIGH	tests/test_codex_image2_server.py	82	< "processId": null,	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	873	while (n && n.nodeType === 1) {	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	876	if (n.hasAttribute && n.hasAttribute('data-color-exempt')) return true;	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	877	if (n.getAttribute && n.getAttribute('data-source') === 'paper')	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	879	const comp = n.getAttribute && n.getAttribute('data-component');	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	881	if (n.classList && n.classList.contains('qr-block')) return true;	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	920	colors.push({prop: 'color', rgba: cs.color});	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	921	colors.push({prop: 'background-color', rgba: cs.backgroundColor});	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	922	colors.push({prop: 'border-top-color', rgba: cs.borderTopColor});	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	923	colors.push({prop: 'border-right-color', rgba: cs.borderRightColor});	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	924	colors.push({prop: 'border-bottom-color', rgba: cs.borderBottomColor});	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	925	colors.push({prop: 'border-left-color', rgba: cs.borderLeftColor});	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	926	colors.push({prop: 'fill', rgba: cs.fill});	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	927	colors.push({prop: 'stroke', rgba: cs.stroke});	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	932	if (!m \|\| m.a < 0.5) return null; // transparent-ish: not a dark slab	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	932	if (!m \|\| m.a < 0.5) return null; // transparent-ish: not a dark slab	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	938	if (!mm) return null;	CODE
HIGH⚡	skills/paper-poster-html/scripts/style_check.py	940	if (p.length < 3) return null;	CODE
HIGH	skills/paper-poster-html/scripts/style_check.py	900	const onscreen = r.width > 0 && r.height > 0;	CODE
HIGH	skills/paper-poster-html/scripts/style_check.py	908	if (L !== null && L < 0.18) {	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/render.py	97	"\|\| (window.MathJax && Object.keys(window.MathJax).length > 0))"	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/render.py	105	"() => !!(window.MathJax && window.MathJax.startup "	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/render.py	121	f" ? MathJax.typesetPromise() : null))"	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/render.py	136	"() => document.fonts && document.fonts.ready "	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/render.py	159	" const txt = document.body && document.body.innerText \|\| '';"	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/render.py	164	" return {has_mjx, has_tex: has_dollar \|\| has_ddollar "	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/render.py	165	" \|\| has_paren \|\| has_brack};"	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/polish.py	62	figures.push({	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/polish.py	71	natural_w: img.naturalWidth \|\| 0,	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/polish.py	72	natural_h: img.naturalHeight \|\| 0,	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/polish.py	87	figures.push({	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/polish.py	96	natural_w: img.naturalWidth \|\| 0,	CODE
HIGH⚡	skills/paper-poster-html/scripts/_posterly/polish.py	97	natural_h: img.naturalHeight \|\| 0,	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	111	if (!txt \|\| txt.length > 80) return;	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	113	orphans.push({	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	133	const gapPx = parseFloat(cs.rowGap \|\| cs.gap \|\| '0') \|\| 0;	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	144	cols.push({	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	164	if (jc.indexOf('space') !== -1 \|\| jc === 'center'	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	178	while (el && el !== card) {	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	202	if (r && r.height > 0 && r.bottom > maxB) maxB = r.bottom;	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	224	cards.push({	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	244	if (!parent \|\| seenFlexBr.has(parent)) return;	CODE
HIGH	skills/paper-poster-html/scripts/_posterly/polish.py	248	flexbr.push({	CODE
HIGH	skills/experiment-queue/scripts/queue_manager.py	34	"completed": null,	STRING

Modern AI Meta-Vocabulary61 hits · 159 pts

Severity	File	Line	Snippet	Context
MEDIUM	README.md	331	- 2026-05-02 — ![NEW](https://img.shields.io/badge/NEW-red?style=flat-square) 🛠️🔗 **Tools-infrastructure migration s	CODE
MEDIUM	tools/arxiv_fetch.py	245	# Defensive aliases — models frequently hallucinate `get` / `fetch`	COMMENT
MEDIUM	tools/meta_opt/check_ready.sh	58	# Model-delta trigger (harness diet): a model bump makes existing scaffolding a	COMMENT
MEDIUM	docs/tutorials/agentic_rl_tutorial.html	328	<li><a href="#1-直觉从-rlhf-到-agentic-rl">§1 直觉：从 RLHF 到 Agentic RL</a>	CODE
MEDIUM	docs/tutorials/agentic_rl_tutorial.html	332	<li><a href="#13-agentic-rl-与三类-rl-邻居的关系">1.3　Agentic RL 与三类 RL 邻居的关系</a></li>	CODE
MEDIUM	docs/tutorials/agentic_rl_tutorial.html	370	<li><a href="#6-specific-algorithms代表性-agentic-rl-papers">§6 Specific algorithms（代表性 Agentic RL papers）</a>	CODE
MEDIUM	docs/tutorials/agentic_rl_tutorial.html	412	<li><a href="#91-agentic-rl-的七宗罪">9.1　Agentic RL 的"七宗罪"</a></li>	CODE
MEDIUM	docs/tutorials/kl_divergence_rlhf_tutorial_en.html	744	<pre><code class="language-python"># Per-token KL with action mask (chat / agentic RL setting)	CODE
MEDIUM	docs/tutorials/self_evolving_agents_tutorial.html	417	<li><a href="#127-hallucination-compounding独立-reviewer-也可能共幻觉">12.7　Hallucination Compounding（独立 reviewer 也可能共幻觉）</a></l	CODE
MEDIUM	docs/tutorials/self_evolving_agents_tutorial_en.md	900	### 12.7　Hallucination Compounding (independent reviewers can co-hallucinate)	COMMENT
MEDIUM⚡	…cs/tutorials/multi_agent_long_horizon_tutorial_en.html	331	<li><a href="#12-multi-agent-vs-long-horizon-vs-agentic">1.2 multi-agent vs long-horizon vs agentic</a></li>	CODE
MEDIUM⚡	…cs/tutorials/multi_agent_long_horizon_tutorial_en.html	335	<li><a href="#2-core-multi-agent-collaboration-paradigms">§2 Core multi-agent collaboration paradigms</a>	CODE
MEDIUM⚡	…cs/tutorials/multi_agent_long_horizon_tutorial_en.html	338	<li><a href="#22-autogen-groupchat--a-general-multi-agent-framework">2.2 AutoGen: GroupChat / a general multi-agent fram	CODE
MEDIUM⚡	…cs/tutorials/multi_agent_long_horizon_tutorial_en.html	344	<li><a href="#3-multi-agent-debate-from-society-of-mind-to-modern-implementations">§3 Multi-agent debate: from Society o	CODE
MEDIUM⚡	…cs/tutorials/multi_agent_long_horizon_tutorial_en.html	405	<li><a href="#10-engineering-practice-subagent-orchestration--budget-tracking">§10 Engineering practice: subagent orches	CODE
MEDIUM⚡	…cs/tutorials/multi_agent_long_horizon_tutorial_en.html	409	<li><a href="#111-cost-model-for-multi-agent-collaboration">11.1 Cost model for multi-agent collaboration</a></li>	CODE
MEDIUM⚡	…cs/tutorials/multi_agent_long_horizon_tutorial_en.html	416	<li><a href="#121-multi-agent-vs-single-agent--reflection">12.1 Multi-agent vs single-agent + reflection</a></li>	CODE
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial.md	50	### 1.2　multi-agent vs long-horizon vs agentic	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial.md	73	## §2 multi-agent 协作核心范式	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial.md	95	### 2.2　AutoGen：GroupChat / 通用 multi-agent 框架	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial.md	198	## §3 multi-agent debate：从 Society of Mind 到现代实现	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial.md	945	## §10 工程实践：subagent orchestration + budget tracking	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial.md	1008	### 11.1　multi-agent 协作 cost 模型	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial.md	1060	### 12.1　multi-agent vs single-agent + reflection	COMMENT
MEDIUM	docs/tutorials/kl_divergence_rlhf_tutorial_en.md	676	# Per-token KL with action mask (chat / agentic RL setting)	COMMENT
MEDIUM⚡	docs/tutorials/multi_agent_long_horizon_tutorial.html	331	<li><a href="#12-multi-agent-vs-long-horizon-vs-agentic">1.2　multi-agent vs long-horizon vs agentic</a></li>	CODE
MEDIUM⚡	docs/tutorials/multi_agent_long_horizon_tutorial.html	335	<li><a href="#2-multi-agent-协作核心范式">§2 multi-agent 协作核心范式</a>	CODE
MEDIUM⚡	docs/tutorials/multi_agent_long_horizon_tutorial.html	338	<li><a href="#22-autogengroupchat--通用-multi-agent-框架">2.2　AutoGen：GroupChat / 通用 multi-agent 框架</a></li>	CODE
MEDIUM⚡	docs/tutorials/multi_agent_long_horizon_tutorial.html	344	<li><a href="#3-multi-agent-debate从-society-of-mind-到现代实现">§3 multi-agent debate：从 Society of Mind 到现代实现</a>	CODE
MEDIUM⚡	docs/tutorials/multi_agent_long_horizon_tutorial.html	405	<li><a href="#10-工程实践subagent-orchestration--budget-tracking">§10 工程实践：subagent orchestration + budget tracking</a>	CODE
MEDIUM⚡	docs/tutorials/multi_agent_long_horizon_tutorial.html	409	<li><a href="#111-multi-agent-协作-cost-模型">11.1　multi-agent 协作 cost 模型</a></li>	CODE
MEDIUM⚡	docs/tutorials/multi_agent_long_horizon_tutorial.html	416	<li><a href="#121-multi-agent-vs-single-agent--reflection">12.1　multi-agent vs single-agent + reflection</a></li>	CODE
MEDIUM	docs/tutorials/agent_foundations_tutorial.html	375	<li><a href="#71-subagent-orchestration">7.1　Subagent orchestration</a></li>	CODE
MEDIUM	docs/tutorials/agentic_rl_tutorial_en.html	328	<li><a href="#1-intuition-from-rlhf-to-agentic-rl">§1 Intuition: from RLHF to Agentic RL</a>	CODE
MEDIUM	docs/tutorials/agentic_rl_tutorial_en.html	332	<li><a href="#13-agentic-rl-relative-to-three-rl-neighbors">1.3　Agentic RL relative to three RL neighbors</a></li>	CODE
MEDIUM	docs/tutorials/agentic_rl_tutorial_en.html	370	<li><a href="#6-specific-algorithms-representative-agentic-rl-papers">§6 Specific algorithms (representative Agentic RL	CODE
MEDIUM	docs/tutorials/agentic_rl_tutorial_en.html	412	<li><a href="#91-the-seven-deadly-sins-of-agentic-rl">9.1　The "seven deadly sins" of Agentic RL</a></li>	CODE
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial_en.md	50	### 1.2 multi-agent vs long-horizon vs agentic	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial_en.md	73	## §2 Core multi-agent collaboration paradigms	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial_en.md	97	### 2.2 AutoGen: GroupChat / a general multi-agent framework	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial_en.md	949	## §10 Engineering practice: subagent orchestration + budget tracking	COMMENT
MEDIUM	docs/tutorials/multi_agent_long_horizon_tutorial_en.md	1012	### 11.1 Cost model for multi-agent collaboration	COMMENT
MEDIUM	docs/tutorials/agent_foundations_tutorial.md	609	### 7.1　Subagent orchestration	COMMENT
MEDIUM	docs/tutorials/kl_divergence_rlhf_tutorial.md	676	# Per-token KL with action mask (chat / agentic RL setting)	COMMENT
MEDIUM	docs/tutorials/agent_foundations_tutorial_en.html	375	<li><a href="#71-subagent-orchestration">7.1　Subagent orchestration</a></li>	CODE
MEDIUM	docs/tutorials/reasoning_models_tutorial_en.html	336	<li><a href="#21-chain-of-thought-wei-et-al-neurips-2022-arxiv-220111903">2.1　Chain-of-Thought (Wei et al., NeurIPS 2022	CODE
MEDIUM	docs/tutorials/reasoning_models_tutorial_en.html	758	state: str # partial reasoning trace	CODE
MEDIUM	docs/tutorials/agent_foundations_tutorial_en.md	609	### 7.1　Subagent orchestration	COMMENT
MEDIUM	docs/tutorials/reasoning_models_tutorial.html	336	<li><a href="#21-chain-of-thought-wei-et-al-neurips-2022-arxiv-220111903">2.1　Chain-of-Thought (Wei et al., NeurIPS 2022	CODE
MEDIUM	docs/tutorials/kl_divergence_rlhf_tutorial.html	744	<pre><code class="language-python"># Per-token KL with action mask (chat / agentic RL setting)	CODE
MEDIUM	docs/tutorials/reasoning_models_tutorial_en.md	570	state: str # partial reasoning trace	CODE
MEDIUM	docs/tutorials/self_evolving_agents_tutorial_en.html	402	<li><a href="#11-inference-time-orchestration-like-aris-vs-training-time-meta-learning-like-native-evolution">§11 Infere	CODE
MEDIUM	docs/tutorials/self_evolving_agents_tutorial_en.html	417	<li><a href="#127-hallucination-compounding-independent-reviewers-can-co-hallucinate">12.7　Hallucination Compounding (in	CODE
MEDIUM	skills/paper-poster-html/scripts/run_gates.py	59	# Canonical gate order. The orchestration depends on this list order, so	COMMENT
MEDIUM	skills/meta-optimize/SKILL.md	402	Inspired by [Meta-Harness](https://arxiv.org/abs/2603.28052) (Lee et al., 2026) — end-to-end optimization of model harne	CODE
MEDIUM	skills/skills-codex/meta-optimize/SKILL.md	313	Inspired by [Meta-Harness](https://arxiv.org/abs/2603.28052) (Lee et al., 2026) — end-to-end optimization of model harne	CODE
MEDIUM	skills/skills-codex/render-html/SKILL.md	39	- Defense-in-depth XSS sanitization. The helper strips `<script>`/`<style>`/`<iframe>`/`<object>`/`<embed>`/`<form>`	CODE
MEDIUM	skills/skills-codex/render-html/scripts/render_html.py	85	# Even if the workflow LLM hallucinates these, they never reach output.	COMMENT
MEDIUM	skills/render-html/SKILL.md	39	- Defense-in-depth XSS sanitization. The helper strips `<script>`/`<style>`/`<iframe>`/`<object>`/`<embed>`/`<form>`	CODE
MEDIUM	skills/render-html/scripts/render_html.py	90	# Even if the workflow LLM hallucinates these, they never reach output.	COMMENT
1 more matches not shown…

Excessive Try-Catch Wrapping117 hits · 140 pts

Severity	File	Line	Snippet	Context
LOW	tools/forensics_gate.py	227	except Exception as e:	CODE
LOW⚡	tools/watchdog.py	164	except Exception:	CODE
LOW⚡	tools/watchdog.py	178	except Exception:	CODE
LOW	tools/watchdog.py	213	except Exception:	CODE
LOW	tools/watchdog.py	380	except Exception:	CODE
LOW	tools/watchdog.py	427	except Exception as e:	CODE
LOW	tools/semantic_scholar_fetch.py	99	except Exception:	CODE
LOW	tools/semantic_scholar_fetch.py	432	except Exception as exc:	CODE
MEDIUM	tools/semantic_scholar_fetch.py	433	print(f"Error: {exc}", file=sys.stderr)	CODE
LOW	tools/skill_picker.py	219	except Exception as exc: # curses import/terminal failures → fallback	CODE
LOW	tools/openalex_fetch.py	114	except Exception as e:	CODE
MEDIUM	tools/openalex_fetch.py	115	print(f"Error fetching from OpenAlex: {e}", file=sys.stderr)	CODE
LOW	tools/openalex_fetch.py	320	except Exception as e:	STRING
MEDIUM	tools/openalex_fetch.py	321	print(f"Error: {e}", file=sys.stderr)	STRING
MEDIUM	tools/convert_skills_to_llm_chat.py	241	print("Error: refusing to convert the repo's canonical skills/ tree in place.")	CODE
MEDIUM	tools/convert_skills_to_llm_chat.py	246	print(f"Error: source directory not found: {source_dir}")	CODE
LOW	tools/extract_paper_style.py	170	except Exception:	CODE
LOW	tools/extract_paper_style.py	201	except Exception as e:	CODE
LOW	tools/extract_paper_style.py	215	except Exception as e:	CODE
LOW	tools/extract_paper_style.py	533	except Exception as e:	CODE
LOW	tools/exa_search.py	419	except Exception as exc:	CODE
MEDIUM	tools/exa_search.py	420	print(f"Error: {exc}", file=sys.stderr)	CODE
LOW	tools/verify_paper_audits.sh	211	except Exception:	CODE
LOW	tools/verify_paper_audits.sh	306	except Exception as e:	CODE
LOW⚡	tools/verify_paper_audits.sh	318	except Exception as e:	CODE
LOW⚡	tools/verify_paper_audits.sh	326	except Exception as e:	CODE
LOW⚡	tools/verify_paper_audits.sh	333	except Exception as e: # any analysis crash is a BLOCKING schema failure, never fail-open	CODE
LOW	tools/verify_papers.py	565	except Exception as e:	CODE
LOW⚡	aris-monitor/scanner.py	135	except Exception:	CODE
LOW⚡	aris-monitor/scanner.py	138	except Exception:	CODE
LOW	aris-monitor/scanner.py	156	except Exception:	CODE
LOW	aris-monitor/scanner.py	180	except Exception:	CODE
LOW	aris-monitor/scanner.py	203	except Exception:	CODE
LOW	aris-monitor/scanner.py	225	except Exception:	CODE
LOW	aris-monitor/scanner.py	241	except Exception:	CODE
LOW	aris-monitor/scanner.py	378	except Exception:	CODE
LOW	aris-monitor/scanner.py	384	except Exception:	CODE
LOW	aris-monitor/widget.py	145	except Exception:	CODE
LOW	aris-monitor/widget.py	150	except Exception:	CODE
LOW	aris-monitor/widget.py	189	except Exception:	CODE
LOW	aris-monitor/widget.py	226	except Exception:	CODE
LOW	aris-monitor/widget.py	243	except Exception:	CODE
LOW	aris-monitor/widget.py	308	except Exception as e: # never let a focus attempt crash the panel	CODE
LOW	aris-monitor/widget.py	363	except Exception as ex:	CODE
MEDIUM	aris-monitor/widget.py	305	def work():	CODE
LOW	aris-monitor/ticker.py	73	except Exception:	CODE
LOW	aris-monitor/focus.py	51	except Exception:	CODE
LOW	aris-monitor/focus.py	73	except Exception:	CODE
LOW	aris-monitor/focus.py	87	except Exception as e: # noqa: BLE001 -- best-effort, never raise to the UI	CODE
LOW	tests/test_provenance.py	281	except Exception as e: # noqa: BLE001	CODE
LOW	tests/test_verify_paper_audits.py	194	except Exception as exc: # noqa: BLE001	CODE
LOW	tests/test_corpus_write_guard.py	73	except Exception as e: # noqa: BLE001	CODE
LOW	tests/test_manual_review_integration.py	131	except Exception as e:	CODE
LOW	tests/test_capture_filter.py	83	except Exception as e: # noqa: BLE001	CODE
LOW	tests/test_threat_scan.py	136	except Exception as e: # noqa: BLE001	CODE
LOW	tests/_llm_chat_helpers.py	69	except Exception as e:	CODE
LOW	tests/test_run_state.py	284	except Exception as e: # noqa: BLE001	CODE
LOW	tests/_minimax_helpers.py	70	except Exception as e:	CODE
LOW	tests/test_evidence_check.py	186	except Exception as e: # noqa: BLE001	CODE
LOW	docs/tutorials/self_evolving_agents_tutorial.html	1307	except Exception:	CODE
57 more matches not shown…

Unused Imports75 hits · 72 pts

Severity	File	Line	Context
LOW	tools/evidence_check.py	32	CODE
LOW	tools/evidence_check.py	37	CODE
LOW	tools/iteration_log.py	27	CODE
LOW	tools/run_state.py	39	CODE
LOW	tools/paper_illustration_image2.py	30	CODE
LOW	tools/check_skills_inventory.py	4	CODE
LOW	tools/semantic_scholar_fetch.py	45	CODE
LOW	tools/convert_skills_to_llm_chat.py	20	CODE
LOW	tools/convert_skills_to_llm_chat.py	24	CODE
LOW	tools/extract_paper_style.py	110	CODE
LOW	tools/extract_paper_style.py	115	CODE
LOW	tools/exa_search.py	59	CODE
LOW	tools/deepxiv_fetch.py	4	CODE
LOW	tools/capture_filter.py	29	CODE
LOW	tools/verify_papers.py	84	CODE
LOW	tools/figure_renderer.py	36	CODE
LOW	tools/research_wiki.py	45	CODE
LOW	tools/provenance.py	20	CODE
LOW	tools/generate_codex_claude_review_overrides.py	4	CODE
LOW	tools/threat_scan.py	36	CODE
LOW	tools/arxiv_fetch.py	18	CODE
LOW	tools/experiment_queue/build_manifest.py	17	CODE
LOW	tools/experiment_queue/queue_manager.py	17	CODE
LOW	aris-monitor/scanner.py	49	CODE
LOW	aris-monitor/widget.py	35	CODE
LOW	aris-monitor/ticker.py	18	CODE
LOW	aris-monitor/focus.py	26	CODE
LOW	tests/test_watchdog_loop.py	8	CODE
LOW	tests/test_codex_install_update.py	1	CODE
LOW	tests/test_research_wiki_claims.py	9	CODE
LOW	tests/test_research_wiki_experiments.py	9	CODE
LOW	tests/test_minimax_chat_server.py	6	CODE
LOW	tests/test_research_wiki_ideas.py	9	CODE
LOW	tests/test_install_aris_ps1.py	1	CODE
LOW	tests/test_iteration_log.py	2	CODE
LOW	tests/test_verify_paper_audits.py	3	CODE
LOW	tests/test_codex_image2_server.py	3	CODE
LOW	tests/test_codex_skill_mirror.py	1	CODE
LOW	tests/test_manual_review_integration.py	16	CODE
LOW	tests/test_llm_chat_server.py	13	CODE
LOW	tests/test_claude_review_parse.py	13	CODE
LOW	tests/test_watchdog.py	14	CODE
LOW	tests/test_feishu_bridge_server.py	16	CODE
LOW	tests/test_copilot_install.py	2	CODE
LOW	tests/test_trigger_eval.py	11	CODE
LOW	tests/test_trigger_eval.py	12	CODE
LOW	tests/_feishu_bridge_helpers.py	9	CODE
LOW	tests/test_mainline_large_payload_prompts.py	1	CODE
LOW	templates/claude-hooks/corpus_write_guard.py	32	CODE
LOW	skills/paper-poster-html/scripts/extract_pdf_figures.py	34	CODE
LOW	skills/paper-poster-html/scripts/preprocess_figures.py	24	CODE
LOW	skills/paper-poster-html/scripts/render_preview.py	18	CODE
LOW	skills/paper-poster-html/scripts/asset_check.py	45	CODE
LOW	skills/paper-poster-html/scripts/run_gates.py	36	CODE
LOW	skills/paper-poster-html/scripts/poster_check.py	24	CODE
LOW	skills/paper-poster-html/scripts/style_check.py	38	CODE
LOW	skills/paper-poster-html/scripts/_posterly/measure.py	17	CODE
LOW	skills/paper-poster-html/scripts/_posterly/render.py	20	CODE
LOW	skills/paper-poster-html/scripts/_posterly/render.py	24	CODE
LOW	…ls/paper-poster-html/scripts/_posterly/verify_final.py	20	CODE
15 more matches not shown…

Deep Nesting77 hits · 66 pts

Severity	File	Line	Context
LOW	tools/run_state.py	324	CODE
LOW	tools/watchdog.py	357	CODE
LOW	tools/watchdog.py	391	CODE
LOW	tools/skill_picker.py	33	CODE
LOW	tools/skill_picker.py	139	CODE
LOW	tools/skill_picker.py	142	CODE
LOW	tools/openalex_fetch.py	212	CODE
LOW	tools/extract_paper_style.py	462	CODE
LOW	tools/exa_search.py	109	CODE
LOW	tools/verify_papers.py	262	CODE
LOW	tools/verify_papers.py	315	CODE
LOW	tools/verify_papers.py	358	CODE
LOW	tools/research_wiki.py	108	CODE
LOW	tools/research_wiki.py	137	CODE
LOW	tools/research_wiki.py	206	CODE
LOW	tools/research_wiki.py	706	CODE
LOW	tools/research_wiki.py	889	CODE
LOW	tools/research_wiki.py	1107	CODE
LOW	tools/research_wiki.py	1278	CODE
LOW	tools/research_wiki.py	1455	CODE
LOW	tools/research_wiki.py	234	CODE
LOW	tools/provenance.py	253	CODE
LOW	tools/threat_scan.py	116	CODE
LOW	tools/meta_opt/trigger_eval.py	116	CODE
LOW	tools/meta_opt/trigger_eval.py	216	CODE
LOW	tests/test_reviewer_pins.py	54	CODE
LOW	tests/test_argument_hint_lint.py	55	CODE
LOW	tests/test_codex_skill_mirror.py	49	CODE
LOW	tests/test_manual_review_integration.py	136	CODE
LOW	tests/test_claude_review_overlay.py	32	CODE
LOW	tests/_llm_chat_helpers.py	27	CODE
LOW	tests/_llm_chat_helpers.py	76	CODE
LOW	tests/test_manual_review.py	279	CODE
LOW	tests/test_manual_review.py	350	CODE
LOW	tests/test_manual_review.py	502	CODE
LOW	tests/test_manual_review.py	566	CODE
LOW	tests/test_manual_review.py	645	CODE
LOW	tests/test_manual_review.py	702	CODE
LOW	tests/_minimax_helpers.py	74	CODE
LOW	skills/paper-poster-html/scripts/extract_pdf_figures.py	339	CODE
LOW	skills/paper-poster-html/scripts/preprocess_figures.py	153	CODE
LOW	skills/paper-poster-html/scripts/style_check.py	274	CODE
LOW	skills/paper-poster-html/scripts/style_check.py	337	CODE
LOW	skills/paper-poster-html/scripts/style_check.py	427	CODE
LOW	skills/paper-poster-html/scripts/style_check.py	1136	CODE
LOW	skills/paper-poster-html/scripts/style_check.py	351	CODE
LOW	skills/paper-poster-html/scripts/_posterly/measure.py	140	CODE
LOW	skills/paper-poster-html/scripts/_posterly/polish.py	261	CODE
LOW	skills/paper-poster-html/scripts/_posterly/canvas.py	112	CODE
LOW	skills/figure-spec/scripts/figure_renderer.py	115	CODE
LOW	skills/figure-spec/scripts/figure_renderer.py	162	CODE
LOW	skills/figure-spec/scripts/figure_renderer.py	340	CODE
LOW	skills/skills-codex/render-html/scripts/render_html.py	252	CODE
LOW	skills/skills-codex/render-html/scripts/render_html.py	489	CODE
LOW	skills/skills-codex/render-html/scripts/render_html.py	555	CODE
LOW	skills/skills-codex/render-html/scripts/render_html.py	638	CODE
LOW	skills/experiment-queue/scripts/build_manifest.py	74	CODE
LOW	skills/experiment-queue/scripts/queue_manager.py	187	CODE
LOW	skills/experiment-queue/scripts/queue_manager.py	303	CODE
LOW	skills/render-html/scripts/render_html.py	272	CODE
17 more matches not shown…

Synthetic Comment Markers8 hits · 40 pts

Severity	File	Line	Snippet	Context
HIGH	docs/tutorials/vlm_multimodal_tutorial_en.md	11	4. LLaVA = projector + 2-stage train: Liu et al. 2023 (NeurIPS) use a lightweight MLP projector to project froze	CODE
HIGH	docs/tutorials/vlm_multimodal_tutorial_en.md	446	- Use 158K visual instructions generated by GPT-4 (LLaVA-Instruct)	CODE
HIGH	docs/tutorials/vlm_multimodal_tutorial_en.md	1206	<summary>Q18. Why is much visual instruction-tuning data generated by GPT-4?</summary>	CODE
HIGH	docs/tutorials/reasoning_models_tutorial_en.html	722	<ul><li>Filtered by three criteria: difficulty, diversity, quality</li><li>Each sample: question + reasoning trace (gene	CODE
HIGH	docs/tutorials/vlm_multimodal_tutorial_en.html	462	<ol><li><strong>Vision encoder = ViT-dominated</strong>: Dosovitskiy et al. 2021 (ICLR) slice images into $P\times P$ pa	CODE
HIGH	docs/tutorials/vlm_multimodal_tutorial_en.html	703	<ul><li>Use 158K visual instructions generated by GPT-4 (LLaVA-Instruct)</li><li>Unfreeze projector + LLM; <strong>visio	CODE
HIGH	docs/tutorials/vlm_multimodal_tutorial_en.html	1091	<summary>Q18. Why is much visual instruction-tuning data generated by GPT-4?</summary>	CODE
HIGH	docs/tutorials/reasoning_models_tutorial_en.md	496	- Each sample: question + reasoning trace (generated by Gemini Thinking) + answer	CODE

Over-Commented Block41 hits · 39 pts

Severity	File	Line	Snippet	Context
LOW	tools/evidence_check.py	41		COMMENT
LOW	tools/install_aris_copilot.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/install_aris_copilot.sh	21	#	COMMENT
LOW	tools/install_aris_copilot.sh	41	# --quiet no prompts; abort on any condition that would prompt	COMMENT
LOW	tools/smart_update_copilot.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/smart_update_copilot.sh	21	#	COMMENT
LOW	tools/overleaf_setup.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/smart_update.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/smart_update.sh	21	# must be a relative path	COMMENT
LOW	tools/save_trace.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/save_trace.sh	21	# --thread-id "019d8fe0-..." \	COMMENT
LOW	tools/install_aris_codex.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/install_aris_codex.sh	21	# default install if no manifest, else reconcile	COMMENT
LOW	tools/verify_paper_audits.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/verify_paper_audits.sh	21	#	COMMENT
LOW	tools/verify_wiki_coverage.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/smart_update_codex.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/smart_update_codex.sh	21	# one [y/N]; a decline is remembered in	COMMENT
LOW	tools/install_aris.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/install_aris.sh	21	# --exclude X,Y never install these skills (recorded as declined)	COMMENT
LOW	tools/install_aris.sh	41	# --replace-link NAME replace an upstream-internal symlink that points to	COMMENT
LOW	tools/install_aris.sh	281	# support directories (existing only)	COMMENT
LOW	tools/lint_skills_helpers.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/meta_opt/check_ready.sh	1	#!/usr/bin/env bash	COMMENT
LOW	tools/meta_opt/check_ready.sh	21	# comparison. Use `\|\| true` to absorb the non-zero exit and keep the	COMMENT
LOW	tools/meta_opt/log_event.sh	1	#!/usr/bin/env bash	COMMENT
LOW	aris-monitor/run.sh	1	#!/usr/bin/env bash	COMMENT
LOW	aris-monitor/focus-tty.sh	1	#!/bin/bash	COMMENT
LOW	tests/test_research_wiki_helper_resolution.py	21	from pathlib import Path	COMMENT
LOW	skills/paper-poster-html/scripts/style_check.py	81	#: one of these via `var(--fs-N)` (rule 8); the count gate (rule 9) warns	COMMENT
LOW	skills/paper-poster-html/scripts/_posterly/measure.py	301	# it directly by comparing scroll-size to client-size on the alignment	COMMENT
LOW	skills/paper-poster-html/scripts/_posterly/polish.py	181	el = el.parentElement;	COMMENT
LOW	skills/paper-poster-html/scripts/_posterly/preflight.py	41	}	COMMENT
LOW	skills/paper-poster-html/scripts/_posterly/preflight.py	61	"body": ("poster",),	COMMENT
LOW	skills/paper-poster-html/scripts/_posterly/preflight.py	341	for pat, desc in LATEX_PATTERNS:	COMMENT
LOW	skills/paper-poster-html/scripts/_posterly/preflight.py	421	# role per ROLE_PARENTS. The precipitating bug was a misplaced	COMMENT
LOW	skills/interview-cheatsheet/SKILL.md	21	### Section skeleton (12-14 sections)	COMMENT
LOW	skills/research-wiki/SKILL.md	381		COMMENT
LOW	skills/skills-codex/interview-cheatsheet/SKILL.md	21	### Section skeleton (12-14 sections)	COMMENT
LOW	skills/skills-codex/research-wiki/SKILL.md	341	# index + query_pack, logs. Default skip-on-exist (won't clobber an idea enriched	COMMENT
LOW	skills/shared-references/review-tracing.md	61	--thread-id "<threadId from response>" \	COMMENT

Magic Placeholder Names7 hits · 35 pts

Severity	File	Line	Snippet	Context
HIGH	docs/LLM_API_MIX_MATCH_GUIDE.md	100	"LLM_API_KEY": "your-api-key",	CODE
HIGH	docs/integrations/VAST_GPU_GUIDE_CN.md	30	vastai set api-key YOUR_API_KEY	CODE
HIGH	docs/integrations/VAST_GPU_GUIDE.md	30	vastai set api-key YOUR_API_KEY	CODE
HIGH	skills/vast-gpu/SKILL.md	21	vastai set api-key YOUR_API_KEY	CODE
HIGH	skills/auto-review-loop-llm/SKILL.md	45	"LLM_API_KEY": "your-api-key",	CODE
HIGH	skills/skills-codex/vast-gpu/SKILL.md	21	vastai set api-key YOUR_API_KEY	CODE
HIGH	skills/skills-codex/auto-review-loop-llm/SKILL.md	33	"LLM_API_KEY": "your-api-key",	CODE

Cross-File Repetition4 hits · 20 pts

Severity	File	Snippet	Context
HIGH	mcp-servers/gemini-review/server.py	rebind stdio to raw unbuffered binary streams for mcp framing. deferred into a function (called at the top of main()) so	STRING
HIGH	mcp-servers/minimax-chat/server.py	rebind stdio to raw unbuffered binary streams for mcp framing. deferred into a function (called at the top of main()) so	STRING
HIGH	mcp-servers/codex-image2/server.py	rebind stdio to raw unbuffered binary streams for mcp framing. deferred into a function (called at the top of main()) so	STRING
HIGH	mcp-servers/llm-chat/server.py	rebind stdio to raw unbuffered binary streams for mcp framing. deferred into a function (called at the top of main()) so	STRING

AI Slop Vocabulary9 hits · 18 pts

Severity	File	Line	Snippet	Context
MEDIUM	tools/meta_opt/check_ready.sh	58	# Model-delta trigger (harness diet): a model bump makes existing scaffolding a	COMMENT
MEDIUM⚡	tests/test_research_wiki_helper_resolution.py	211	# Helper-missing case: chain exits 42 (test harness sentinel)	STRING
MEDIUM	…cs/tutorials/multi_agent_long_horizon_tutorial_en.html	371	<li><a href="#61-plan-then-execute-paradigm">6.1 Plan-then-execute paradigm</a></li>	CODE
MEDIUM	docs/tutorials/rlhf_dpo_grpo_ppo_tutorial_en.html	342	<li><a href="#3-rlhf-pipeline-instructgpt-paradigm">§3 RLHF Pipeline (InstructGPT Paradigm)</a>	CODE
MEDIUM	docs/tutorials/3d_generation_tutorial_en.html	382	<li><a href="#71-zero-1-to-3-paradigm-novel-view-via-diffusion">7.1　Zero-1-to-3 paradigm (novel view via diffusion)</a><	CODE
MEDIUM	docs/tutorials/agent_foundations_tutorial_en.html	381	<li><a href="#8-computer-use-paradigm-agent-as-os-user">§8 Computer-Use paradigm: agent as OS-user</a>	CODE
MEDIUM	docs/tutorials/reasoning_models_tutorial_en.html	328	<li><a href="#1-why-this-is-the-biggest-paradigm-shift-of-2024-2026">§1 Why This Is the Biggest Paradigm Shift of 2024-2	CODE
MEDIUM	docs/tutorials/self_evolving_agents_tutorial_en.html	335	<li><a href="#24-three-paradigm-comparison-memorize">2.4　Three-paradigm comparison (memorize)</a></li>	CODE
MEDIUM	mcp-servers/minimax-chat/server.py	2	"""MiniMax Chat MCP Server - A robust MCP server that calls MiniMax Chat Completions API"""	STRING

Example Usage Blocks9 hits · 14 pts

Severity	File	Line	Snippet	Context
LOW	tools/install_aris_copilot.sh	14	# Usage:	COMMENT
LOW⚡	tools/overleaf_setup.sh	9	# Usage:	COMMENT
LOW	tools/smart_update.sh	6	# Usage:	COMMENT
LOW	tools/install_aris_codex.sh	17	# Usage:	COMMENT
LOW	tools/verify_paper_audits.sh	8	# Usage:	COMMENT
LOW	tools/verify_wiki_coverage.sh	14	# Usage:	COMMENT
LOW	tools/install_aris.sh	10	# Usage:	COMMENT
LOW	aris-monitor/run.sh	14	# Usage:	COMMENT
LOW	docs/tutorials/vae_vqvae_vqgan_tutorial_en.html	946	# Usage example:	COMMENT

Redundant / Tautological Comments6 hits · 9 pts

Severity	File	Line	Snippet	Context
LOW	tools/smart_update_copilot.sh	208	# Check if local differs from upstream	COMMENT
LOW	tools/smart_update.sh	355	# Check if the LOCAL version has lines matching personal patterns	COMMENT
LOW	tools/save_trace.sh	85	# Check if this run dir was created in the last 2 hours (same session)	COMMENT
LOW	tools/research_wiki.py	163	# Check if edge already exists	COMMENT
LOW	tools/install_aris.sh	1162	# Check if any can be auto-resolved by --adopt-existing (where current target == expected)	COMMENT
LOW	mcp-servers/minimax-chat/server.py	292	# Check if it's a Content-Length header or direct JSON	COMMENT

Fake / Example Data6 hits · 9 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/test_research_wiki_fetch_arxiv_metadata.py	208	monkeypatch.setenv("ARIS_VERIFY_EMAIL", "dev@example.org")	CODE
LOW⚡	tests/test_research_wiki_fetch_arxiv_metadata.py	214	assert "mailto:dev@example.org" in ua	CODE
LOW⚡	tests/test_exa_search.py	89	author="John Doe",	CODE
LOW⚡	tests/test_exa_search.py	97	assert entry["author"] == "John Doe"	CODE
LOW⚡	tests/test_arxiv_fetch.py	198	monkeypatch.setenv("ARIS_VERIFY_EMAIL", "dev@example.org")	CODE
LOW⚡	tests/test_arxiv_fetch.py	204	assert "mailto:dev@example.org" in ua	CODE

AI Structural Patterns8 hits · 8 pts

Severity	File	Line	Context
LOW	tools/semantic_scholar_fetch.py	172	CODE
LOW	tools/semantic_scholar_fetch.py	215	CODE
LOW	tools/exa_search.py	140	CODE
LOW	tools/research_wiki.py	706	CODE
LOW	tools/research_wiki.py	889	CODE
LOW	tools/research_wiki.py	1107	CODE
LOW	tools/research_wiki.py	1278	CODE
LOW	tests/test_install_aris_tools_symlink.py	48	CODE

Overly Generic Function Names8 hits · 8 pts

Severity	File	Line	Snippet	Context
LOW	tests/_llm_chat_helpers.py	76	def handle_request(request):	CODE
LOW	tests/_minimax_helpers.py	74	def handle_request(request):	CODE
LOW	mcp-servers/gemini-review/server.py	1631	def handle_request(request: dict[str, Any]) -> dict[str, Any] \| None:	CODE
LOW	mcp-servers/minimax-chat/server.py	149	def handle_request(request):	CODE
LOW	mcp-servers/codex-image2/server.py	743	def handle_request(request: dict[str, Any]) -> dict[str, Any] \| None:	CODE
LOW	mcp-servers/manual-review/server.py	616	def handle_request(request: dict[str, Any]) -> dict[str, Any] \| None:	STRING
LOW	mcp-servers/claude-review/server.py	506	def handle_request(request: dict[str, Any]) -> dict[str, Any] \| None:	CODE
LOW	mcp-servers/llm-chat/server.py	151	def handle_request(request):	CODE

Verbosity Indicators3 hits · 7 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/test_minimax_integration.py	33	# Step 1: Initialize	COMMENT
LOW⚡	tests/test_minimax_integration.py	42	# Step 2: Notification (no response expected)	COMMENT
LOW⚡	tests/test_minimax_integration.py	49	# Step 3: List tools	COMMENT

Modern Structural Boilerplate4 hits · 4 pts

Severity	File	Line	Snippet	Context
LOW	tools/evidence_check.py	188	__all__ = ["check_claim", "check_batch"]	CODE
LOW	tools/capture_filter.py	107	__all__ = ["screen", "reason_detail"]	CODE
LOW	tools/provenance.py	247	__all__ = [	CODE
LOW	tools/threat_scan.py	197	__all__ = ["INVISIBLE_CHARS", "scan_for_threats", "first_threat_message", "quarantine"]	CODE

Self-Referential Comments1 hit · 3 pts

Severity	File	Line	Snippet	Context
MEDIUM	tests/test_feishu_bridge_server.py	220	# Create a handler with mocked request infrastructure	COMMENT