semantica-agi/semantica

Pattern Findings

The scanner identified 16166 distinct pattern matches across 23 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a detector match to inspect in context. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.

Reading the findings table: The Severity column indicates the configured finding weight (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — legacy comment-context matches receive a ×1.5 score weight. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier under the legacy scoring model.

Hyper-Verbose Identifiers8133 hits · 7417 pts

Severity	File	Line	Snippet	Context
LOW⚡	poc_runner.py	26	def _vulnerable_provenance_response(node_id: str, fmt: str) -> dict:	CODE
LOW⚡	tests/test_mcp_package_call_tool.py	21	def test_known_tool_dispatches_to_handler(self):	CODE
LOW⚡	tests/test_mcp_package_call_tool.py	27	def test_unknown_tool_raises_unknown_tool_error(self):	CODE
LOW⚡	tests/test_mcp_package_call_tool.py	31	def test_unknown_tool_error_is_not_a_key_error(self):	CODE
LOW⚡	tests/test_mcp_package_call_tool.py	43	def test_unknown_tool_returns_method_not_found(self):	CODE
LOW⚡	tests/test_mcp_package_call_tool.py	48	def test_handler_key_error_is_internal_error_not_unknown_tool(self):	CODE
LOW⚡	tests/test_mcp_package_call_tool.py	57	def test_known_tool_returns_result_content(self):	CODE
LOW	tests/test_notebooks_plain.py	83	def test_advanced_vector_store():	CODE
LOW	tests/test_semantic_extract_batch_provenance.py	28	def test_semantic_network_batch(self):	CODE
LOW	tests/test_semantic_extract_batch_provenance.py	58	def test_event_detector_batch(self):	CODE
LOW	tests/test_semantic_extract_batch_provenance.py	77	def test_semantic_analyzer_batch(self):	CODE
LOW	tests/test_semantic_extract_batch_provenance.py	98	def test_coreference_resolver_batch(self):	CODE
LOW	tests/conftest.py	49	def _isolate_semantic_extract_config():	CODE
LOW	tests/conftest.py	98	def pytest_collection_modifyitems(config, items):	CODE
LOW⚡	tests/test_security_regression.py	65	def test_comment_bypass_blocked(self):	CODE
LOW⚡	tests/test_security_regression.py	70	def test_comment_hiding_real_query(self):	CODE
LOW⚡	tests/test_security_regression.py	75	def test_prefix_before_select_allowed(self):	CODE
LOW⚡	tests/test_security_regression.py	80	def test_prefix_before_insert_blocked(self):	CODE
LOW⚡	tests/test_security_regression.py	85	def test_multiple_prefixes_then_select(self):	CODE
LOW⚡	tests/test_security_regression.py	93	def test_select_with_insert_keyword_blocked(self):	CODE
LOW⚡	tests/test_security_regression.py	98	def test_case_insensitive_insert(self):	CODE
LOW⚡	tests/test_security_regression.py	107	def test_empty_query_rejected(self):	CODE
LOW⚡	tests/test_security_regression.py	110	def test_whitespace_only_rejected(self):	CODE
LOW⚡	tests/test_security_regression.py	117	def test_namespace_iri_with_hash_fragment_not_treated_as_comment(self):	CODE
LOW⚡	tests/test_security_regression.py	128	def test_real_comment_after_namespace_iri_still_stripped(self):	CODE
LOW⚡	tests/test_security_regression.py	137	def test_inline_prefix_before_select_allowed(self):	CODE
LOW⚡	tests/test_security_regression.py	144	def test_crlf_line_endings_with_prefix(self):	CODE
LOW⚡	tests/test_security_regression.py	151	def test_crlf_multiple_prefixes_then_select(self):	CODE
LOW⚡	tests/test_security_regression.py	160	def test_inline_prefix_before_insert_still_blocked(self):	CODE
LOW⚡	tests/test_security_regression.py	166	def test_long_valid_query_not_rejected_by_is_read_only(self):	CODE
LOW⚡	tests/test_security_regression.py	182	def test_sanitize_label_valid(self):	CODE
LOW⚡	tests/test_security_regression.py	187	def test_sanitize_label_injection(self):	CODE
LOW⚡	tests/test_security_regression.py	192	def test_sanitize_label_special_chars(self):	CODE
LOW⚡	tests/test_security_regression.py	197	def test_value_to_cypher_literal_string_escaping(self):	CODE
LOW⚡	tests/test_security_regression.py	202	def test_value_to_cypher_literal_backslash(self):	CODE
LOW⚡	tests/test_security_regression.py	207	def test_dollar_dollar_breakout_blocked(self):	CODE
LOW⚡	tests/test_security_regression.py	216	def test_graph_name_sanitization(self):	CODE
LOW⚡	tests/test_security_regression.py	233	def test_property_key_injection(self):	CODE
LOW⚡	tests/test_security_regression.py	246	def test_defusedxml_check_exists(self):	CODE
LOW⚡	tests/test_security_regression.py	251	def test_safe_parse_rdf_function_exists(self):	CODE
LOW⚡	tests/test_security_regression.py	264	def test_tolist_on_numpy_like(self):	CODE
LOW⚡	tests/test_security_regression.py	283	def test_regular_list_still_works(self):	CODE
LOW⚡	tests/test_security_regression.py	297	def test_urljoin_resolves_relative(self):	CODE
LOW⚡	tests/test_security_regression.py	305	def test_urljoin_absolute_passthrough(self):	CODE
LOW⚡	tests/test_security_regression.py	313	def test_urljoin_relative_path(self):	CODE
LOW	tests/test_spacy_cache_bounds_and_locks.py	51	def test_cache_evicts_beyond_the_bound(self):	CODE
LOW	tests/test_spacy_cache_bounds_and_locks.py	63	def test_recently_used_entries_survive(self):	CODE
LOW	tests/test_spacy_cache_bounds_and_locks.py	78	def test_bound_never_exceeded_under_concurrent_load(self):	CODE
LOW	tests/test_spacy_cache_bounds_and_locks.py	116	def test_spacy_not_installed_raises_import_error(self):	CODE
LOW	tests/test_spacy_cache_bounds_and_locks.py	131	def test_concurrent_calls_on_one_model_never_overlap(self):	CODE
LOW	tests/test_spacy_cache_bounds_and_locks.py	165	def test_different_models_run_in_parallel(self):	CODE
LOW⚡	tests/test_mcp_server_export_graph.py	42	def test_json_branch_returns_string_data_not_error(self):	CODE
LOW⚡	tests/test_mcp_server_export_graph.py	50	def test_jsonld_branch_returns_string_data_not_error(self):	CODE
LOW⚡	tests/test_mcp_server_export_graph.py	57	def test_turtle_branch_returns_string_data_not_error(self):	CODE
LOW⚡	tests/test_mcp_server_export_graph.py	63	def test_all_rdf_formats_succeed(self):	CODE
LOW⚡	tests/test_mcp_server_export_graph.py	70	def test_progress_is_disabled_for_the_server_process(self):	CODE
LOW⚡	tests/test_mcp_server_export_graph.py	73	def test_unsupported_format_returns_error_not_mislabeled_json(self):	CODE
LOW⚡	tests/test_mcp_server_export_graph.py	81	def test_export_graph_schema_enum_matches_handled_formats(self):	CODE
LOW⚡	tests/test_nlp_embedder_cache_locks.py	103	def test_nlp_model_loaded_exactly_once_under_concurrent_load(self):	CODE
LOW⚡	tests/test_nlp_embedder_cache_locks.py	227	def test_embedder_constructed_exactly_once_under_concurrent_load(self):	CODE
8073 more matches not shown…

Decorative Section Separators1850 hits · 6256 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	docs_check.py	70	# ── 1. docs.json is valid JSON ────────────────────────────────────────────────	COMMENT
MEDIUM⚡	docs_check.py	80	# ── 2. Every nav page exists on disk ─────────────────────────────────────────	COMMENT
MEDIUM	docs_check.py	110	# ── 3. Internal Card hrefs resolve ───────────────────────────────────────────	COMMENT
MEDIUM	docs_check.py	123	# ── 4. No stale repo URLs ─────────────────────────────────────────────────────	COMMENT
MEDIUM	docs_check.py	136	# ── 5. All reference pages have frontmatter ───────────────────────────────────	COMMENT
MEDIUM	docs_check.py	146	# ── 6. No known-wrong class names ────────────────────────────────────────────	COMMENT
MEDIUM	docs_check.py	168	# ── 7. No Python 3.9+ type syntax in code blocks ─────────────────────────────	COMMENT
MEDIUM	docs_check.py	182	# ── 8. index.md covers all 27 modules ────────────────────────────────────────	COMMENT
MEDIUM	docs_check.py	199	# ── 9. JSX component tags are balanced in every page ─────────────────────────	COMMENT
MEDIUM	docs_check.py	229	# ── 10. Mintlify export succeeds (requires Node.js / npx) ────────────────────	COMMENT
MEDIUM	docs_check.py	274	# ── Summary ───────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	osv-scanner.toml	22	# ---------------------------------------------------------------------------	STRING
MEDIUM	osv-scanner.toml	30	# ---------------------------------------------------------------------------	STRING
MEDIUM⚡	poc_runner.py	21	# ─────────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	poc_runner.py	23	# ─────────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	poc_runner.py	97	# ─────────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	poc_runner.py	99	# ─────────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	poc_runner.py	164	# ─────────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	poc_runner.py	167	# ─────────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM	poc_runner.py	257	# ─────────────────────────────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_security_regression.py	175	# ===================================================================	COMMENT
MEDIUM⚡	tests/test_security_regression.py	177	# ===================================================================	COMMENT
MEDIUM⚡	tests/test_security_regression.py	239	# ===================================================================	COMMENT
MEDIUM⚡	tests/test_security_regression.py	241	# ===================================================================	COMMENT
MEDIUM⚡	tests/test_security_regression.py	257	# ===================================================================	COMMENT
MEDIUM⚡	tests/test_security_regression.py	259	# ===================================================================	COMMENT
MEDIUM⚡	tests/test_security_regression.py	290	# ===================================================================	COMMENT
MEDIUM⚡	tests/test_security_regression.py	292	# ===================================================================	COMMENT
MEDIUM⚡	tests/test_nlp_embedder_cache_locks.py	91	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_nlp_embedder_cache_locks.py	93	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_nlp_embedder_cache_locks.py	215	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_nlp_embedder_cache_locks.py	217	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_nlp_embedder_cache_locks.py	48	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_nlp_embedder_cache_locks.py	50	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_nlp_embedder_cache_locks.py	345	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_nlp_embedder_cache_locks.py	347	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	79	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	82	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	84	# ── AI Research Papers (arXiv public data) ────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	271	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	273	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	589	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	591	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	702	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	704	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	829	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	831	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	1152	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	1154	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	1859	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	1861	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	2002	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	2004	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	2083	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	2085	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	2120	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	2122	# ═════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM	tests/test_030_context_graph_realworld_extended.py	40	# ── Context module ─────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tests/test_030_context_graph_realworld_extended.py	57	# ── Export module ──────────────────────────────────────────────────────────────	COMMENT
MEDIUM	tests/test_030_context_graph_realworld_extended.py	62	# ── KG module ──────────────────────────────────────────────────────────────────	COMMENT
1790 more matches not shown…

Docstring Block Structure347 hits · 1735 pts

Severity	File	Line	Snippet	Context
HIGH	CONTRIBUTING.md	378	Extract named entities from text. Args: text: Input text to process model: NER model to use (de	STRING
HIGH	semantica/split/splitter.py	116	Split text into chunks using the specified method(s). Args: text: Input text to split	STRING
HIGH	semantica/pipeline/pipeline_builder.py	439	Serialize pipeline to specified format. Args: pipeline: Pipeline object format	STRING
HIGH	semantica/change_management/managers.py	128	Create and store snapshot with checksum and metadata. Args: graph: Knowledge graph dict wi	STRING
HIGH	semantica/seed/seed_manager.py	149	Register a seed data source. Registers a new source or updates an existing one. The source can be	STRING
HIGH	semantica/seed/seed_manager.py	204	Load seed data from CSV file. Reads a CSV file and converts rows to dictionaries. Automatically	STRING
HIGH	semantica/seed/seed_manager.py	299	Load seed data from JSON file. Reads a JSON file and handles various structures (list, dict with	STRING
HIGH	semantica/seed/seed_manager.py	374	Load seed data from database. Connects to a database and executes a query or exports a table.	STRING
HIGH	semantica/seed/seed_manager.py	457	Load seed data from API. Makes an SSRF-protected HTTP GET request to an API endpoint and parses	STRING
HIGH	semantica/seed/seed_manager.py	566	Load data from registered source. Loads data from a previously registered source using the source's	STRING
HIGH	semantica/embeddings/vector_embedding_manager.py	82	Prepare embeddings and metadata for vector database storage. Formats embeddings and metadata according	STRING
HIGH	semantica/embeddings/methods.py	99	Generate embeddings from data (convenience function). This is a user-friendly wrapper that generates embedding	STRING
HIGH	semantica/embeddings/methods.py	147	Generate text embeddings (convenience function). This is a user-friendly wrapper that generates text embedding	STRING
HIGH	semantica/embeddings/methods.py	207	Calculate similarity between embeddings (convenience function). This is a user-friendly wrapper that calculate	STRING
HIGH	semantica/embeddings/methods.py	252	Pool embeddings (convenience function). This is a user-friendly wrapper that pools embeddings using the specif	STRING
HIGH	semantica/embeddings/methods.py	295	Get a registered embedding method. Args: task: Task type ("generation", "text", "image", "pooling", "p	STRING
HIGH	semantica/embeddings/methods.py	315	List all available embedding methods. Args: task: Optional task type filter Returns: Dict	STRING
HIGH	semantica/embeddings/text_embedder.py	216	Generate embedding for a single text string. This method creates a semantic embedding vector for the i	STRING
HIGH	semantica/embeddings/graph_embedding_manager.py	74	Prepare embeddings for graph database storage. Generates and formats embeddings for both entities (nod	STRING
HIGH	semantica/embeddings/embedding_generator.py	148	Generate embeddings for input data. This method automatically detects the data type if not specified a	STRING
HIGH	semantica/context/policy_engine.py	380	Check if decision complies with policy. Args: decision: Decision to check	STRING
HIGH	semantica/context/agent_memory.py	1681	Return one existing memory item as canonical Markdown. Args: memory_id: Stable identifier of the me	STRING
HIGH	semantica/context/agent_memory.py	1707	Validate and atomically replace one existing memory item. Args: memory_id: Stable identifier of the	STRING
HIGH	semantica/context/context_graph.py	255	Normalize a temporal value to a tz-naive UTC ISO-8601 string. This is the public surface of the normalization logic	STRING
HIGH	semantica/context/context_graph.py	1232	Return one existing node as canonical Markdown. Args: node_id: Stable identifier of the node to exp	STRING
HIGH	semantica/context/context_graph.py	1271	Validate and atomically replace one existing node. Args: node_id: Stable identifier of the node to	STRING
HIGH	semantica/context/context_graph.py	2433	Create a navigable link from a node in this graph to a node in another graph. This enables cross-graph	STRING
HIGH	semantica/context/context_graph.py	2485	Navigate to the target graph and entry node for a cross-graph link. Args: link_id: Link ID	STRING
HIGH	semantica/context/agent_context.py	1005	Link entities in text (if knowledge_graph available). Args: text: Text containing entities	STRING
HIGH	semantica/context/agent_context.py	1058	Build context graph from entities, relationships, or conversations. Args: entities: List o	STRING
HIGH	semantica/context/agent_context.py	1703	Record decision (wrapper for DecisionRecorder). Args: category: Decision category	STRING
HIGH	semantica/context/agent_context.py	1786	Find similar decisions with user controls. Args: scenario: Scenario to find preced	STRING
HIGH	semantica/context/agent_context.py	2030	Get causal chain (wrapper for CausalChainAnalyzer). Args: decision_id: Decision ID	STRING
HIGH	semantica/context/agent_context.py	2095	Multi-hop reasoning for complex queries. Args: start_entity: Starting entity ID	STRING
HIGH	semantica/context/tiers.py	78	Return whether this tier is at least as trustworthy as minimum. Args: minimum: Lowest acce	STRING
HIGH	semantica/core/plugin_registry.py	184	Load and initialize a plugin. This method loads a plugin, resolves its dependencies automatically,	STRING
HIGH	semantica/core/plugin_registry.py	382	Get information about a plugin. Args: plugin_name: Name of plugin Returns:	STRING
HIGH	semantica/core/plugin_registry.py	542	Load and register a plugin from a Python file. This method dynamically imports a Python module, finds	STRING
HIGH	semantica/core/config_manager.py	436	Load configuration from file. Supports YAML and JSON formats. Automatically detects format bas	STRING
HIGH	semantica/core/config_manager.py	516	Load configuration dictionary from file. Args: file_path: Path to configuration file	STRING
HIGH	semantica/core/config_manager.py	564	Load configuration from dictionary. Args: config_dict: Dictionary of configuration values	STRING
HIGH	semantica/core/methods.py	100	Build knowledge base from data sources (convenience function). This is a user-friendly wrapper that constructs	STRING
HIGH	semantica/core/methods.py	173	Execute a processing pipeline (convenience function). This is a user-friendly wrapper that executes a processi	STRING
HIGH	semantica/core/methods.py	222	Initialize Semantica framework (convenience function). This is a user-friendly wrapper that initializes the fr	STRING
HIGH	semantica/core/methods.py	268	Get system status (convenience function). This is a user-friendly wrapper that retrieves system status usi	STRING
HIGH	semantica/core/methods.py	329	Get orchestration method by task and name. This function retrieves a registered orchestration method from the	STRING
HIGH	semantica/core/methods.py	385	List all available orchestration methods. Args: task: Optional task type to filter by Returns:	STRING
HIGH	semantica/core/orchestrator.py	284	Build knowledge base from data sources. This is a high-level method that orchestrates the complete	STRING
HIGH	semantica/core/orchestrator.py	457	Execute a processing pipeline. Args: pipeline: Pipeline object or configuration dictionary	STRING
HIGH	semantica/core/orchestrator.py	696	Validate and filter data sources. This method checks if sources exist (for file paths) or are valid UR	STRING
HIGH	semantica/ingest/gdrive_ingestor.py	172	Ingest data from Google Drive folder. This method lists all files in a Google Drive folder and retriev	STRING
HIGH	semantica/ingest/gdrive_ingestor.py	312	Ingest data from Google Drive file. This method retrieves metadata and optionally downloads content	STRING
HIGH	semantica/ingest/gdrive_ingestor.py	402	Export entire Google Drive or a folder. This method exports all files from a Google Drive folder or th	STRING
HIGH	semantica/ingest/pandas_ingestor.py	109	Ingest data from pandas DataFrame. This method processes a pandas DataFrame and extracts metadata,	STRING
HIGH	semantica/ingest/pandas_ingestor.py	325	Ingest data from JSON file. This method reads a JSON file using pandas and ingests it as a DataFrame.	STRING
HIGH	semantica/ingest/pandas_ingestor.py	375	Ingest data from dictionary. This method converts a dictionary or list of dictionaries to a DataFrame	STRING
HIGH	semantica/ingest/databricks_ingestor.py	427	Ingest data from a Databricks (Delta) table. This method retrieves data from a Unity Catalog table wit	STRING
HIGH	semantica/ingest/databricks_ingestor.py	571	Execute a Databricks SQL query and ingest results. This method executes a SQL query and returns the re	STRING
HIGH	semantica/ingest/databricks_ingestor.py	676	Get schema information for a Unity Catalog table. Args: table_name: Name of the table	STRING
HIGH	semantica/ingest/databricks_ingestor.py	759	List all schemas in a catalog. Args: catalog: Catalog name (uses default if not provided)	STRING
287 more matches not shown…

Excessive Try-Catch Wrapping1756 hits · 1598 pts

Severity	File	Line	Snippet	Context
LOW⚡	docs_check.py	76	except Exception as e:	CODE
MEDIUM	docs_check.py	72	def _() -> list[str]:	CODE
LOW	tests/test_notebooks_plain.py	49	except Exception as e:	CODE
LOW	tests/test_notebooks_plain.py	78	except Exception as e:	CODE
LOW	tests/test_notebooks_plain.py	146	except Exception as e:	CODE
LOW	tests/test_semantic_extract_batch_provenance.py	12	except Exception as e:	CODE
LOW⚡	tests/test_huggingface_impl.py	142	except Exception as e:	CODE
MEDIUM⚡	tests/test_huggingface_impl.py	143	print(f"Error during test execution: {e}", flush=True)	CODE
LOW⚡	tests/test_huggingface_impl.py	152	except Exception as e:	CODE
LOW	tests/test_spacy_cache_bounds_and_locks.py	99	except Exception as exc:	CODE
MEDIUM	tests/test_spacy_cache_bounds_and_locks.py	90	def load_model(i):	CODE
LOW	tests/verify_context_sync.py	183	except Exception as e:	CODE
MEDIUM	tests/test_nlp_embedder_cache_locks.py	112	def worker():	CODE
MEDIUM	tests/test_nlp_embedder_cache_locks.py	175	def worker():	CODE
MEDIUM	tests/test_nlp_embedder_cache_locks.py	244	def worker():	CODE
MEDIUM	tests/test_nlp_embedder_cache_locks.py	275	def worker():	CODE
MEDIUM	tests/test_nlp_embedder_cache_locks.py	313	def worker():	CODE
MEDIUM	tests/test_nlp_embedder_cache_locks.py	408	def worker(i):	CODE
LOW	tests/test_nlp_embedder_cache_locks.py	118	except Exception as exc:	CODE
LOW	tests/test_nlp_embedder_cache_locks.py	181	except Exception as exc:	CODE
LOW	tests/test_nlp_embedder_cache_locks.py	248	except Exception as exc:	CODE
LOW	tests/test_nlp_embedder_cache_locks.py	279	except Exception as exc:	CODE
LOW	tests/test_nlp_embedder_cache_locks.py	317	except Exception as exc:	CODE
LOW	tests/test_nlp_embedder_cache_locks.py	416	except Exception as exc:	CODE
MEDIUM⚡	tests/test_groq_integration.py	33	print("Error: Groq is not available. Check library installation or API key.")	CODE
LOW⚡	tests/test_groq_integration.py	35	except Exception as e:	CODE
MEDIUM⚡	tests/test_groq_integration.py	36	print(f"Error checking provider: {e}")	CODE
LOW⚡	tests/test_groq_integration.py	44	except Exception as e:	CODE
LOW	tests/test_groq_integration.py	58	except Exception as e:	CODE
LOW	tests/test_groq_integration.py	66	except Exception as e:	CODE
LOW	tests/test_groq_integration.py	80	except Exception as e:	CODE
LOW	tests/test_notebooks_verification.py	69	except Exception as e:	STRING
LOW	tests/test_notebooks_verification.py	143	except Exception as e:	STRING
LOW⚡	tests/test_401_temporal_provenance_export.py	361	except Exception as exc:	CODE
LOW	tests/test_progress_tracker_regressions.py	68	except Exception as exc: # pragma: no cover - re-raised below	CODE
MEDIUM	tests/test_progress_tracker_regressions.py	65	def runner():	CODE
LOW	tests/verify_backends.py	34	except Exception as e:	CODE
LOW	tests/verify_backends.py	108	except Exception as e:	CODE
MEDIUM	tests/test_unreleased_changelog_comprehensive.py	650	def reader():	CODE
MEDIUM	tests/test_unreleased_changelog_comprehensive.py	657	def writer():	CODE
MEDIUM	tests/test_unreleased_changelog_comprehensive.py	706	def reader():	CODE
LOW⚡	tests/test_unreleased_changelog_comprehensive.py	630	except Exception as exc:	CODE
LOW	tests/test_unreleased_changelog_comprehensive.py	654	except Exception as exc:	CODE
LOW	tests/test_unreleased_changelog_comprehensive.py	661	except Exception as exc:	CODE
LOW	tests/test_unreleased_changelog_comprehensive.py	685	except Exception as exc:	CODE
LOW	tests/test_unreleased_changelog_comprehensive.py	711	except Exception as exc:	CODE
LOW⚡	tests/test_issue_554_fixes.py	297	except Exception:	CODE
LOW	tests/test_embedding_providers.py	36	except Exception as e:	CODE
LOW	tests/test_embedding_providers.py	66	except Exception as e:	CODE
LOW	tests/test_import.py	10	except Exception as e:	CODE
MEDIUM	tests/test_import.py	11	print(f"Error: {e}")	CODE
LOW	tests/test_relations_llm.py	49	except Exception:	CODE
LOW	tests/test_export_module.py	140	except Exception as e:	CODE
LOW	tests/test_export_module.py	162	except Exception as e:	CODE
LOW	tests/test_export_module.py	216	except Exception as e:	CODE
LOW	tests/test_export_module.py	260	except Exception as e:	CODE
LOW	tests/test_all_features.py	67	except Exception as e:	CODE
LOW⚡	tests/verify_rich_cli.py	91	except Exception as e:	CODE
LOW	tests/test_notebook_15_export.py	81	except Exception as e:	CODE
LOW⚡	tests/test_notebooks_simulation.py	141	except Exception as e:	CODE
1696 more matches not shown…

Unused Imports1871 hits · 1498 pts

Severity	File	Line	Context
LOW	docs_check.py	2	CODE
LOW	poc_runner.py	13	CODE
LOW	poc_runner.py	14	CODE
LOW	poc_runner.py	15	CODE
LOW	poc_runner.py	17	CODE
LOW	tests/test_semantic_extract_batch_provenance.py	10	CODE
LOW	tests/conftest.py	31	CODE
LOW	tests/verify_context_sync.py	4	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	30	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	31	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	32	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	33	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	34	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	34	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	35	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	35	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	35	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	36	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	36	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	41	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	41	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	41	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	41	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	41	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	41	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	41	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	51	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	51	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	51	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	63	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	63	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	63	CODE
LOW	tests/test_030_context_graph_realworld_extended.py	1552	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	4	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	5	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	11	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	14	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	15	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	15	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	16	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	16	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	17	CODE
LOW	tests/test_semantic_extract_deepdive_part2.py	18	CODE
LOW	tests/test_mcp_package_get_provenance.py	17	CODE
LOW	tests/test_redshift_ingestor.py	18	CODE
LOW	tests/test_redshift_ingestor.py	22	CODE
LOW	tests/test_redshift_ingestor.py	30	CODE
LOW	tests/test_mcp_semantic_retrieval.py	563	CODE
LOW	tests/test_groq_integration.py	4	CODE
LOW	tests/test_groq_integration.py	16	CODE
LOW	tests/test_notebooks_verification.py	4	CODE
LOW	tests/test_notebooks_verification.py	10	CODE
LOW	tests/test_notebooks_verification.py	10	CODE
LOW	tests/test_notebooks_verification.py	10	CODE
LOW	tests/test_mcp_package_export_graphml_parquet.py	36	CODE
LOW	tests/test_mcp_package_export_graphml_parquet.py	465	CODE
LOW	tests/test_dynamics365_ingestor.py	7	CODE
LOW	tests/test_dynamics365_ingestor.py	13	CODE
LOW	tests/verify_backends.py	1	CODE
LOW	tests/verify_backends.py	2	CODE
1811 more matches not shown…

Empty Error Handlers204 hits · 1020 pts

Severity	File	Line	Snippet	Context
HIGH	tests/verify_backends.py	116	except:	CODE
HIGH	tests/test_issue_554_fixes.py	297	except Exception:	CODE
HIGH	tests/test_parquet_exporter.py	168	except AttributeError:	CODE
HIGH	tests/test_llm_extraction_fixes.py	40	except ProcessingError as e:	CODE
HIGH	tests/test_relations_llm.py	49	except Exception:	CODE
HIGH	tests/test_notebooks_simulation.py	163	except ImportError:	CODE
HIGH	tests/visualization/test_visualization_advanced.py	64	except Exception:	CODE
HIGH	tests/pipeline/test_pipeline_comprehensive.py	152	except Exception:	CODE
HIGH	tests/context/test_agent_context_decisions.py	289	except Exception:	CODE
HIGH	tests/context/test_agent_context_decisions.py	359	except Exception:	CODE
HIGH	tests/parse/test_parse_comprehensive.py	58	except AttributeError:	CODE
HIGH	tests/parse/test_parse_comprehensive.py	70	except ImportError:	CODE
HIGH	tests/triplet_store/test_jena_store.py	542	except Exception:	CODE
HIGH	tests/semantic_extract/test_llm_smoke_groq.py	9	except Exception:	CODE
HIGH	tests/semantic_extract/test_retry_logic.py	150	except Exception:	CODE
HIGH	tests/semantic_extract/test_retry_logic.py	172	except Exception:	CODE
HIGH	tests/semantic_extract/test_pr482_deepseek_openai.py	227	except Exception:	CODE
HIGH	tests/semantic_extract/test_pr482_deepseek_openai.py	249	except Exception:	CODE
HIGH	tests/semantic_extract/test_pr482_deepseek_openai.py	277	except Exception:	CODE
HIGH	tests/semantic_extract/test_pr482_deepseek_openai.py	306	except Exception:	CODE
HIGH	tests/ontology/test_ontology_advanced.py	72	except Exception as e:	CODE
HIGH	tests/ontology/test_ontology_advanced.py	116	except Exception:	CODE
HIGH	tests/ontology/test_ontology_advanced.py	154	except Exception:	CODE
HIGH	tests/vector_store/test_decision_embedding_pipeline.py	848	except NotImplementedError:	CODE
HIGH	tests/vector_store/test_decision_embedding_pipeline.py	867	except NotImplementedError:	CODE
HIGH	tests/vector_store/test_pgvector_store.py	48	except ImportError:	CODE
HIGH	tests/vector_store/test_pgvector_store.py	128	except Exception:	CODE
HIGH	tests/vector_store/test_pgvector_store.py	41	except ImportError:	CODE
HIGH	tests/vector_store/test_pgvector_store.py	321	except Exception:	CODE
HIGH	tests/vector_store/test_pgvector_store.py	642	except Exception:	CODE
HIGH	tests/vector_store/test_backend_facade_contract.py	131	except Exception:	CODE
HIGH	tests/provenance/test_provenance_edge_cases.py	20	except ValueError:	CODE
HIGH	tests/provenance/test_provenance_edge_cases.py	265	except (TypeError, ValueError):	CODE
HIGH	tests/provenance/test_provenance_edge_cases.py	328	except ValueError:	CODE
HIGH	tests/provenance/test_manager.py	64	except RuntimeError:	CODE
HIGH	tests/kg/test_provenance_integration.py	249	except Exception:	CODE
HIGH	semantica_mcp/mcp/tools/graph.py	38	except Exception:	CODE
HIGH	semantica_mcp/mcp/tools/graph.py	93	except Exception:	CODE
HIGH	semantica_mcp/mcp/tools/graph.py	54	except Exception:	CODE
HIGH	semantica_mcp/mcp/tools/graph.py	114	except Exception:	CODE
HIGH	semantica/cli.py	764	except ImportError:	CODE
HIGH	semantica/cli.py	2621	except ImportError:	CODE
HIGH	semantica/cli.py	5745	except OSError:	CODE
HIGH	semantica/cli.py	5517	except OSError:	CODE
HIGH	semantica/cli.py	5558	except OSError:	CODE
HIGH	semantica/cli.py	5767	except ValueError:	CODE
HIGH	semantica/cli.py	325	except OSError:	CODE
HIGH	semantica/cli.py	2681	except ImportError:	CODE
HIGH	semantica/split/config.py	133	except (ValueError, TypeError):	CODE
HIGH	semantica/split/provenance_tracker.py	144	except AttributeError:	CODE
HIGH	semantica/split/provenance_tracker.py	184	except AttributeError:	CODE
HIGH	semantica/split/methods.py	1704	except (ImportError, OSError):	CODE
HIGH	semantica/split/methods.py	1727	except (ImportError, OSError):	CODE
HIGH	semantica/visualization/utils/layout_algorithms.py	220	except Exception:	CODE
HIGH	semantica/embeddings/config.py	159	except (ValueError, TypeError):	CODE
HIGH	semantica/context/context_retriever.py	2429	except Exception:	CODE
HIGH	semantica/context/context_retriever.py	2954	except Exception:	CODE
HIGH	semantica/context/global_retriever.py	543	except Exception:	CODE
HIGH	semantica/context/global_retriever.py	553	except Exception:	CODE
HIGH	semantica/context/global_retriever.py	588	except Exception:	CODE
144 more matches not shown…

Cross-File Repetition172 hits · 860 pts

Severity	File	Line	Snippet	Context
HIGH	tests/test_llm_groq.py	0	generate_structured() must propagate a top-level json array unchanged.	STRING
HIGH	tests/test_llm_gemini.py	0	generate_structured() must propagate a top-level json array unchanged.	STRING
HIGH	tests/test_llm_anthropic.py	0	generate_structured() must propagate a top-level json array unchanged.	STRING
HIGH	tests/test_llm_novita.py	0	generate_structured() must propagate a top-level json array unchanged.	STRING
HIGH	tests/test_llm_deepseek.py	0	generate_structured() must propagate a top-level json array unchanged.	STRING
HIGH	tests/test_llm_openai.py	0	generate_structured() must propagate a top-level json array unchanged.	STRING
HIGH	tests/test_llm_ollama.py	0	generate_structured() must propagate a top-level json array unchanged.	STRING
HIGH	tests/test_llm_huggingface.py	0	generate_structured() must propagate a top-level json array unchanged.	STRING
HIGH	tests/vector_store/test_milvus_store.py	0	must fail loudly: an empty scan reads the same as an empty source.	STRING
HIGH	tests/vector_store/test_pinecone_store.py	0	must fail loudly: an empty scan reads the same as an empty source.	STRING
HIGH	tests/vector_store/test_qdrant_store.py	0	must fail loudly: an empty scan reads the same as an empty source.	STRING
HIGH	tests/integrations/crewai/test_kg_tool.py	0	returns semantica's real ``entity`` dataclass shape (text/label, no name).	STRING
HIGH	tests/integrations/agno/test_kg_toolkit.py	0	returns semantica's real ``entity`` dataclass shape (text/label, no name).	STRING
HIGH	tests/integrations/agno/test_knowledge_graph.py	0	returns semantica's real ``entity`` dataclass shape (text/label, no name).	STRING
HIGH	tests/integrations/crewai/test_kg_tool.py	0	real semantica ``entity``/``relation`` dataclasses (text/label, subject/object) instead of magicmock-shaped fakes.	STRING
HIGH	tests/integrations/agno/test_kg_toolkit.py	0	real semantica ``entity``/``relation`` dataclasses (text/label, subject/object) instead of magicmock-shaped fakes.	STRING
HIGH	tests/integrations/agno/test_knowledge_graph.py	0	real semantica ``entity``/``relation`` dataclasses (text/label, subject/object) instead of magicmock-shaped fakes.	STRING
HIGH	tests/integrations/google_adk/test_decision_tools.py	0	skip tests if adk is missing, unless testing missing dependency behavior.	STRING
HIGH	tests/integrations/google_adk/test_kg_tools.py	0	skip tests if adk is missing, unless testing missing dependency behavior.	STRING
HIGH	tests/integrations/google_adk/test_session_service.py	0	skip tests if adk is missing, unless testing missing dependency behavior.	STRING
HIGH	tests/integrations/google_adk/test_shared_graph.py	0	skip tests if adk is missing, unless testing missing dependency behavior.	STRING
HIGH	tests/integrations/google_adk/test_init.py	0	skip tests if adk is missing, unless testing missing dependency behavior.	STRING
HIGH	tests/kg/test_provenance_workflows_simple.py	0	read a provenance record back. fails if tracking only minted an id.	STRING
HIGH	tests/kg/test_integration_comprehensive.py	0	read a provenance record back. fails if tracking only minted an id.	STRING
HIGH	tests/kg/test_provenance_workflows.py	0	read a provenance record back. fails if tracking only minted an id.	STRING
HIGH	semantica/split/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/visualization/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/embeddings/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/ingest/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/parse/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/deduplication/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/ontology/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/normalize/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/export/config.py	0	configuration manager for export module - supports .env files, environment variables, and programmatic config.	STRING
HIGH	semantica/split/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/embeddings/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/ingest/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/parse/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/deduplication/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/ontology/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/conflicts/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/normalize/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/kg/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/export/config.py	0	get configuration value with fallback chain: config -> env -> default.	STRING
HIGH	semantica/split/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/embeddings/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/core/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/ingest/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/parse/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/deduplication/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/ontology/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/conflicts/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/normalize/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/kg/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/export/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/visualization/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/triplet_store/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/graph_store/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/vector_store/registry.py	0	list all registered methods. args: task: optional task type to filter by returns: dictionary mapping task types to lists	STRING
HIGH	semantica/split/registry.py	0	clear all registered methods for a task or all tasks. args: task: optional task type to clear (clears all if none)	STRING
112 more matches not shown…

Deep Nesting737 hits · 598 pts

Severity	File	Line	Context
LOW	tests/test_spacy_cache_bounds_and_locks.py	165	CODE
LOW	tests/test_mcp_tool_registry_consistency.py	102	CODE
LOW	tests/test_parquet_exporter.py	151	CODE
LOW	tests/test_graph_store.py	42	CODE
LOW	tests/test_graph_store.py	71	CODE
LOW	tests/test_graph_store.py	101	CODE
LOW	tests/test_mcp_package_persistence.py	332	CODE
LOW	tests/test_mcp_package_persistence.py	358	CODE
LOW	tests/test_salesforce_ingestor.py	34	CODE
LOW	tests/test_bigquery_ingestor.py	44	CODE
LOW	tests/visualization/_plotly_doubles.py	22	CODE
LOW	tests/context/test_context_graph_markdown.py	259	CODE
LOW	tests/ingest/test_cookbook_integration.py	12	CODE
LOW	tests/ingest/test_cookbook_integration.py	18	CODE
LOW	tests/utils/test_normalize_graph_payload.py	311	CODE
LOW	tests/utils/test_normalize_graph_payload.py	391	CODE
LOW	tests/cookbook/test_disease_network_analysis.py	59	CODE
LOW	tests/reasoning/test_temporal_truth_maintenance.py	146	CODE
LOW	tests/kg/test_real_world_scenarios.py	627	CODE
LOW	tests/kg/test_real_world_scenarios.py	735	CODE
LOW	tests/kg/test_integration_comprehensive.py	153	CODE
LOW	tests/kg/test_integration_comprehensive.py	189	CODE
LOW	tests/kg/test_integration_comprehensive.py	415	CODE
LOW	tests/export/test_owl_exporter.py	119	CODE
LOW	tests/export/test_owl_exporter.py	150	CODE
LOW	tests/export/test_vocab_namespace.py	42	CODE
LOW	tests/export/test_cli_export_formats.py	93	CODE
LOW	tests/export/test_yaml_exporter_input_validation.py	88	CODE
LOW	semantica_mcp/mcp/server.py	206	CODE
LOW	semantica_mcp/mcp/session.py	35	CODE
LOW	semantica_mcp/mcp/tools/decisions.py	25	CODE
LOW	semantica_mcp/mcp/tools/decisions.py	173	CODE
LOW	semantica_mcp/mcp/tools/graph.py	16	CODE
LOW	semantica_mcp/mcp/tools/graph.py	64	CODE
LOW	semantica_mcp/mcp/tools/export.py	24	CODE
LOW	semantica_mcp/mcp/tools/retrieval.py	269	CODE
LOW	semantica/cli.py	178	CODE
LOW	semantica/cli.py	331	CODE
LOW	semantica/cli.py	2423	CODE
LOW	semantica/cli.py	2626	CODE
LOW	semantica/cli.py	2708	CODE
LOW	semantica/cli.py	3033	CODE
LOW	semantica/cli.py	4658	CODE
LOW	semantica/cli.py	5266	CODE
LOW	semantica/cli.py	5579	CODE
LOW	semantica/cli.py	2434	CODE
LOW	semantica/cli.py	2719	CODE
LOW	semantica/cli.py	3048	CODE
LOW	semantica/cli.py	4678	CODE
LOW	semantica/cli.py	5588	CODE
LOW	semantica/cli.py	2670	CODE
LOW	semantica/split/config.py	60	CODE
LOW	semantica/split/config.py	114	CODE
LOW	semantica/split/methods.py	162	CODE
LOW	semantica/split/methods.py	597	CODE
LOW	semantica/split/methods.py	861	CODE
LOW	semantica/split/methods.py	999	CODE
LOW	semantica/split/methods.py	1159	CODE
LOW	semantica/split/methods.py	1412	CODE
LOW	semantica/split/sliding_window_chunker.py	149	CODE
677 more matches not shown…

Structural Annotation Overuse172 hits · 323 pts

Severity	File	Line	Snippet	Context
LOW⚡	poc_runner.py	234	# Step 1: import stores it	COMMENT
LOW⚡	poc_runner.py	239	# Step 2: provenance endpoint reflects it into header	COMMENT
LOW⚡	tests/test_mcp_decisions_link.py	303	# Step 1: link	COMMENT
LOW⚡	tests/test_mcp_decisions_link.py	310	# Step 2: trace downstream from cause	COMMENT
LOW⚡	tests/test_notebook_15_export.py	44	# Step 1: JSON Export	COMMENT
LOW⚡	tests/test_notebook_15_export.py	50	# Step 2: CSV Export	COMMENT
LOW⚡	tests/test_notebook_15_export.py	57	# Step 3: RDF Export	COMMENT
LOW	tests/test_notebook_15_export.py	70	# Step 4: Graph Export	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	46	# Step 1: Create Sample Knowledge Graph and Data	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	83	# Step 2: Export to JSON	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	91	# Step 3: Export to RDF	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	134	# Step 5: Export to Graph Formats	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	144	# Step 6: Export to OWL	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	152	# Step 7: Export to Vector Formats	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	168	# Step 8: Export to LPG	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	176	# Step 9: Export to YAML	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	194	# Step 10: Generate Reports	COMMENT
LOW	tests/test_notebooks_simulation.py	116	# Step 4: Export to CSV	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	32	# Step 1: Knowledge Graph Visualization	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	64	# Step 3: Embedding Visualization	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	94	# Step 4: Semantic Network Visualization	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	151	# Step 2: Knowledge Graph Visualization	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	158	# Step 3: Generate Embeddings and Visualize	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	175	# Step 5: Graph Analytics Visualization	COMMENT
LOW	tests/visualization/reproduce_notebooks.py	51	# Step 2: Ontology Visualization	COMMENT
LOW	tests/visualization/reproduce_notebooks.py	116	# Step 5: Advanced Embedding Visualization	COMMENT
LOW	tests/visualization/reproduce_notebooks.py	132	# Step 1: Create Sample Knowledge Graph	COMMENT
LOW	tests/visualization/reproduce_notebooks.py	198	# Step 6: Temporal Data Visualization	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	65	# Step 1: Record multiple banking decisions	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	109	# Step 2: Test basic precedent search	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	118	# Step 3: Test advanced precedent search with KG features	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	144	# Step 5: Test relationship prediction	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	149	# Step 6: Test context insights	COMMENT
LOW	tests/context/test_banking_context_graphs_e2e.py	132	# Step 4: Test decision influence analysis	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	65	# Step 1: Record healthcare decisions across different departments	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	117	# Step 2: Test department-specific precedent search	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	126	# Step 3: Test advanced precedent search with medical context	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	159	# Step 5: Test relationship prediction for medical decisions	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	164	# Step 6: Test healthcare-specific context insights	COMMENT
LOW	tests/context/test_healthcare_context_graphs_e2e.py	141	# Step 4: Test decision influence analysis for medical decisions	COMMENT
LOW⚡	tests/vector_store/test_faiss_delete_vectors.py	500	# Step 1: create vec_0 .. vec_4, record their embeddings	COMMENT
LOW⚡	tests/vector_store/test_faiss_delete_vectors.py	509	# Step 2: reload → delete vec_2 (auto-saves) → reload again	COMMENT
LOW⚡	tests/vector_store/test_faiss_delete_vectors.py	517	# Step 3: add a new vector without an explicit ID	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	122	# Step 1: Initialize DecisionContext	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	126	# Step 2: Record credit decisions	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	133	# Step 3: Find similar decisions for new scenario	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	143	# Step 4: Verify precedent quality	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	148	# Step 5: Get decision context	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	157	# Step 6: Explain decision	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	169	# Step 1: Record fraud decisions using convenience functions	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	183	# Step 2: Find fraud precedents	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	191	# Step 3: Search by entities	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	195	# Step 4: Batch process new fraud scenarios	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	204	# Step 5: Filter decisions by criteria	COMMENT
LOW⚡	tests/provenance/test_real_module_integration.py	92	# Step 1: Ingest document	COMMENT
LOW⚡	tests/provenance/test_real_module_integration.py	100	# Step 2: Split into chunks	COMMENT
LOW⚡	tests/provenance/test_real_module_integration.py	110	# Step 3: Extract entities from chunks	COMMENT
LOW⚡	tests/provenance/test_real_module_integration.py	119	# Step 4: Create relationships	COMMENT
LOW⚡	tests/kg/test_provenance_workflows.py	132	# Step 1: Build graph with provenance	COMMENT
LOW⚡	tests/kg/test_provenance_workflows.py	290	# Step 1: Track similarity calculation	COMMENT
112 more matches not shown…

Fake / Example Data223 hits · 258 pts

Severity	File	Line	Snippet	Context
LOW	README.md	262	graph.add_node("acme_corp", "Organization", name="Acme Corp", industry="SaaS")	CODE
LOW⚡	tests/test_llm_groq.py	12	llm = Groq(model="llama-3.1-8b-instant", api_key="fake-key")	CODE
LOW⚡	tests/test_llm_groq.py	14	assert llm.api_key == "fake-key"	CODE
LOW⚡	tests/test_llm_groq.py	31	llm = Groq(api_key="fake-key")	CODE
LOW	tests/test_llm_groq.py	43	llm = Groq(api_key="fake-key")	CODE
LOW	tests/test_llm_groq.py	57	llm = Groq(api_key="fake-key")	CODE
LOW⚡	tests/test_llm_groq.py	87	llm = Groq(api_key="fake-key")	CODE
LOW	tests/test_mcp_package_extraction.py	22	extracted = Entity("Acme Corp", "ORG", 17, 26, confidence=0.7)	CODE
LOW	tests/test_mcp_package_extraction.py	33	"text": "Acme Corp",	CODE
LOW⚡	tests/test_mcp_package_extraction.py	60	acme = Entity("Acme Corp", "ORG", 16, 25, confidence=0.8)	CODE
LOW⚡	tests/test_mcp_package_extraction.py	62	triplet = Triplet("Alice", "founded", "Acme Corp", confidence=0.7)	CODE
LOW⚡	tests/test_mcp_package_extraction.py	85	"target": "Acme Corp",	CODE
LOW⚡	tests/test_mcp_package_extraction.py	90	{"subject": "Alice", "predicate": "founded", "object": "Acme Corp"}	CODE
LOW⚡	tests/test_mcp_package_extraction.py	100	acme = Entity("Acme Corp", "ORG", 16, 25, confidence=0.8)	CODE
LOW⚡	tests/test_mcp_package_extraction.py	109	triplet = Triplet("Alice", "founded", "Acme Corp", confidence=0.7)	CODE
LOW	tests/test_mcp_package_extraction.py	134	{"text": "Acme Corp", "label": "ORG", "type": "ORG"},	CODE
LOW	tests/test_mcp_package_extraction.py	147	"target": "Acme Corp",	CODE
LOW	tests/test_mcp_package_extraction.py	153	{"subject": "Alice", "predicate": "founded", "object": "Acme Corp"}	CODE
LOW⚡	tests/test_llm_gemini.py	12	gemini = Gemini(model="gemini-pro", api_key="fake-key")	CODE
LOW⚡	tests/test_llm_gemini.py	14	assert gemini.api_key == "fake-key"	CODE
LOW⚡	tests/test_llm_gemini.py	31	gemini = Gemini(api_key="fake-key")	CODE
LOW	tests/test_llm_gemini.py	43	gemini = Gemini(api_key="fake-key")	CODE
LOW	tests/test_llm_gemini.py	55	gemini = Gemini(api_key="fake-key")	CODE
LOW	tests/test_llm_gemini.py	69	gemini = Gemini(api_key="fake-key")	CODE
LOW⚡	tests/test_llm_gemini.py	99	gemini = Gemini(api_key="fake-key")	CODE
LOW	tests/test_dynamics365_ingestor.py	118	"access_token": "fake-token"	CODE
LOW⚡	tests/test_llm_anthropic.py	13	claude = Anthropic(model="claude-sonnet-4-6", api_key="fake-key")	CODE
LOW⚡	tests/test_llm_anthropic.py	15	assert claude.api_key == "fake-key"	CODE
LOW	tests/test_llm_anthropic.py	45	claude = Anthropic(api_key="fake-key")	CODE
LOW	tests/test_llm_anthropic.py	58	claude = Anthropic(api_key="fake-key")	CODE
LOW	tests/test_llm_anthropic.py	70	claude = Anthropic(api_key="fake-key")	CODE
LOW⚡	tests/test_llm_anthropic.py	102	claude = Anthropic(api_key="fake-key")	CODE
LOW⚡	tests/test_unreleased_changelog_comprehensive.py	298	author="user@example.com",	CODE
LOW⚡	tests/test_unreleased_changelog_comprehensive.py	338	author="user@example.com",	CODE
LOW⚡	tests/test_unreleased_changelog_comprehensive.py	355	author="user@example.com",	CODE
LOW⚡	tests/test_unreleased_changelog_comprehensive.py	376	author="user@example.com",	CODE
LOW⚡	tests/test_llm_litellm.py	91	llm = LiteLLM(model="openai/gpt-4o", api_key="fake-key")	CODE
LOW⚡	tests/test_llm_litellm.py	93	assert llm.api_key == "fake-key"	CODE
LOW⚡	tests/test_llm_novita.py	12	llm = Novita(model="deepseek/deepseek-v3.2", api_key="fake-key")	CODE
LOW⚡	tests/test_llm_novita.py	14	assert llm.api_key == "fake-key"	CODE
LOW⚡	tests/test_llm_novita.py	31	llm = Novita(api_key="fake-key")	CODE
LOW	tests/test_llm_novita.py	43	llm = Novita(api_key="fake-key")	CODE
LOW	tests/test_llm_novita.py	55	llm = Novita(api_key="fake-key")	CODE
LOW⚡	tests/test_llm_novita.py	85	llm = Novita(api_key="fake-key")	CODE
LOW	tests/test_issue_554_fixes.py	318	{"text": "Acme Corp", "label": "ORG", "confidence": 0.88},	CODE
LOW	tests/test_issue_554_fixes.py	342	self.assertEqual(result.entities[1].text, "Acme Corp")	CODE
LOW	tests/test_databricks_ingestor.py	164	mock_oauth_sp.return_value = {"Authorization": "Bearer fake-token"}	CODE
LOW	tests/test_parquet_exporter.py	48	"text": "Acme Corp",	CODE
LOW	tests/test_arrow_exporter.py	50	"text": "Acme Corp",	CODE
LOW⚡	tests/test_llm_deepseek.py	12	llm = DeepSeek(model="deepseek-chat", api_key="fake-key")	CODE
LOW⚡	tests/test_llm_deepseek.py	14	assert llm.api_key == "fake-key"	CODE
LOW⚡	tests/test_llm_deepseek.py	31	llm = DeepSeek(api_key="fake-key")	CODE
LOW	tests/test_llm_deepseek.py	43	llm = DeepSeek(api_key="fake-key")	CODE
LOW	tests/test_llm_deepseek.py	55	llm = DeepSeek(api_key="fake-key")	CODE
LOW⚡	tests/test_llm_deepseek.py	85	llm = DeepSeek(api_key="fake-key")	CODE
LOW	tests/test_export_module.py	32	{"id": "e2", "type": "Organization", "name": "Acme Corp", "label": "Acme Corp", "properties": {"loc": "NY"}}	CODE
LOW	tests/test_export_module.py	73	self.assertIn("Acme Corp", exported)	CODE
LOW	tests/test_export_module.py	98	self.assertIn("Acme Corp", content)	CODE
LOW⚡	tests/test_llm_openai.py	12	llm = OpenAI(model="gpt-4", api_key="fake-key")	CODE
LOW⚡	tests/test_llm_openai.py	14	assert llm.api_key == "fake-key"	CODE
163 more matches not shown…

Verbosity Indicators134 hits · 249 pts

Severity	File	Line	Snippet	Context
LOW⚡	poc_runner.py	234	# Step 1: import stores it	COMMENT
LOW⚡	poc_runner.py	239	# Step 2: provenance endpoint reflects it into header	COMMENT
LOW⚡	tests/test_mcp_decisions_link.py	303	# Step 1: link	COMMENT
LOW⚡	tests/test_mcp_decisions_link.py	310	# Step 2: trace downstream from cause	COMMENT
LOW⚡	tests/test_notebook_15_export.py	44	# Step 1: JSON Export	COMMENT
LOW⚡	tests/test_notebook_15_export.py	50	# Step 2: CSV Export	COMMENT
LOW⚡	tests/test_notebook_15_export.py	57	# Step 3: RDF Export	COMMENT
LOW	tests/test_notebook_15_export.py	70	# Step 4: Graph Export	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	46	# Step 1: Create Sample Knowledge Graph and Data	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	83	# Step 2: Export to JSON	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	91	# Step 3: Export to RDF	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	134	# Step 5: Export to Graph Formats	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	144	# Step 6: Export to OWL	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	152	# Step 7: Export to Vector Formats	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	168	# Step 8: Export to LPG	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	176	# Step 9: Export to YAML	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	194	# Step 10: Generate Reports	COMMENT
LOW	tests/test_notebooks_simulation.py	116	# Step 4: Export to CSV	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	32	# Step 1: Knowledge Graph Visualization	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	64	# Step 3: Embedding Visualization	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	94	# Step 4: Semantic Network Visualization	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	151	# Step 2: Knowledge Graph Visualization	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	158	# Step 3: Generate Embeddings and Visualize	COMMENT
LOW⚡	tests/visualization/reproduce_notebooks.py	175	# Step 5: Graph Analytics Visualization	COMMENT
LOW	tests/visualization/reproduce_notebooks.py	51	# Step 2: Ontology Visualization	COMMENT
LOW	tests/visualization/reproduce_notebooks.py	116	# Step 5: Advanced Embedding Visualization	COMMENT
LOW	tests/visualization/reproduce_notebooks.py	132	# Step 1: Create Sample Knowledge Graph	COMMENT
LOW	tests/visualization/reproduce_notebooks.py	198	# Step 6: Temporal Data Visualization	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	65	# Step 1: Record multiple banking decisions	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	109	# Step 2: Test basic precedent search	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	118	# Step 3: Test advanced precedent search with KG features	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	144	# Step 5: Test relationship prediction	COMMENT
LOW⚡	tests/context/test_banking_context_graphs_e2e.py	149	# Step 6: Test context insights	COMMENT
LOW	tests/context/test_banking_context_graphs_e2e.py	132	# Step 4: Test decision influence analysis	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	65	# Step 1: Record healthcare decisions across different departments	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	117	# Step 2: Test department-specific precedent search	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	126	# Step 3: Test advanced precedent search with medical context	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	159	# Step 5: Test relationship prediction for medical decisions	COMMENT
LOW⚡	tests/context/test_healthcare_context_graphs_e2e.py	164	# Step 6: Test healthcare-specific context insights	COMMENT
LOW	tests/context/test_healthcare_context_graphs_e2e.py	141	# Step 4: Test decision influence analysis for medical decisions	COMMENT
LOW⚡	tests/vector_store/test_faiss_delete_vectors.py	500	# Step 1: create vec_0 .. vec_4, record their embeddings	COMMENT
LOW⚡	tests/vector_store/test_faiss_delete_vectors.py	509	# Step 2: reload → delete vec_2 (auto-saves) → reload again	COMMENT
LOW⚡	tests/vector_store/test_faiss_delete_vectors.py	517	# Step 3: add a new vector without an explicit ID	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	122	# Step 1: Initialize DecisionContext	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	126	# Step 2: Record credit decisions	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	133	# Step 3: Find similar decisions for new scenario	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	143	# Step 4: Verify precedent quality	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	148	# Step 5: Get decision context	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	157	# Step 6: Explain decision	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	169	# Step 1: Record fraud decisions using convenience functions	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	183	# Step 2: Find fraud precedents	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	191	# Step 3: Search by entities	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	195	# Step 4: Batch process new fraud scenarios	COMMENT
LOW⚡	tests/vector_store/test_end_to_end_decision_tracking.py	204	# Step 5: Filter decisions by criteria	COMMENT
LOW⚡	tests/provenance/test_real_module_integration.py	92	# Step 1: Ingest document	COMMENT
LOW⚡	tests/provenance/test_real_module_integration.py	100	# Step 2: Split into chunks	COMMENT
LOW⚡	tests/provenance/test_real_module_integration.py	110	# Step 3: Extract entities from chunks	COMMENT
LOW⚡	tests/provenance/test_real_module_integration.py	119	# Step 4: Create relationships	COMMENT
LOW⚡	tests/kg/test_provenance_workflows.py	132	# Step 1: Build graph with provenance	COMMENT
LOW⚡	tests/kg/test_provenance_workflows.py	290	# Step 1: Track similarity calculation	COMMENT
74 more matches not shown…

Redundant / Tautological Comments134 hits · 199 pts

Severity	File	Line	Snippet	Context
LOW	tests/test_huggingface_impl.py	92	# Check if ANY call contained the correct formatting	COMMENT
LOW	tests/test_semantic_extract_deepdive_part2.py	185	# Check if participants were extracted (simple capitalization rule)	COMMENT
LOW	tests/test_parquet_exporter.py	157	# Check if codec is available in this pyarrow build	COMMENT
LOW	tests/test_semantic_extract_deepdive.py	199	# Check if basic components are in the output (format might vary slightly)	COMMENT
LOW	tests/test_reproduce_issue_176.py	33	# Check if generate_typed was called with max_tokens	COMMENT
LOW	tests/test_reproduce_issue_176.py	62	# Check if generate_typed was called with max_tokens	COMMENT
LOW	tests/test_reproduce_issue_176.py	91	# Check if generate_typed was called with max_tokens	COMMENT
LOW	tests/test_ner_configurations.py	180	# Check if labels match custom keys	COMMENT
LOW	tests/test_hf_deep_verify.py	103	# Check if relation is found	COMMENT
LOW	tests/test_hf_deep_verify.py	160	# Check if load_ner_model was called with runtime model	COMMENT
LOW⚡	tests/test_notebooks_simulation.py	184	# Check if `export` exists dynamically or if notebook is wrong.	COMMENT
LOW	tests/ingest/test_web_ingestor.py	384	# Set limit to 2 pages	COMMENT
LOW	tests/parse/test_notebook_03.py	96	# Check if xml_data has elements attribute	COMMENT
LOW	tests/parse/test_parse_comprehensive.py	62	# Check if module has get_progress_tracker before patching to avoid AttributeError	COMMENT
LOW⚡	tests/utils/test_custom_method_can_refuse.py	147	# Read the file rather than import it: some of these modules pull in	COMMENT
LOW	tests/semantic_extract/test_retry_logic.py	123	# Check if generate_typed was called with max_retries=7 for chunks	COMMENT
LOW	tests/semantic_extract/test_performance.py	186	# Check if parallel was indeed parallel (faster)	COMMENT
LOW	tests/semantic_extract/test_performance.py	243	# Check if subject matches "Apple Inc." even though text said "Apple"	COMMENT
LOW	tests/semantic_extract/test_robustness_fallback.py	21	# Check if they are the capitalized words	COMMENT
LOW	tests/vector_store/test_simple_end_to_end.py	86	# Check if they are RetrievedContext objects or dicts	COMMENT
LOW⚡	tests/provenance/test_all_modules.py	32	# Check if provenance parameter exists (future integration)	COMMENT
LOW⚡	tests/provenance/test_all_modules.py	122	# Check if using unified backend	COMMENT
LOW	semantica/split/methods.py	369	# Check if adding this sentence would exceed limits	COMMENT
LOW	semantica/split/methods.py	912	# Check if sentence contains entity boundaries	COMMENT
LOW	semantica/split/methods.py	1056	# Check if sentence is part of a triplet	COMMENT
LOW	semantica/split/structural_chunker.py	261	# Check if adding this element would exceed max size	COMMENT
LOW	semantica/split/semantic_chunker.py	165	# Check if adding this sentence would exceed chunk size	COMMENT
LOW	semantica/visualization/temporal_visualizer.py	178	# Check if both entities exist in our timeline map	COMMENT
LOW	semantica/visualization/temporal_visualizer.py	226	# Check if both source and target are active at t	COMMENT
LOW	semantica/visualization/temporal_visualizer.py	261	# Check if m_data is complex or simple list	COMMENT
LOW	semantica/visualization/ontology_visualizer.py	184	# Check if it's a semantic model or semantic network	COMMENT
LOW	semantica/visualization/ontology_visualizer.py	429	# Check if property belongs to class (via domain or direct property list)	COMMENT
LOW	semantica/visualization/semantic_network_visualizer.py	151	# Check if it's a semantic model from ontology generator	COMMENT
LOW	semantica/pipeline/pipeline_validator.py	195	# Check if pipeline has steps	COMMENT
LOW	semantica/pipeline/resource_scheduler.py	320	# Check if GPU resource exists	COMMENT
LOW	semantica/pipeline/failure_handler.py	159	# Check if error is retryable	COMMENT
LOW	semantica/pipeline/failure_handler.py	303	# Check if error type is in retryable list	COMMENT
LOW	semantica/change_management/version_storage.py	342	# Check if version already exists	COMMENT
LOW	semantica/change_management/ontology_version_manager.py	448	# Check if it's a versioned import	COMMENT
LOW	semantica/change_management/ontology_version_manager.py	454	# Check if we have this version	COMMENT
LOW	semantica/context/context_retriever.py	584	# Check if knowledge_graph implements GraphStore protocol (has query method)	COMMENT
LOW	semantica/context/context_retriever.py	676	# Check if entity type semantically matches query keywords	COMMENT
LOW	semantica/context/context_retriever.py	717	# Check if relationship type or its synonyms appear in query	COMMENT
LOW	semantica/context/context_retriever.py	1249	# Check if knowledge_graph implements GraphStore protocol	COMMENT
LOW	semantica/context/context_retriever.py	2007	# Check if entity is in related entities	COMMENT
LOW	semantica/context/global_retriever.py	387	# Check if dict is {community_id: report} or single report dict	COMMENT
LOW	semantica/context/agent_memory.py	735	# Check if it's a conversation item	COMMENT
LOW	semantica/context/context_graph.py	3964	# Check if decisions exist - if not, skip adding relationship	COMMENT
LOW	semantica/context/context_graph.py	3972	# Check if nodes are decision nodes - if not, skip adding relationship	COMMENT
LOW	semantica/core/plugin_registry.py	215	# Check if plugin is already loaded (return existing instance)	COMMENT
LOW	semantica/core/plugin_registry.py	222	# Check if plugin is registered	COMMENT
LOW	semantica/core/plugin_registry.py	464	# Check if path exists and is a directory	COMMENT
LOW	semantica/core/config_manager.py	227	# Check if it's a valid float (allows one decimal point)	COMMENT
LOW	semantica/core/lifecycle.py	137	# Check if already started	COMMENT
LOW	semantica/core/lifecycle.py	233	# Check if already stopped	COMMENT
LOW	semantica/core/orchestrator.py	717	# Check if source is valid:	COMMENT
LOW	semantica/ingest/repo_ingestor.py	213	# Read file content	COMMENT
LOW	semantica/ingest/gdrive_ingestor.py	353	# Check if file is Google Workspace file (needs export)	COMMENT
LOW	semantica/ingest/methods.py	1488	# Check if it looks like a URL	COMMENT
LOW	semantica/ingest/methods.py	1619	# Check if it's a feed URL	COMMENT
74 more matches not shown…

Hallucination Indicators13 hits · 155 pts

Severity	File	Line	Snippet	Context
CRITICAL⚡	tests/explorer/test_explorer_api.py	910	client.app.state.session.graph.add_node("ws_node", node_type="entity", content="WebSocket Node")	CODE
CRITICAL⚡	tests/explorer/test_explorer_api.py	1224	from semantica.utils.helpers import classify_path_distance # noqa: E402	CODE
CRITICAL	tests/explorer/test_explorer_api.py	474	client.app.state.session.graph.add_node("policy_1", node_type="policy", content="Data policy")	CODE
CRITICAL	tests/explorer/test_explorer_api.py	475	client.app.state.session.graph.add_edge("decision_1", "policy_1", edge_type="violates")	CODE
CRITICAL	tests/explorer/test_explorer_entrypoints.py	124	server.app.state.session.graph.add_node(	CODE
CRITICAL⚡	tests/semantic_extract/test_pr482_deepseek_openai.py	140	provider.client.chat.completions.create.assert_called_once()	CODE
CRITICAL⚡	tests/provenance/test_timestamp_timezones.py	19	from semantica.utils.helpers import utc_now	CODE
CRITICAL	tests/export/test_timestamp_timezones.py	20	from semantica.utils.helpers import utc_now, utc_now_iso	CODE
CRITICAL	docs/guides/distance-intelligence.md	70	from semantica.utils.helpers import classify_path_distance	CODE
CRITICAL	docs/guides/distance-intelligence.md	305	from semantica.utils.helpers import classify_path_distance	CODE
CRITICAL	docs/guides/distance-intelligence.md	473	from semantica.utils.helpers import classify_path_distance	CODE
CRITICAL	semantica/ingest/cassandra_ingestor.py	213	keyspace_metadata = self.connector.cluster.metadata.keyspaces.get(	CODE
CRITICAL⚡	semantica/vector_store/weaviate_store.py	75	vectorizer_config=weaviate.classes.config.Configure.vectorizer.none(),	CODE

Self-Referential Comments48 hits · 154 pts

Severity	File	Line	Snippet	Context
MEDIUM	tests/test_semantic_extract_deepdive.py	179	# Create a valid and invalid triplet	COMMENT
MEDIUM	tests/test_amazon_neptune.py	296	# Create a real AuthManager base class for testing (not MagicMock)	COMMENT
MEDIUM	tests/test_pipeline_orchestration.py	63	# Create a pipeline first	COMMENT
MEDIUM	tests/test_pipeline_orchestration.py	126	# Define a simple handler	COMMENT
MEDIUM	tests/change_management/test_performance.py	568	# Initialize test classes	COMMENT
MEDIUM	tests/embeddings/test_text_embedder.py	13	# Create a mock for sentence_transformers.SentenceTransformer	COMMENT
MEDIUM	tests/embeddings/test_text_embedder.py	17	# Create a mock for fastembed.TextEmbedding	COMMENT
MEDIUM⚡	tests/context/test_causal_analyzer.py	374	# Create a cycle path	COMMENT
MEDIUM⚡	tests/context/test_causal_analyzer.py	384	# Create a path without cycle	COMMENT
MEDIUM	tests/context/test_erasure_coordinator.py	1170	# Create a lightweight memory mock optimized for speed	COMMENT
MEDIUM	tests/context/test_context_graph_decisions.py	483	# Create a complex network	COMMENT
MEDIUM	tests/context/test_context_graph_decisions.py	556	# Create a loop: decision_001 -> decision_002 -> decision_003 -> decision_001	COMMENT
MEDIUM	tests/context/test_context_graphs_examples.py	192	# Create a test policy	COMMENT
MEDIUM	tests/context/test_context_graphs_examples.py	423	# Create a network of 100 decisions	COMMENT
MEDIUM	tests/context/test_context_graphs_examples.py	444	# Create a mix of relationship types	COMMENT
MEDIUM	tests/ingest/test_web_ingestor.py	294	# Create a chain of links: P1 -> P2 -> P3	COMMENT
MEDIUM	tests/ingest/test_web_ingestor.py	355	# Create a chain: P1 -> P2 -> P3 -> P4	COMMENT
MEDIUM	tests/ingest/test_submodules.py	95	# Create a real temporary CSV file	COMMENT
MEDIUM	tests/ingest/test_submodules.py	410	# Create a real temp dir and populate it	COMMENT
MEDIUM	tests/parse/test_docling_parser.py	34	# Create a dummy file for Path.exists()	COMMENT
MEDIUM	tests/explorer/test_ontology_subissue3.py	779	# Create an alignment first so coverage score can be non-zero.	STRING
MEDIUM⚡	tests/semantic_extract/test_retry_logic.py	183	# Create a mock entity	COMMENT
MEDIUM	tests/semantic_extract/test_retry_logic.py	212	# Create a mock entity	COMMENT
MEDIUM	tests/semantic_extract/test_groq_real_world.py	349	# Create a larger batch by duplicating sample texts	COMMENT
MEDIUM⚡	tests/semantic_extract/test_robustness_fallback.py	88	# Create a relation manually to ensure we have one to convert	COMMENT
MEDIUM	tests/semantic_extract/test_cache_backends.py	636	# Create the schema via the safe backend.	COMMENT
MEDIUM	tests/vector_store/test_decision_embedding_pipeline.py	411	# Create a real VectorStore with FAISS backend	COMMENT
MEDIUM	tests/integrations/google_adk/test_shared_graph.py	75	# Create a session using the same graph.	COMMENT
MEDIUM	tests/provenance/test_semantic_extract_provenance.py	276	# Create a lineage chain: document -> chunk -> entity	COMMENT
MEDIUM⚡	tests/kg/test_registry.py	396	# Define a custom algorithm class	COMMENT
MEDIUM⚡	tests/kg/test_link_predictor.py	378	# Create a more complex graph for testing	COMMENT
MEDIUM	tests/kg/test_link_predictor.py	594	# Create a larger sparse graph	COMMENT
MEDIUM	tests/kg/test_path_finder.py	225	# Create a graph with multiple paths	COMMENT
MEDIUM	tests/kg/test_path_finder.py	677	# Create a large sparse graph	COMMENT
MEDIUM⚡	tests/kg/test_enhanced_algorithms_e2e.py	614	# Create a larger graph	COMMENT
MEDIUM	tests/kg/test_core_components.py	63	# Create a dummy seed file	COMMENT
MEDIUM	tests/kg/test_node_embeddings.py	41	# Create a simple adjacency structure	COMMENT
MEDIUM	tests/kg/test_graph_builder_with_graph_store.py	31	# Create a mock GraphStore facade	COMMENT
MEDIUM	semantica/visualization/temporal_visualizer.py	666	# Create a bar for the pattern duration	COMMENT
MEDIUM	semantica/change_management/version_storage.py	594	# Create a deterministic JSON representation	COMMENT
MEDIUM	semantica/embeddings/vector_embedding_manager.py	318	# Create a copy to avoid modifying original	COMMENT
MEDIUM	semantica/context/agent_context.py	293	# Create a minimal DecisionQuery that delegates to ContextGraph	COMMENT
MEDIUM	semantica/semantic_extract/cache.py	691	# Create a stable string representation of params	COMMENT
MEDIUM	semantica/semantic_extract/providers.py	1772	# Create a copy of text with markers inserted	COMMENT
MEDIUM⚡	semantica/semantic_extract/relation_extractor.py	513	# Create a weak relation	COMMENT
MEDIUM	semantica/export/rdf_exporter.py	694	# Create a shallow copy of the graph structure to avoid modifying original	COMMENT
MEDIUM	examples/parquet_export_example.py	19	# Create a temporary directory for outputs	COMMENT
MEDIUM	examples/arrow_export_example.py	17	# Create a temporary directory for outputs	COMMENT

Over-Commented Block142 hits · 130 pts

Severity	File	Line	Snippet	Context
LOW	.pre-commit-config.yaml	61	# Removed slow hooks for faster development:	COMMENT
LOW	pyproject.toml	241	gpu = [	COMMENT
LOW	.checkov.yaml	1	# Checkov configuration.	COMMENT
LOW	osv-scanner.toml	21		COMMENT
LOW	requirements-ci.txt	441	--hash=sha256:4f56daa940913d3f09d589c191c74e5a6d51762b3a9e37dd53b7437afd6cda15 \	COMMENT
LOW	requirements-ci.txt	801	# click-plugins	COMMENT
LOW	requirements-ci.txt	2001	--hash=sha256:ef7c3c97f4311c7be57e2986629df89d49cb434dbff78eafcd48c2bff986b15a \	COMMENT
LOW	requirements-ci.txt	2021	# openai	COMMENT
LOW	requirements-ci.txt	2041	# sentence-transformers	COMMENT
LOW	requirements-ci.txt	2081	--hash=sha256:897eb64da762549ef610698fca5e9675195ec6ac8ec7f19d81ce1ca20c876057 \	COMMENT
LOW	requirements-ci.txt	2161	--hash=sha256:c3f4ccbd276696f4b19c54618d4fb18f9fc24b0aef02acf704b23f487daa1011	COMMENT
LOW	requirements-ci.txt	2361	# ipykernel	COMMENT
LOW	requirements-ci.txt	3941	# d3graph	COMMENT
LOW	requirements-ci.txt	3961	# rapidocr	COMMENT
LOW	requirements-ci.txt	4221	# pymilvus	COMMENT
LOW	requirements-ci.txt	4241	# google-adk	COMMENT
LOW	requirements-ci.txt	4301	--hash=sha256:cf52e1f61d229496da17dc7ab54acdee627357e7008fd4fecba3d0ba2937fa58 \	COMMENT
LOW	requirements-ci.txt	4441	--hash=sha256:f7401aebd7f581d7f83a439d87d474999317ee099218e5ad25d125290990ba65 \	COMMENT
LOW	requirements-ci.txt	5101	# docling-slim	COMMENT
LOW	requirements-ci.txt	5241	# instructor	COMMENT
LOW	requirements-ci.txt	5361	# pytest-asyncio	COMMENT
LOW	requirements-ci.txt	5381	# pandas	COMMENT
LOW	requirements-ci.txt	5821	# tiktoken	COMMENT
LOW	requirements-ci.txt	5841	# langsmith	COMMENT
LOW	requirements-ci.txt	5861	# via	COMMENT
LOW	requirements-ci.txt	6141	# via	COMMENT
LOW	requirements-ci.txt	6801	# jupyterlab	COMMENT
LOW	requirements-ci.txt	6821	# transformers	COMMENT
LOW	requirements-ci.txt	6961	# docling-core	COMMENT
LOW	requirements-ci.txt	6981	# azure-storage-blob	COMMENT
LOW	requirements-ci.txt	7001	# opentelemetry-api	COMMENT
LOW	tests/test_mcp_package_export_graphml_parquet.py	141	"""The old code passed the ContextGraph object directly. Verify the	COMMENT
LOW	tests/test_hf_deep_verify.py	121	# Let's check the code I read earlier.	COMMENT
LOW	tests/ingest/test_notebook_06.py	81	# "document". The literal previously set "source" twice, so the	COMMENT
LOW	tests/ingest/test_notebook_06.py	101	)	COMMENT
LOW	tests/ingest/test_submodules.py	61	ingestor = RESTIngestor()	COMMENT
LOW	tests/graph_store/test_cypher_injection.py	161		COMMENT
LOW	tests/graph_store/test_cypher_injection.py	301	# BLOCKER 2 regression: GraphStore.get_neighbors hops forwarding	COMMENT
LOW	tests/vector_store/test_pinecone_removal.py	1	# This test file has been updated as Pinecone support has been re-added to Semantica.	COMMENT
LOW	tests/normalize/test_data_cleaner.py	101	threshold=0.8,	COMMENT
LOW	tests/provenance/test_all_modules.py	61		COMMENT
LOW	semantica_mcp/mcp/tools/export.py	61	# GraphMLExporter does not exist. GraphExporter is the correct	COMMENT
LOW	explorer/tests/markdownContentViewer.test.ts	181	// aria-describedby="footnote-label"	COMMENT
LOW	explorer/tests/markdownContentViewer.test.ts	501	}));	COMMENT
LOW	explorer/tests/markdownContentViewer.test.ts	521	// renderToString calls (no hidden state that would differ if focusedMode	COMMENT
LOW	explorer/tests/markdownContentViewer.test.ts	541	assert.deepEqual(	COMMENT
LOW	explorer/tests/markdownContentViewer.test.ts	561	// WHY THIS CANNOT BE TESTED WITH renderToString:	COMMENT
LOW	explorer/tests/markdownContentViewer.test.ts	581	// equals defaultMode, so JSX and useLayoutEffect agree, and no visible change	COMMENT
LOW	…rc/workspaces/GraphWorkspace/MarkdownContentViewer.tsx	101	const sourceTabId = `${baseId}-tab-source`;	COMMENT
LOW	…rc/workspaces/GraphWorkspace/MarkdownContentViewer.tsx	161	// When the viewed resource/node changes, reset focusedModeRef to match the	COMMENT
LOW	…rc/workspaces/GraphWorkspace/MarkdownContentViewer.tsx	401	const MARKDOWN_COMPONENTS: Components = {	COMMENT
LOW	docs/integrations/looker.md	181		COMMENT
LOW	docs/integrations/looker.md	221	# "content_type": "lookml_model",	COMMENT
LOW	docs/integrations/redshift.md	261	text_fields=["name", "notes"], # columns joined as document text; omit to auto-select	COMMENT
LOW	docs/integrations/bigquery.md	241	# "id": "ORD-12345",	COMMENT
LOW	docs/integrations/salesforce.md	241	print(f"Created {len(documents)} documents")	COMMENT
LOW	docs/reference/context.md	721	\| `to_dict()` \| `Dict` \| Serialized receipt, safe to persist as an audit record \|	COMMENT
LOW	semantica/__init__.py	21		COMMENT
LOW	semantica/split/provenance_tracker.py	401	latest_prov = lineage_list[-1] # List is parent -> child (wait, let me check get_chunk_lineage implementation)	COMMENT
LOW	semantica/seed/seed_usage.md	501	manager = SeedDataManager()	COMMENT
82 more matches not shown…

Cross-Language Confusion20 hits · 108 pts

Severity	File	Line	Snippet	Context
HIGH⚡	tests/test_cli_commands.py	1606	"""A 'premises' key present but not a list (e.g. YAML null) must be	STRING
HIGH⚡	tests/test_cli_commands.py	1652	"""A 'observations' key present but not a list (e.g. YAML null)	STRING
HIGH⚡	tests/test_salesforce_ingestor.py	1355	"""None (null) field values are kept as None."""	STRING
HIGH	tests/explorer/test_ontology_load_custom_name.py	123	``customName \|\| undefined``). Storing "" verbatim would leave a nameless	STRING
HIGH⚡	tests/kg/test_similarity_calculator.py	657	# Correlation between constant vectors should be 0 (undefined)	COMMENT
HIGH⚡	tests/kg/test_similarity_calculator.py	661	# Correlation between constant and varying vector should be 0 (undefined)	COMMENT
HIGH	semantica/explorer/app.py	209	"or run `cd explorer && npm ci && npm run build` from the repo root."	CODE
HIGH	semantica/utils/helpers.py	857	collection to null, and treating that as "no records under this key" is	STRING
HIGH	semantica/triplet_store/rdf4j_store.py	397	# default to context=null, which would change "all graphs" semantics	COMMENT
HIGH⚡	semantica/semantic_extract/methods.py	2167	→ valid_from: "2014-05-01", valid_until: null, temporal_confidence: 0.90, temporal_source_text: "May 2014"	CODE
HIGH⚡	semantica/semantic_extract/methods.py	2170	→ valid_from: "Q3 2020", valid_until: null, temporal_confidence: 0.75, temporal_source_text: "since Q3 2020"	CODE
HIGH⚡	semantica/semantic_extract/methods.py	2173	→ valid_from: "last year", valid_until: null, temporal_confidence: 0.50, temporal_source_text: "Last year"	CODE
HIGH⚡	semantica/semantic_extract/methods.py	2179	→ valid_from: null, valid_until: null, temporal_confidence: 0.00, temporal_source_text: null	CODE
HIGH⚡	semantica/semantic_extract/methods.py	2187	"valid_from": "2014-05-01", "valid_until": null,	CODE
HIGH	semantica/kg/temporal_query_rewriter.py	214	' "temporal_phrase": the verbatim temporal expression (or null),\n'	CODE
HIGH	semantica/kg/temporal_query_rewriter.py	215	' "temporal_intent": one of "before", "after", "at", "during", "between", or null,\n'	CODE
HIGH	examples/explorer_deterministic_rendering_example.py	16	cd explorer && npm install && cd ..	STRING
HIGH	examples/explorer_deterministic_rendering_example.py	26	cd explorer && npm run dev	STRING
HIGH	examples/explorer_deterministic_rendering_example.py	146	print(" cd explorer && npm install && cd ..\n")	CODE
HIGH	examples/explorer_deterministic_rendering_example.py	156	print(" 2. Frontend: cd explorer && npm run dev")	CODE

Modern Structural Boilerplate104 hits · 101 pts

Severity	File	Line	Snippet	Context
LOW	semantica_mcp/mcp/__init__.py	42	__all__ = ["SemanticaMCPServer", "main", "__version__"]	CODE
LOW	semantica_mcp/mcp/tools/__init__.py	24	__all__ = ["TOOL_DEFINITIONS"]	CODE
LOW	semantica_mcp/mcp/resources/__init__.py	8	__all__ = ["RESOURCE_DEFINITIONS", "handle_resource_read"]	CODE
LOW	semantica/__init__.py	196	__all__ = []	CODE
LOW	semantica/split/__init__.py	107	__all__ = [	CODE
LOW	semantica/visualization/config.py	173	def _set_defaults(self) -> None:	CODE
LOW	semantica/visualization/config.py	240	def set_method_config(self, method_name: str, config: Dict[str, Any]) -> None:	CODE
LOW	semantica/visualization/visualization_provenance.py	69	__all__ = ['VisualizerWithProvenance']	CODE
LOW	semantica/visualization/__init__.py	138	__all__ = [	CODE
LOW	semantica/visualization/utils/__init__.py	44	__all__ = [	CODE
LOW	semantica/pipeline/failure_handler.py	272	def set_retry_policy(self, step_type: str, policy: RetryPolicy) -> None:	CODE
LOW	semantica/pipeline/failure_handler.py	468	def set_retry_policy(self, step_type: str, policy: RetryPolicy) -> None:	CODE
LOW	semantica/pipeline/failure_handler.py	482	def set_fallback_strategy(self, strategy: str) -> None:	CODE
LOW	semantica/pipeline/__init__.py	79	__all__ = [	CODE
LOW	semantica/pipeline/pipeline_provenance.py	109	__all__ = ['PipelineWithProvenance']	CODE
LOW	semantica/change_management/__init__.py	38	__all__ = [	CODE
LOW	semantica/evals/__init__.py	23	__all__ = [	CODE
LOW	semantica/seed/__init__.py	76	__all__ = [	CODE
LOW	semantica/embeddings/embeddings_provenance.py	84	__all__ = ['EmbeddingGeneratorWithProvenance']	CODE
LOW	semantica/embeddings/__init__.py	108	__all__ = [	CODE
LOW	semantica/embeddings/text_embedder.py	193	def set_model(self, method: str, model_name: str, **config) -> None:	CODE
LOW	semantica/embeddings/embedding_generator.py	100	def set_text_model(self, method: str, model_name: str, **config) -> None:	CODE
LOW	semantica/context/decision_methods.py	910	__all__ = [	CODE
LOW	semantica/context/__init__.py	163	__all__ = [	CODE
LOW	semantica/context/drift_search.py	483	def set_knowledge_graph(self, graph: Any) -> None:	CODE
LOW	semantica/context/context_provenance.py	70	__all__ = ['ContextManagerWithProvenance']	CODE
LOW	semantica/context/erasure.py	51	__all__ = [	CODE
LOW	semantica/core/config_manager.py	628	def set_config(self, config: Config, validate: bool = True) -> None:	CODE
LOW	semantica/core/__init__.py	65	__all__ = [	CODE
LOW	semantica/ingest/sap_ingestor.py	66	__all__ = [	CODE
LOW	semantica/ingest/powerbi_ingestor.py	72	__all__ = [	CODE
LOW	semantica/ingest/__init__.py	506	__all__ = [	CODE
LOW	semantica/ingest/looker_ingestor.py	127	__all__ = [	CODE
LOW⚡	semantica/ingest/bigquery_ingestor.py	106	__all__ = [	CODE
LOW	semantica/ingest/airflow_ingestor.py	30	__all__ = [	CODE
LOW	semantica/ingest/servicenow_ingestor.py	48	__all__ = [	CODE
LOW⚡	semantica/ingest/redshift_ingestor.py	131	__all__ = [	CODE
LOW	semantica/ingest/ingest_provenance.py	110	__all__ = ['PDFIngestorWithProvenance', 'IngestProvenanceMixin']	CODE
LOW⚡	semantica/ingest/dynamics365_ingestor.py	96	__all__ = [	CODE
LOW	semantica/parse/__init__.py	237	__all__ = [	CODE
LOW	semantica/parse/parse_provenance.py	74	__all__ = ['ParserWithProvenance']	CODE
LOW	semantica/explorer/session.py	37	logger = logging.getLogger(__name__)	CODE
LOW	semantica/explorer/session.py	200	def set_provenance_storage_path(self, storage_path: Optional[str]) -> None:	CODE
LOW	semantica/explorer/routes/temporal.py	24	logger = logging.getLogger(__name__)	CODE
LOW	semantica/explorer/routes/enrich.py	29	logger = logging.getLogger(__name__)	CODE
LOW	semantica/explorer/routes/graph.py	11	logger = logging.getLogger(__name__)	STRING
LOW	semantica/explorer/routes/export_import.py	18	logger = logging.getLogger(__name__)	CODE
LOW	semantica/explorer/routes/ontology.py	30	logger = logging.getLogger(__name__)	CODE
LOW	semantica/explorer/routes/provenance.py	20	logger = logging.getLogger(__name__)	CODE
LOW	semantica/utils/__init__.py	155	__all__ = [	CODE
LOW	semantica/triplet_store/config.py	170	def _set_defaults(self) -> None:	CODE
LOW	semantica/triplet_store/config.py	235	def set_method_config(self, method_name: str, config: Dict[str, Any]) -> None:	CODE
LOW	semantica/triplet_store/__init__.py	57	__all__ = [	CODE
LOW	semantica/triplet_store/triplet_store_provenance.py	75	__all__ = ['TripletStoreWithProvenance']	CODE
LOW	semantica/graph_store/amazon_neptune.py	1783	def update_auth_context(self, context) -> None:	CODE
LOW	semantica/graph_store/graph_store_provenance.py	72	__all__ = ['GraphStoreWithProvenance']	CODE
LOW	semantica/graph_store/config.py	177	def _set_defaults(self) -> None:	CODE
LOW	semantica/graph_store/config.py	258	def set_method_config(self, method_name: str, config: Dict[str, Any]) -> None:	CODE
LOW	semantica/graph_store/__init__.py	164	__all__ = [	CODE
LOW	semantica/deduplication/deduplication_provenance.py	76	__all__ = ['DeduplicatorWithProvenance']	CODE
44 more matches not shown…

Modern AI Meta-Vocabulary25 hits · 58 pts

Severity	File	Line	Snippet	Context
MEDIUM	CHANGELOG.md	400	- Replaced the retired `claude-sonnet-4-20250514` model id in docs and LLM wrappers (#1449) by @ZohaibHassan16 — upd	CODE
MEDIUM	CHANGELOG.md	543	- `SPARQLReasoner.execute_query()` claimed to run a query but always returned an empty result (#1087, fixes #1083) b	CODE
MEDIUM	README.md	347	\| [Multi-Agent (Agno)](#multi-agent-shared-context-with-agno) \| One shared context graph across every agent on a team \|	CODE
MEDIUM	README.md	1539	pip install "semantica[agno]" # Agno multi-agent integration	STRING
MEDIUM	tests/test_pipeline_orchestration.py	257	# This simulates a complete pipeline orchestration workflow	COMMENT
MEDIUM	tests/context/test_pr1548_review_fixes.py	185	# LLM hallucinates comm_999 alongside comm_1	COMMENT
MEDIUM⚡	tests/context/test_global_retriever.py	518	# Verify to_retrieved_contexts returns empty list to prevent RAG pollution	COMMENT
MEDIUM	semantica_mcp/mcp/session.py	130	# default embedding model (all-MiniLM-L6-v2 = 384, hash fallback	COMMENT
MEDIUM	docs/choose-your-module.md	115	# GraphRAG query with multi-hop reasoning trace	COMMENT
MEDIUM	docs/guides/agent-memory.md	69	# AgentContext orchestrates everything	COMMENT
MEDIUM	semantica/pipeline/pipeline_usage.md	623	### RAG Pipeline Template	COMMENT
MEDIUM	semantica/pipeline/pipeline_usage.md	630	# Create RAG pipeline	COMMENT
MEDIUM	semantica/pipeline/pipeline_usage.md	1121	# Create RAG pipeline from template	COMMENT
MEDIUM	semantica/pipeline/pipeline_templates.py	129	# RAG Pipeline Template	COMMENT
MEDIUM	semantica/context/context_retriever.py	3040	>>> # Combine with TemporalQueryRewriter for end-to-end temporal RAG	STRING
MEDIUM	semantica/context/agent_memory.py	828	# This would use an embedding model	COMMENT
MEDIUM	semantica/context/context_graph.py	2912	# The link marker node is scaffolding reachable only from the node	COMMENT
MEDIUM	semantica/context/agent_context.py	609	# Simple RAG: Use AgentMemory (vector + memory)	COMMENT
MEDIUM	semantica/context/agent_context.py	562	>>> # Auto-detects RAG vs GraphRAG	STRING
MEDIUM	semantica/core/core_usage.md	14	8. [Orchestration Methods](#orchestration-methods)	CODE
MEDIUM	semantica/graph_store/graph_store_usage.md	617	### Knowledge Graph for RAG	STRING
MEDIUM	integrations/crewai/__init__.py	6	the `CrewAI <https://github.com/crewAIInc/crewAI>`_ agentic framework.	STRING
MEDIUM	integrations/agno/__init__.py	6	the `Agno <https://github.com/agno-agi/agno>`_ agentic framework.	STRING
MEDIUM	examples/capability_gap_context_graphs_example.py	261	# Logical orchestration path declared with Semantica PipelineBuilder.	COMMENT
MEDIUM	.github/full-suite-known-failures.txt	101	# because the real embedding model is offline, and two expectation drifts in	COMMENT

AI Slop Vocabulary28 hits · 58 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/test_030_context_graph_realworld_extended.py	272	# A. ContextGraph Advanced Decision Methods (NOT covered in comprehensive file)	COMMENT
MEDIUM	tests/context/test_context_retriever_hybrid.py	160	"""Test getting comprehensive decision context."""	STRING
MEDIUM	tests/context/test_end_to_end_context_integration.py	117	# Test comprehensive retrieval	COMMENT
MEDIUM	tests/context/test_end_to_end_context_integration.py	574	# Test comprehensive context retrieval	COMMENT
LOW	tests/parse/test_parser.py	80	# OR just use a real file or a string that doesn't exist but bypass the check if possible?	COMMENT
LOW	tests/parse/test_parser.py	88	# OR just pass a string and let it be treated as content if file missing.	COMMENT
LOW	tests/triplet_store/test_oxigraph_store.py	241	# on-disk path, not just set the attribute)	COMMENT
LOW⚡	tests/semantic_extract/test_robustness_fallback.py	79	ner = NERExtractor() # We'll just pass entities directly	CODE
LOW⚡	tests/ontology/test_ontology_advanced.py	62	# Given it's a manager, it might just return a structure.	COMMENT
MEDIUM	tests/vector_store/test_end_to_end_decision_tracking.py	260	# Test comprehensive explanation	COMMENT
MEDIUM	tests/vector_store/test_performance_benchmarks.py	450	"""Run comprehensive performance benchmark."""	STRING
MEDIUM⚡	tests/normalize/test_integration.py	58	# Note: clean_data default duplicate_criteria key_fields might need setting if we want robust test	COMMENT
MEDIUM⚡	tests/kg/test_registry.py	401	# Register with comprehensive metadata	COMMENT
MEDIUM	tests/kg/test_provenance_workflows_simple.py	321	"""Test comprehensive workflow with all available methods."""	STRING
MEDIUM	tests/kg/test_provenance_workflows.py	531	"""Test comprehensive provenance workflow combining all algorithms."""	STRING
MEDIUM⚡	tests/kg/test_enhanced_algorithms_e2e.py	476	"""Test comprehensive workflow combining all algorithms."""	STRING
MEDIUM⚡	tests/kg/test_community_summarizer.py	983	"""Tests for edge cases, sanitization, deep copy, and robust fallbacks."""	STRING
MEDIUM	tests/kg/test_kg.py	214	"""Test comprehensive analysis"""	STRING
LOW	semantica/seed/seed_manager.py	1012	# For now, just return the foundation	COMMENT
MEDIUM	semantica/context/context_retriever.py	811	# Generate comprehensive content from entity and relationships	COMMENT
MEDIUM	semantica/context/context_graph.py	4140	# Enhanced methods for comprehensive context graphs	COMMENT
MEDIUM⚡	semantica/context/decision_query.py	1167	# Advanced methods for comprehensive context graphs	STRING
MEDIUM	semantica/context/agent_context.py	2289	# Enhanced methods for comprehensive context graphs	STRING
LOW	semantica/core/methods.py	254	# Minimal initialization - just create instance, don't initialize	COMMENT
LOW	semantica/graph_store/amazon_neptune.py	121	# Use AuthManager base class if available, otherwise just use object	COMMENT
MEDIUM	semantica/semantic_extract/methods.py	2224	# Convert back to internal Relation format (robust across providers)	COMMENT
MEDIUM	semantica/benchmarks/datasets/locomo.py	107	# enter the gold list, or the harness would credit a system for	COMMENT
MEDIUM	semantica/kg/graph_analyzer.py	157	# Compile comprehensive results	COMMENT

Magic Placeholder Names7 hits · 30 pts

Severity	File	Line	Snippet	Context
HIGH	docs/reference/llms.md	228	llm = Groq(api_key="your-api-key-here", model="llama-3.1-8b-instant")	CODE
HIGH	semantica/seed/seed_usage.md	129	api_key="your-api-key",	CODE
HIGH	semantica/seed/seed_manager.py	492	... api_key="your-api-key",	STRING
HIGH	semantica/embeddings/embeddings_usage.md	328	api_key="your-api-key",	CODE
HIGH	semantica/embeddings/embeddings_usage.md	379	api_key="your-api-key"	CODE
HIGH	semantica/vector_store/vector_store_usage.md	828	store = PineconeStore(api_key="your-api-key")	CODE
HIGH	semantica/vector_store/pinecone_store.py	25	>>> store = PineconeStore(api_key="your-api-key")	STRING

AI Structural Patterns39 hits · 28 pts

Severity	File	Line	Context
LOW	semantica/context/global_retriever.py	338	CODE
LOW	semantica/context/decision_methods.py	218	CODE
LOW	semantica/context/drift_search.py	400	CODE
LOW	semantica/context/context_graph.py	3800	CODE
LOW	semantica/context/agent_context.py	125	CODE
LOW	semantica/context/agent_context.py	397	CODE
LOW	semantica/context/agent_context.py	518	CODE
LOW	semantica/ingest/sap_ingestor.py	152	CODE
LOW	semantica/ingest/sap_ingestor.py	433	CODE
LOW	semantica/ingest/databricks_ingestor.py	334	CODE
LOW	semantica/ingest/snowflake_ingestor.py	100	CODE
LOW	semantica/ingest/snowflake_ingestor.py	361	CODE
LOW	semantica/ingest/tableau_ingestor.py	321	CODE
LOW	semantica/ingest/powerbi_ingestor.py	166	CODE
LOW	semantica/ingest/powerbi_ingestor.py	535	CODE
LOW	semantica/ingest/web_ingestor.py	503	CODE
LOW	semantica/ingest/public_api_ingestor.py	419	CODE
LOW	semantica/ingest/looker_ingestor.py	1180	CODE
LOW	semantica/ingest/servicenow_ingestor.py	354	CODE
LOW	semantica/ingest/redshift_ingestor.py	242	CODE
LOW	semantica/ingest/redshift_ingestor.py	634	CODE
LOW	semantica/ingest/salesforce_ingestor.py	373	CODE
LOW	semantica/ingest/salesforce_ingestor.py	764	CODE
LOW	semantica/graph_store/amazon_neptune.py	514	CODE
LOW	semantica/deduplication/duplicate_detector.py	97	CODE
LOW	semantica/semantic_extract/methods.py	2674	CODE
LOW	semantica/ontology/engine.py	200	CODE
LOW	semantica/ontology/ontology_generator.py	837	CODE
LOW	semantica/vector_store/decision_embedding_pipeline.py	80	CODE
LOW	semantica/vector_store/decision_vector_methods.py	98	CODE
LOW	semantica/vector_store/decision_vector_methods.py	248	CODE
LOW	semantica/kg/community_summarizer.py	559	CODE
LOW	semantica/kg/community_summarizer.py	692	CODE
LOW	semantica/kg/node_embeddings.py	94	CODE
LOW	semantica/kg/link_predictor.py	110	CODE
LOW	semantica/kg/graph_builder.py	57	CODE
LOW	semantica/kg/community_hierarchy.py	569	CODE
LOW	integrations/crewai/decision_tool.py	237	CODE
LOW	integrations/agno/knowledge_graph.py	120	CODE

Overly Generic Function Names5 hits · 3 pts

Severity	File	Line	Snippet	Context
LOW	tests/core/test_core.py	132	def my_method(): return "ok"	CODE
LOW	tests/ingest/test_notebook_02.py	147	tmp.write("class MyClass:\n def my_method(self):\n pass")	CODE
LOW	semantica/utils/logging.py	39	... def my_function():	STRING
LOW	semantica/utils/logging.py	357	def my_function():	STRING
LOW	semantica/utils/progress_tracker.py	1638	def my_function():	STRING

Dead Code2 hits · 2 pts

Severity	File	Line	Snippet	Context
MEDIUM	tests/test_cli_commands.py	2878		CODE
MEDIUM	tests/vector_store/test_vector_manager_persistent.py	282		CODE

Maintenance and Governance Review

Risk Review · v3

What These Metrics Mean

Pattern-Signal History

Severity Breakdown

Directory Score Breakdown

Pattern Findings