safishamsi/graphify

36.1

Adjusted Score

36.1

Raw Score

100%

Time Factor

2026-08-28

Last Push

111.9K

Stars

Python

Language

227.0K

Lines of Code

711

Files

6.7K

Pattern Hits

2026-08-29

Scan Date

0.14

HC Hit Rate

What These Metrics Mean

Adjusted Score: Primary synthetic code indicator. Raw score normalised per 1,000 lines of code and multiplied by the temporal discount factor. This is the definitive comparative metric — use it to rank repositories by AI authorship density.
Raw Score: The unmodified sum of all severity-weighted, context-multiplied pattern match scores before temporal discounting. Reflects the absolute signal strength independent of when the repository was last active.
Time Factor: The temporal discount multiplier (0–100%) applied to the raw score. Repositories last updated before ChatGPT's launch (Nov 2022) receive a 5% factor. Full signal is only assigned to repositories active in the post-adoption era (Jan 2024+).
Pattern Hits: Total count of individual pattern matches across all files and categories. A high hit count with a low score may indicate a very large codebase with isolated AI snippets; a low count with a high score indicates dense, concentrated AI signatures.
HC Hit Rate: High+Critical pattern hits per file, averaged across the repository. This orthogonal signal catches repositories where a few files are densely packed with high-severity AI tells — a strong indicator even when the normalised score appears moderate due to codebase size.
Lines of Code / Files: Total lines and files analysed. The scanner examines 94 file extensions. These denominators are used to normalise the score, enabling fair comparison between repositories of vastly different sizes.

Score History

This chart maps the temporal evolution of the adjusted synthetic code score across successive scan runs. An upward trajectory indicates ongoing incorporation of AI-generated code or expanding LLM-assisted scaffolding; a stable or declining trajectory may reflect active human refactoring, code removal, or the adoption of stricter authorship policies. The dashed secondary line (right axis) independently tracks total raw pattern hit count, which can diverge from the normalised score when codebase size changes significantly between scans.

Severity Breakdown

Classifies detected patterns by their diagnostic confidence and structural impact. CRITICAL patterns (coefficient 10) represent definitive synthetic signatures — hallucinated imports, explicit LLM attribution metadata — virtually never produced by human authors. HIGH (5) indicates strong structural tells such as cross-file repetition or cross-linguistic idioms. MEDIUM (2) covers recognisable conversational padding and AI-specific vocabulary. LOW (1) captures subtle indicators like tautological comments and generic boilerplate that require density to carry independent signal.

CRITICAL 0HIGH 101MEDIUM 566LOW 6029

Directory Score Breakdown

This horizontal bar chart decomposes the repository's raw synthetic code score by top-level directory, allowing you to pinpoint precisely which modules or components carry the highest AI authorship density. Directories with disproportionately high scores relative to their size warrant targeted manual review: concentrated AI signatures often trace back to mass-generated configuration layers, auto-ported test suites, LLM-scaffolded boilerplate classes, or entire subsystems authored under heavy copilot assistance. Use this view to prioritise your human code-review effort.

Pattern Findings

The scanner identified 6696 distinct pattern matches across 16 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a statistically significant AI authorship indicator. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.

Reading the findings table: The Severity column indicates the diagnostic confidence level (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — comment-context matches receive a ×1.5 weight because LLMs systematically over-annotate. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier as dense clusters constitute far stronger evidence of synthetic authorship than isolated hits.

Hyper-Verbose Identifiers4278 hits · 3797 pts

Severity	File	Line	Snippet	Context
LOW	tools/skillgen/gen.py	893	def _is_frontmatter_description_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	947	def _is_content_scope_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	962	def _is_cache_unlink_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	976	def _is_zero_node_guard_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1002	def _is_manifest_root_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1017	def _is_manifest_stamp_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1045	def _is_sensitive_reporting_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1066	def _is_shebang_allowlist_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1079	def _is_obsidian_usage_comment_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1090	def _is_uv_from_interpreter_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1104	def _is_semantic_cache_scope_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1120	def _is_community_label_export_fix_line(line: str) -> bool:	CODE
LOW	tools/skillgen/gen.py	1169	def _is_sanctioned_monolith_diff(line: str) -> bool:	CODE
LOW	worked/mixed-corpus/raw/analyze.py	239	def _cross_community_surprises(	CODE
LOW	worked/httpx/raw/utils.py	55	def obfuscate_sensitive_headers(headers: dict) -> dict:	CODE
LOW	tests/test_extract_cli.py	22	def test_extract_exits_nonzero_when_ast_extraction_raises(	CODE
LOW	tests/test_extract_cli.py	59	def test_extract_allow_partial_continues_past_ast_failure(	CODE
LOW	tests/test_extract_cli.py	112	def test_extract_exits_nonzero_when_all_semantic_chunks_fail(	CODE
LOW	tests/test_extract_cli.py	173	def test_extract_succeeds_when_at_least_one_chunk_completes(	CODE
LOW	tests/test_extract_cli.py	230	def test_incremental_partial_run_preserves_untouched_semantic_hash(	CODE
LOW	tests/test_extract_cli.py	305	def test_truncated_doc_semantic_hash_is_cleared_for_requeue(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	356	def test_manifest_stamps_freshly_extracted_semantic_docs(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	416	def test_stamped_manifest_files_normalizes_both_sides(tmp_path):	CODE
LOW	tests/test_extract_cli.py	450	def test_stamped_manifest_files_counts_hyperedge_only_docs(tmp_path):	CODE
LOW	tests/test_extract_cli.py	478	def test_manifest_stamps_hyperedge_only_docs(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	546	def test_extract_mode_deep_dispatches_over_warm_cache(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	593	def test_extract_force_flag_redispatches_and_stamps_manifest(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	633	def test_extract_graphify_force_env_redispatches(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	656	def test_cache_check_mode_deep_reads_deep_namespace(monkeypatch, tmp_path, capsys):	CODE
LOW	tests/test_extract_cli.py	700	def test_extract_codeonly_succeeds_without_api_key(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	727	def test_missing_manifest_code_only_preserves_semantic_layer(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	794	def test_extract_out_keeps_project_root_clean(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	831	def test_extract_without_key_still_errors_when_docs_present(	CODE
LOW	tests/test_extract_cli.py	859	def test_extract_timing_flag_emits_stage_timings(monkeypatch, tmp_path, capsys):	CODE
LOW	tests/test_extract_cli.py	894	def test_pathless_postgres_extract_initializes_empty_detection(	CODE
LOW	tests/test_extract_cli.py	1034	def test_incremental_extract_prunes_newly_excluded_file_not_in_manifest(	CODE
LOW	tests/test_extract_cli.py	1083	def test_incremental_extract_prunes_excluded_file_listed_in_manifest(	CODE
LOW	tests/test_extract_cli.py	1127	def test_no_cluster_incremental_prunes_newly_excluded_file(	CODE
LOW	tests/test_extract_cli.py	1208	def test_failed_extra_is_retried_and_recovers(monkeypatch, tmp_path, capsys):	CODE
LOW	tests/test_extract_cli.py	1257	def test_permanent_failure_does_not_wedge(monkeypatch, tmp_path, capsys):	CODE
LOW	tests/test_extract_cli.py	1290	def test_success_and_unchanged_unaffected(monkeypatch, tmp_path, capsys):	CODE
LOW	tests/test_extract_cli.py	1310	def test_poisoned_manifest_is_healed(monkeypatch, tmp_path, capsys):	CODE
LOW	tests/test_extract_cli.py	1354	def test_cache_check_prompt_file_scopes_hits_to_that_prompt(monkeypatch, tmp_path, capsys):	CODE
LOW	tests/test_extract_cli.py	1383	def test_edge_only_semantic_extraction_not_stamped_and_retried(monkeypatch, tmp_path):	CODE
LOW	tests/test_extract_cli.py	1482	def test_stale_poisoned_manifest_semantic_source_healed(monkeypatch, tmp_path, capsys):	CODE
LOW	tests/test_extract_cli.py	1573	def test_incremental_stray_attribution_preserves_undispatched_file(	CODE
LOW	tests/test_pdf_slicing.py	78	def test_the_fixture_is_the_shape_the_bug_needs(big_pdf):	CODE
LOW⚡	tests/test_pdf_slicing.py	92	def test_an_oversized_pdf_is_sliced(big_pdf):	CODE
LOW⚡	tests/test_pdf_slicing.py	99	def test_the_slices_tile_the_extracted_text_exactly(big_pdf):	CODE
LOW⚡	tests/test_pdf_slicing.py	106	def test_no_slice_exceeds_the_cap(big_pdf):	CODE
LOW⚡	tests/test_pdf_slicing.py	112	def test_a_slice_indexes_text_not_bytes(big_pdf):	CODE
LOW	tests/test_pdf_slicing.py	123	def test_the_tail_reaches_the_prompt(big_pdf):	CODE
LOW⚡	tests/test_pdf_slicing.py	138	def test_a_small_pdf_still_passes_through_whole(tmp_path):	CODE
LOW⚡	tests/test_pdf_slicing.py	146	def test_plain_text_slicing_is_unchanged(tmp_path):	CODE
LOW⚡	tests/test_pdf_slicing.py	155	def test_images_and_code_are_still_not_sliced(tmp_path):	CODE
LOW⚡	tests/test_pdf_slicing.py	165	def test_a_corrupt_pdf_does_not_break_the_pass(tmp_path):	CODE
LOW⚡	tests/test_pdf_slicing.py	171	def test_a_rewritten_pdf_is_re_read(tmp_path):	CODE
LOW	tests/test_pdf_slicing.py	184	def test_repeated_reads_agree(big_pdf):	CODE
LOW	tests/test_pdf_slicing.py	189	def test_bisect_slice_of_a_pdf_indexes_extracted_text_not_bytes(big_pdf):	CODE
LOW	tests/test_csharp_partial_classes.py	63	def test_partial_halves_merge_to_one_class_node(tmp_path):	CODE
4218 more matches not shown…

Decorative Section Separators543 hits · 2036 pts

Severity	File	Line	Snippet	Context
MEDIUM	tests/test_extract_cli.py	999	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_extract_cli.py	1004	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_extract_cli.py	1166	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_extract_cli.py	1172	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_extract_cli.py	1555	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_extract_cli.py	1562	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_pdf_slicing.py	134	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_pdf_slicing.py	136	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	9	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	11	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	64	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	66	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	81	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	83	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	92	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	95	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	125	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_semantic_similarity.py	127	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tree_html.py	51	# ── build_tree unit tests ─────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_tree_html.py	83	# ── CLI integration ───────────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	43	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	45	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	69	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	71	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	180	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	182	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	233	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	235	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	273	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_codebuddy.py	275	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_codebuddy.py	10	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	tests/test_codebuddy.py	12	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_pascal.py	145	# ── Lazarus Form (.lfm) ───────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_pascal.py	199	# ── Lazarus Package (.lpk) ───────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_pascal.py	245	# ── Delphi Form (.dfm) ───────────────────────────────────────────────────────	COMMENT
MEDIUM	tests/test_build_merge_hyperedges_and_prune.py	36	# ── #1574: hyperedge preservation ─────────────────────────────────────────────	COMMENT
MEDIUM	tests/test_build_merge_hyperedges_and_prune.py	97	# ── #1571: root-less prune (absolute deleted paths vs relative node keys) ──────	COMMENT
MEDIUM⚡	tests/test_dedup.py	14	# ── entropy gate ─────────────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_dedup.py	26	# ── shingles ─────────────────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_dedup.py	39	# ── full pipeline ─────────────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_dedup.py	130	# ── build integration ─────────────────────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_dedup.py	983	# ── #2576: same-file labels differing by a content-word swap ──────────────────	COMMENT
MEDIUM	tests/test_dedup.py	304	# ── #1284: numbered siblings + cross-file file-anchored boilerplate ──────────	COMMENT
MEDIUM	tests/test_dedup.py	372	# ── #1243: JaroWinkler prefix-bonus over-merge (cross-file) ──────────────────	COMMENT
MEDIUM	tests/test_dedup.py	400	# ── #1504: cross-chunk node ID collision warning ──────────────────────────────	COMMENT
MEDIUM	tests/test_dedup.py	440	# ── #1857: dedup summary log breakdown ────────────────────────────────────────	COMMENT
MEDIUM	tests/test_dedup.py	476	# ── ID collisions: definition vs cross-reference ──────────────────────────────	COMMENT
MEDIUM	tests/test_dedup.py	638	# ── #2532: lifecycle-aware, environment-stable collision ranking ──────────────	COMMENT
MEDIUM	tests/test_dedup.py	740	# ── #2091 review: attribute-merge correctness (fixes A-D) ─────────────────────	COMMENT
MEDIUM	tests/test_dedup.py	806	# ── #2182: cross-file exact-duplicate concepts must merge ─────────────────────	COMMENT
MEDIUM⚡	tests/test_symbol_resolution.py	331	# ═══════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_symbol_resolution.py	332	# ── Bash source edges resolver tests ──────────────────────────────────────────	COMMENT
MEDIUM⚡	tests/test_symbol_resolution.py	333	# ═══════════════════════════════════════════════════════════════════════════════	COMMENT
MEDIUM⚡	tests/test_symbol_resolution.py	632	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_symbol_resolution.py	634	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_security.py	31	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_security.py	33	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_security.py	58	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_security.py	60	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_security.py	145	# ---------------------------------------------------------------------------	COMMENT
483 more matches not shown…

Cross-Language Confusion101 hits · 646 pts

Severity	File	Line	Snippet	Context
HIGH⚡	tests/test_ts_parse_warning.py	50	"declare const Comp: (props: { to: string }) => null;\n"	CODE
HIGH⚡	tests/test_indirect_call_function_expression_shadow.py	139	"function wrap(a, b){ return a \|\| b; }\n"	CODE
HIGH⚡	tests/test_indirect_call_for_of_binding_shadow.py	58	" if (lookup(entry.name)) resolved.push({ entry });\n"	CODE
HIGH⚡	tests/test_indirect_call_for_of_binding_shadow.py	76	" out.push({ entry });\n"	CODE
HIGH⚡	tests/test_indirect_call_for_of_binding_shadow.py	92	" for (const entry of rows) { out.push({ entry }); }\n"	CODE
HIGH	tests/test_js_exported_scalar_bindings.py	73	export const A_MAX = Number(process.env.A_MAX \|\| 10);	STRING
HIGH⚡	tests/test_indirect_call_catch_binding_shadow.py	70	" try { boom(); } catch ({ cause }) { sink.push(cause); }\n"	CODE
HIGH	tests/test_java_type_resolution.py	91	" public boolean validateCurrency(String c) { return c.length() == 3; }\n"	CODE
HIGH	tests/test_java_type_resolution.py	217	" public Map<String, Object> lookup(Long id) { return null; }\n"	CODE
HIGH	tests/test_java_type_resolution.py	218	" public java.util.Optional<Boolean> flag() { return null; }\n"	CODE
HIGH⚡	tests/test_java_type_resolution.py	246	" public OrderDto first() { return null; }\n"	CODE
HIGH	tests/test_languages.py	507	" return null;\n"	STRING
HIGH	tests/test_dart.py	483	context.router.push(ProfileRoute());	CODE
HIGH⚡	tests/test_hook_guard.py	80	"cd findings && ls", # 'find' without a trailing space is not a match	CODE
HIGH	tests/test_indirect_call_external_import_shadow.py	58	"Palette.tsx": "export function Palette() { return null; }\n",	CODE
HIGH⚡	tests/test_indirect_call_external_import_shadow.py	72	"Chart.tsx": "export function Chart() { return null; }\n",	CODE
HIGH⚡	tests/test_indirect_call_external_import_shadow.py	87	"export function run(sink) { sink.push(Utils); }\n"	CODE
HIGH⚡	tests/test_indirect_call_external_import_shadow.py	102	"export function app(sink) { sink.push(Find); }\n"	CODE
HIGH⚡	tests/test_indirect_call_external_import_shadow.py	120	"Palette.tsx": "export function Palette() { return null; }\n",	CODE
HIGH⚡	tests/test_indirect_call_external_import_shadow.py	135	"widgets.ts": "export function Widget() { return null; }\n",	CODE
HIGH⚡	tests/test_indirect_call_external_import_shadow.py	138	"export function host(sink) { sink.push(Widget); }\n"	CODE
HIGH⚡	tests/test_indirect_call_external_import_shadow.py	163	"table.ts": "export function Filter() { return null; }\n", # unrelated corpus callable	CODE
HIGH⚡	tests/test_indirect_call_external_import_shadow.py	168	" sink.push(Filter);\n" # external -> must NOT bind to table.ts Filter	CODE
HIGH	tests/test_build.py	1253	the source_location shape (AST emits 'L<line>', semantic emits null)."""	STRING
HIGH⚡	tests/test_hooks.py	795	assert 'cd "$(git rev-parse --git-dir 2>/dev/null)" 2>/dev/null && pwd' in script	CODE
HIGH⚡	tests/test_hooks.py	795	assert 'cd "$(git rev-parse --git-dir 2>/dev/null)" 2>/dev/null && pwd' in script	CODE
HIGH⚡	tests/test_js_callback_calls.py	106	"function wrapper(a: unknown, b: unknown) { return a \|\| b; }\n"	CODE
HIGH⚡	tests/test_js_callback_calls.py	122	"function wrapper(a: unknown, b: unknown) { return a \|\| b; }\n"	CODE
HIGH⚡	tests/test_js_callback_calls.py	138	"function wrapper(a: unknown, b: unknown) { return a \|\| b; }\n"	CODE
HIGH⚡	tests/test_js_callback_calls.py	141	" (alpha) => { q.push(alpha); },\n"	CODE
HIGH⚡	tests/test_js_callback_calls.py	156	"function wrapper(a: unknown, b: unknown) { return a \|\| b; }\n"	CODE
HIGH⚡	tests/test_js_callback_calls.py	172	"function wrapper(a: unknown, b: unknown) { return a \|\| b; }\n"	CODE
HIGH⚡	tests/test_java_member_calls.py	146	" { AuditLog service = null; service.charge(); }\n"	CODE
HIGH⚡	tests/test_java_member_calls.py	149	" new Object() { void nested() { AuditLog service = null; } };\n"	CODE
HIGH⚡	tests/test_java_member_calls.py	213	" void run(int value) { PaymentGateway service = null; service.charge(); }\n"	CODE
HIGH⚡	tests/test_java_member_calls.py	214	" void run(String value) { AuditLog service = null; service.charge(); }\n"	CODE
HIGH	tests/test_incremental.py	116	"export function ScanScreen() {\n return null;\n}\n", encoding="utf-8"	CODE
HIGH	tests/test_cross_language_call_resolution.py	48	" return null;\n"	CODE
HIGH⚡	tests/test_extract.py	1078	" render() { return null; }\n"	CODE
HIGH⚡	tests/test_extract.py	2637	"orlist() { helper \|\| return 1; }\n"	CODE
HIGH⚡	tests/test_extract.py	2638	"andlist() { true && helper; }\n"	CODE
HIGH⚡	tests/test_extract.py	2642	"redir() { helper >/dev/null; }\n"	CODE
HIGH	tests/test_export.py	1043	return s(a,b,c)s(a,b,d) < 0 && s(c,d,a)s(c,d,b) < 0;	CODE
HIGH	tests/test_export.py	1076	if (!Array.isArray(h) \|\| h.length < 1 \|\| selfIntersects(h)) bad++;	CODE
HIGH⚡	tests/test_skillgen.py	457	assert gen._rm_to_remove_item("rm -f graphify-out/.needs_update 2>/dev/null \|\| true") == (	CODE
HIGH⚡	graphify/hooks.py	46	if [ -n "$_FROM_FILE" ] && [ -x "$_FROM_FILE" ] && "$_FROM_FILE" -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH⚡	graphify/hooks.py	53	GRAPHIFY_BIN=$(command -v graphify 2>/dev/null)	CODE
HIGH⚡	graphify/hooks.py	60	if [ -x "$_GFY_BINDIR/../python.exe" ] && "$_GFY_BINDIR/../python.exe" -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH⚡	graphify/hooks.py	62	elif [ -x "$_GFY_BINDIR/python.exe" ] && "$_GFY_BINDIR/python.exe" -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH⚡	graphify/hooks.py	112	if "$_GFY_CAND" -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH⚡	graphify/hooks.py	121	if command -v python3 >/dev/null 2>&1 && python3 -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH⚡	graphify/hooks.py	121	if command -v python3 >/dev/null 2>&1 && python3 -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH⚡	graphify/hooks.py	123	elif command -v python >/dev/null 2>&1 && python -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH⚡	graphify/hooks.py	123	elif command -v python >/dev/null 2>&1 && python -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH	graphify/hooks.py	34	if [ -n "$_PINNED" ] && [ -x "$_PINNED" ] && "$_PINNED" -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH	graphify/hooks.py	91	if [ -n "$GRAPHIFY_PYTHON" ] && ! "$GRAPHIFY_PYTHON" -c "$_GFY_PROBE" 2>/dev/null; then	CODE
HIGH⚡	graphify/hooks.py	299	_GFY_GITDIR=$(cd "$(git rev-parse --git-dir 2>/dev/null)" 2>/dev/null && pwd)	STRING
HIGH⚡	graphify/hooks.py	299	_GFY_GITDIR=$(cd "$(git rev-parse --git-dir 2>/dev/null)" 2>/dev/null && pwd)	STRING
HIGH⚡	graphify/hooks.py	300	_GFY_COMMONDIR=$(cd "$(git rev-parse --git-common-dir 2>/dev/null)" 2>/dev/null && pwd)	STRING
HIGH⚡	graphify/hooks.py	300	_GFY_COMMONDIR=$(cd "$(git rev-parse --git-common-dir 2>/dev/null)" 2>/dev/null && pwd)	STRING
41 more matches not shown…

Structural Annotation Overuse407 hits · 616 pts

Severity	File	Line	Snippet	Context
LOW⚡	tools/skillgen/gen.py	241	"### Step 4 - Build the graph and generate outputs",	CODE
LOW⚡	tools/skillgen/gen.py	242	"### Step 5 - Save manifest, clean up, and report",	CODE
LOW⚡	tools/skillgen/gen.py	252	"### Step 4 - Build graph and cluster",	CODE
LOW⚡	tools/skillgen/gen.py	253	"### Step 5 - Generate report and visualization",	CODE
LOW	tools/skillgen/fragments/core/devin.md	70	### Step 1 - Ensure graphify is installed	COMMENT
LOW	tools/skillgen/fragments/core/devin.md	112	### Step 2 - Detect files	COMMENT
LOW	tools/skillgen/fragments/core/devin.md	187	### Step 3 - Extract entities and relationships	COMMENT
LOW	tools/skillgen/fragments/core/devin.md	453	### Step 4 - Build graph, cluster, analyze, generate outputs	COMMENT
LOW	tools/skillgen/fragments/core/devin.md	513	### Step 5 - Label communities	COMMENT
LOW	tools/skillgen/fragments/core/devin.md	560	### Step 6 - Generate Obsidian vault (opt-in) + HTML	COMMENT
LOW	tools/skillgen/fragments/core/devin.md	674	### Step 7 - Neo4j export (only if --neo4j or --neo4j-push flag)	COMMENT
LOW	tools/skillgen/fragments/core/devin.md	774	### Step 8 - Token reduction benchmark (only if total_words > 5000)	COMMENT
LOW	tools/skillgen/fragments/core/devin.md	794	### Step 9 - Save manifest, update cost tracker, clean up, and report	COMMENT
LOW⚡	tools/skillgen/fragments/core/core.md	58	### Step 0 - GitHub repos and multi-path merge (only if a URL or several paths)	COMMENT
LOW⚡	tools/skillgen/fragments/core/core.md	62	### Step 1 - Ensure graphify is installed	COMMENT
LOW⚡	tools/skillgen/fragments/core/core.md	66	### Step 2 - Detect files	COMMENT
LOW	tools/skillgen/fragments/core/core.md	110	### Step 3 - Extract entities and relationships	COMMENT
LOW	tools/skillgen/fragments/core/core.md	328	### Step 4 - Build graph, cluster, analyze, generate outputs	COMMENT
LOW	tools/skillgen/fragments/core/core.md	417	### Step 5 - Label communities	COMMENT
LOW	tools/skillgen/fragments/core/core.md	466	### Step 6 - Generate Obsidian vault (opt-in) + HTML	COMMENT
LOW	tools/skillgen/fragments/core/core.md	492	### Step 9 - Save manifest, update cost tracker, clean up, and report	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	59	### Step 1 - Ensure graphify is installed	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	99	### Step 2 - Detect files	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	174	### Step 3 - Extract entities and relationships	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	388	### Step 4 - Build graph, cluster, analyze, generate outputs	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	448	### Step 5 - Label communities	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	495	### Step 6 - Generate Obsidian vault (opt-in) + HTML	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	555	### Step 7 - Neo4j export (only if --neo4j or --neo4j-push flag)	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	656	### Step 8 - Token reduction benchmark (only if total_words > 5000)	COMMENT
LOW	tools/skillgen/fragments/core/aider.md	676	### Step 9 - Save manifest, update cost tracker, clean up, and report	COMMENT
LOW	…illgen/fragments/references/shared/github-and-merge.md	5	### Step 0 - Clone GitHub repo(s) (only if a GitHub URL was given)	COMMENT
LOW	tools/skillgen/fragments/references/shared/exports.md	15	### Step 7 - Neo4j export (only if --neo4j or --neo4j-push flag)	COMMENT
LOW	tools/skillgen/fragments/references/shared/exports.md	79	### Step 8 - Token reduction benchmark (only if total_words > 5000)	COMMENT
LOW	…pected/graphify__skills__codex__references__exports.md	15	### Step 7 - Neo4j export (only if --neo4j or --neo4j-push flag)	COMMENT
LOW	…pected/graphify__skills__codex__references__exports.md	79	### Step 8 - Token reduction benchmark (only if total_words > 5000)	COMMENT
LOW	…raphify__skills__kilo__references__github-and-merge.md	5	### Step 0 - Clone GitHub repo(s) (only if a GitHub URL was given)	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	61	### Step 0 - GitHub repos and multi-path merge (only if a URL or several paths)	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	65	### Step 1 - Ensure graphify is installed	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	107	### Step 2 - Detect files	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	151	### Step 3 - Extract entities and relationships	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	391	### Step 4 - Build graph, cluster, analyze, generate outputs	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	480	### Step 5 - Label communities	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	529	### Step 6 - Generate Obsidian vault (opt-in) + HTML	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	555	### Step 9 - Save manifest, update cost tracker, clean up, and report	COMMENT
LOW	…ify__skills__opencode__references__github-and-merge.md	5	### Step 0 - Clone GitHub repo(s) (only if a GitHub URL was given)	COMMENT
LOW	…hify__skills__windows__references__github-and-merge.md	5	### Step 0 - Clone GitHub repo(s) (only if a GitHub URL was given)	COMMENT
LOW	…cted/graphify__skills__windows__references__exports.md	15	### Step 7 - Neo4j export (only if --neo4j or --neo4j-push flag)	COMMENT
LOW	…cted/graphify__skills__windows__references__exports.md	79	### Step 8 - Token reduction benchmark (only if total_words > 5000)	COMMENT
LOW	…cted/graphify__skills__copilot__references__exports.md	15	### Step 7 - Neo4j export (only if --neo4j or --neo4j-push flag)	COMMENT
LOW	…cted/graphify__skills__copilot__references__exports.md	79	### Step 8 - Token reduction benchmark (only if total_words > 5000)	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	61	### Step 0 - GitHub repos and multi-path merge (only if a URL or several paths)	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	65	### Step 1 - Ensure graphify is installed	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	134	### Step 2 - Detect files	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	178	### Step 3 - Extract entities and relationships	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	420	### Step 4 - Build graph, cluster, analyze, generate outputs	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	509	### Step 5 - Label communities	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	558	### Step 6 - Generate Obsidian vault (opt-in) + HTML	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	584	### Step 9 - Save manifest, update cost tracker, clean up, and report	COMMENT
LOW	…hify__skills__copilot__references__github-and-merge.md	5	### Step 0 - Clone GitHub repo(s) (only if a GitHub URL was given)	COMMENT
LOW	…ted/graphify__skills__opencode__references__exports.md	15	### Step 7 - Neo4j export (only if --neo4j or --neo4j-push flag)	COMMENT
347 more matches not shown…

Unused Imports589 hits · 430 pts

Severity	File	Line	Context
LOW	tools/skillgen/gen.py	24	CODE
LOW	tools/skillgen/gen.py	35	CODE
LOW	tools/skillgen/__main__.py	2	CODE
LOW	worked/mixed-corpus/raw/build.py	2	CODE
LOW	worked/mixed-corpus/raw/cluster.py	2	CODE
LOW	worked/mixed-corpus/raw/analyze.py	2	CODE
LOW	worked/example/raw/api.py	5	CODE
LOW	worked/example/raw/api.py	7	CODE
LOW	worked/httpx/raw/client.py	7	CODE
LOW	worked/httpx/raw/client.py	7	CODE
LOW	worked/httpx/raw/client.py	9	CODE
LOW	worked/httpx/raw/client.py	9	CODE
LOW	worked/httpx/raw/client.py	10	CODE
LOW	worked/httpx/raw/utils.py	5	CODE
LOW	tests/test_extract_cli.py	2	CODE
LOW	tests/test_extract_cli.py	1388	CODE
LOW	tests/test_csharp_partial_classes.py	13	CODE
LOW	tests/test_csharp_enum_members.py	10	CODE
LOW	tests/test_semantic_similarity.py	5	CODE
LOW	tests/test_word_count_cache.py	5	CODE
LOW	tests/test_multigraph_diagnostics.py	1	CODE
LOW	tests/test_tree_html.py	9	CODE
LOW	tests/test_hook_strict.py	15	CODE
LOW	tests/test_community_labels_skill.py	15	CODE
LOW	tests/test_codebuddy.py	7	CODE
LOW	tests/test_pascal.py	2	CODE
LOW	tests/test_build_merge_hyperedges_and_prune.py	13	CODE
LOW	tests/test_dedup.py	2	CODE
LOW	tests/test_dedup.py	217	CODE
LOW	tests/test_symbol_resolution.py	3	CODE
LOW	tests/test_csharp_call_site_generic_args.py	16	CODE
LOW	tests/test_swift_import_resolution.py	1	CODE
LOW	tests/test_js_dynamic_import_affected.py	17	CODE
LOW	tests/bench_query_scoring.py	29	CODE
LOW	tests/test_security.py	2	CODE
LOW	tests/test_security.py	4	CODE
LOW	tests/test_security.py	12	CODE
LOW	tests/test_security.py	12	CODE
LOW	tests/test_vue_extraction.py	7	CODE
LOW	tests/conftest.py	1	CODE
LOW	tests/test_scala_self_type.py	13	CODE
LOW	tests/test_query_cli.py	2	CODE
LOW	tests/test_semantic_id_remap_root.py	10	CODE
LOW	tests/test_path_cli.py	3	CODE
LOW	tests/test_path_cli.py	8	CODE
LOW	tests/test_path_cli.py	10	CODE
LOW	tests/test_querylog.py	3	CODE
LOW	tests/test_hyperedge_member_shapes.py	11	CODE
LOW	tests/test_zero_node_no_cache.py	9	CODE
LOW	tests/test_zero_node_no_cache.py	11	CODE
LOW	tests/test_incomplete_build_guard.py	10	CODE
LOW	tests/test_hypergraph.py	2	CODE
LOW	tests/test_hypergraph.py	8	CODE
LOW	tests/test_carried_hyperedge_remap.py	9	CODE
LOW	tests/test_ts_parse_warning.py	11	CODE
LOW	tests/test_mcp_ingest.py	2	CODE
LOW	tests/test_mcp_ingest.py	7	CODE
LOW	tests/test_cross_extension_reexport_self_cycle.py	17	CODE
LOW	tests/test_google_workspace.py	1	CODE
LOW	tests/test_hollow_chunks_arm_shrink_guard.py	12	CODE
529 more matches not shown…

Excessive Try-Catch Wrapping237 hits · 213 pts

Severity	File	Line	Snippet	Context
LOW	worked/mixed-corpus/raw/cluster.py	88	except Exception:	CODE
LOW	worked/example/raw/parser.py	77	except Exception as e:	CODE
LOW	worked/httpx/raw/auth.py	112	except Exception:	CODE
LOW	worked/httpx/raw/transport.py	78	except Exception as exc:	CODE
LOW	worked/httpx/raw/transport.py	131	except Exception as exc:	CODE
LOW	tests/test_falkordb_integration.py	43	except Exception as e: # pragma: no cover - depends on local environment	CODE
LOW	tests/test_falkordb_integration.py	47	except Exception as e: # pragma: no cover - depends on local environment	CODE
LOW⚡	tests/test_falkordb_integration.py	58	except Exception:	CODE
LOW⚡	tests/test_falkordb_integration.py	63	except Exception:	CODE
LOW⚡	tests/test_llm_backends.py	878	except Exception:	CODE
MEDIUM	tests/bench_extract.py	119	print(f"Error: {target} does not exist", file=sys.stderr)	CODE
LOW	…erpowers/plans/2026-05-04-incremental-updates-dedup.md	780	except Exception as exc:	CODE
LOW	…erpowers/plans/2026-05-04-incremental-updates-dedup.md	790	except Exception as exc:	CODE
LOW	…erpowers/plans/2026-05-04-incremental-updates-dedup.md	841	except Exception as exc:	CODE
LOW	…erpowers/plans/2026-05-04-incremental-updates-dedup.md	1044	except Exception as exc:	CODE
LOW	graphify/build.py	455	except Exception:	CODE
LOW	graphify/file_slice.py	237	except Exception:	CODE
LOW	graphify/ingest.py	112	except Exception:	CODE
LOW	graphify/ingest.py	179	except Exception:	CODE
LOW	graphify/hooks.py	181	except Exception:	CODE
LOW	graphify/hooks.py	186	except Exception as exc:	CODE
LOW	graphify/hooks.py	230	except Exception:	CODE
LOW	graphify/hooks.py	235	except Exception as exc:	CODE
LOW	graphify/manifest_ingest.py	64	except Exception as exc: # noqa: BLE001 — a malformed manifest must not abort extraction	CODE
LOW	graphify/global_graph.py	19	except Exception as exc:	CODE
LOW	graphify/global_graph.py	34	except Exception as rename_exc:	CODE
LOW	graphify/diagnostics.py	241	except Exception as exc:	CODE
LOW	graphify/querylog.py	79	except Exception:	CODE
LOW	graphify/cache.py	34	except Exception:	CODE
LOW	graphify/cache.py	403	except Exception:	CODE
LOW	graphify/cache.py	1111	except Exception:	CODE
MEDIUM	graphify/serve.py	1477	def _relay() -> None:	CODE
LOW	graphify/serve.py	51	except Exception:	CODE
LOW	graphify/serve.py	64	except Exception:	CODE
LOW	graphify/serve.py	1484	except Exception:	CODE
LOW	graphify/serve.py	1939	except Exception:	CODE
LOW	graphify/serve.py	1976	except Exception:	CODE
LOW	graphify/serve.py	2014	except Exception as exc:	CODE
LOW	graphify/serve.py	2039	except Exception as exc:	CODE
LOW	graphify/serve.py	2052	except Exception as exc:	CODE
LOW	graphify/serve.py	2087	except Exception:	CODE
LOW⚡	graphify/llm.py	3427	except Exception:	CODE
LOW⚡	graphify/llm.py	3444	except Exception as exc:	CODE
LOW	graphify/llm.py	53	except Exception: # network failure on first-use download, etc.	CODE
LOW	graphify/llm.py	242	except Exception:	CODE
LOW	graphify/llm.py	297	except Exception:	CODE
LOW	graphify/llm.py	678	except Exception: # noqa: BLE001 — one unreadable file (e.g. a malformed PDF) must not disable binding for the	CODE
LOW	graphify/llm.py	2010	except Exception as _exc: # noqa: BLE001 — evidence-binding is advisory	CODE
LOW	graphify/llm.py	2079	except Exception:	CODE
LOW	graphify/llm.py	2361	except Exception as exc: # noqa: BLE001 — re-raise unless it's a known context overflow or timeout	CODE
LOW	graphify/llm.py	2604	except Exception as exc: # noqa: BLE001 — caller-facing surface, log + continue	CODE
LOW	graphify/llm.py	2658	except Exception as _exc: # noqa: BLE001 — checkpoint is best-effort	CODE
LOW	graphify/llm.py	3071	except Exception:	CODE
LOW	graphify/llm.py	3364	except Exception as exc: # noqa: BLE001 - reported per-batch; surfaced below	CODE
LOW	graphify/multigraph_compat.py	64	except Exception as exc:	CODE
LOW⚡	graphify/export.py	245	except Exception:	CODE
LOW⚡	graphify/export.py	250	except Exception:	CODE
LOW⚡	graphify/export.py	254	except Exception:	CODE
LOW⚡	graphify/export.py	260	except Exception:	CODE
LOW⚡	graphify/export.py	273	except Exception:	CODE
177 more matches not shown…

Deep Nesting277 hits · 196 pts

Severity	File	Line	Context
LOW	tools/skillgen/gen.py	431	CODE
LOW	tools/skillgen/gen.py	469	CODE
LOW	tools/skillgen/gen.py	711	CODE
LOW	worked/example/raw/parser.py	29	CODE
LOW	tests/test_pg_introspect.py	16	CODE
LOW	tests/test_pg_introspect.py	40	CODE
LOW	tests/test_multilang.py	167	CODE
LOW	tests/test_multilang.py	215	CODE
LOW	tests/test_multilang.py	224	CODE
LOW	tests/test_skillgen.py	424	CODE
LOW	graphify/build.py	711	CODE
LOW	graphify/build.py	798	CODE
LOW	graphify/build.py	1401	CODE
LOW	graphify/build.py	2001	CODE
LOW	graphify/ingest.py	13	CODE
LOW	graphify/hooks.py	419	CODE
LOW	graphify/hooks.py	533	CODE
LOW	graphify/manifest_ingest.py	115	CODE
LOW	graphify/manifest_ingest.py	145	CODE
LOW	graphify/cargo_introspect.py	47	CODE
LOW	graphify/benchmark.py	37	CODE
LOW	graphify/security.py	103	CODE
LOW	graphify/csharp_dispatch.py	66	CODE
LOW	graphify/cache.py	44	CODE
LOW	graphify/cache.py	328	CODE
LOW	graphify/cache.py	428	CODE
LOW	graphify/cache.py	572	CODE
LOW	graphify/cache.py	1359	CODE
LOW	graphify/cache.py	1621	CODE
LOW	graphify/serve.py	262	CODE
LOW	graphify/serve.py	290	CODE
LOW	graphify/serve.py	462	CODE
LOW	graphify/serve.py	924	CODE
LOW	graphify/serve.py	982	CODE
LOW	graphify/serve.py	1249	CODE
LOW	graphify/serve.py	1365	CODE
LOW	graphify/serve.py	1466	CODE
LOW	graphify/serve.py	1508	CODE
LOW	graphify/serve.py	1477	CODE
LOW	graphify/serve.py	1992	CODE
LOW	graphify/llm.py	265	CODE
LOW	graphify/llm.py	1029	CODE
LOW	graphify/llm.py	1345	CODE
LOW	graphify/llm.py	1885	CODE
LOW	graphify/llm.py	2231	CODE
LOW	graphify/llm.py	2506	CODE
LOW	graphify/llm.py	2826	CODE
LOW	graphify/export.py	36	CODE
LOW	graphify/export.py	126	CODE
LOW	graphify/export.py	266	CODE
LOW	graphify/ruby_resolution.py	53	CODE
LOW	graphify/validate.py	10	CODE
LOW	graphify/callflow_html.py	582	CODE
LOW	graphify/cross_repo_types.py	32	CODE
LOW	graphify/cli.py	160	CODE
LOW	graphify/cli.py	649	CODE
LOW	graphify/cli.py	680	CODE
LOW	graphify/cli.py	930	CODE
LOW	graphify/dedup.py	463	CODE
LOW	graphify/dedup.py	503	CODE
217 more matches not shown…

Over-Commented Block176 hits · 146 pts

Severity	File	Line	Snippet	Context
LOW	pyproject.toml	81	# extract_pascal() uses tree-sitter-pascal for AST-quality extraction (more	COMMENT
LOW	tools/skillgen/platforms.toml	1	# skillgen platform manifest	COMMENT
LOW	tools/skillgen/platforms.toml	21	# dispatch Part-B dispatch fragment basename under fragments/dispatch/.	COMMENT
LOW	tools/skillgen/gen.py	41	FRAGMENTS_DIR = SKILLGEN_DIR / "fragments"	COMMENT
LOW	tools/skillgen/gen.py	61	"""The git ref for a split host's own pre-split skill body."""	COMMENT
LOW	tools/skillgen/gen.py	141	_QUERY_REFERENCE = "references/query/default.md"	COMMENT
LOW	tools/skillgen/gen.py	201	#	COMMENT
LOW	tools/skillgen/gen.py	221	# lives in the core or a reference under the new heading; the audit confirms	COMMENT
LOW	tools/skillgen/gen.py	361	#	COMMENT
LOW	tools/skillgen/fragments/core/core.md	501	# Save manifest for --update	COMMENT
LOW	tools/skillgen/fragments/references/shared/update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	…n/expected/graphify__skills__pi__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	tools/skillgen/expected/graphify__skill-trae.md	561	from datetime import datetime, timezone	COMMENT
LOW	…pected/graphify__skills__vscode__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	tools/skillgen/expected/graphify__skill-windows.md	601	#	COMMENT
LOW	tools/skillgen/expected/graphify__skill.md	561	import json	COMMENT
LOW	…pected/graphify__skills__agents__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	…expected/graphify__skills__trae__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	…xpected/graphify__skills__codex__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	tools/skillgen/expected/graphify__skill-kilo.md	561	import json	COMMENT
LOW	…cted/graphify__skills__opencode__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	…pected/graphify__skills__claude__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	…expected/graphify__skills__kilo__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	tools/skillgen/expected/graphify__skill-droid.md	561	from graphify.detect import save_manifest	COMMENT
LOW	…expected/graphify__skills__kiro__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	…xpected/graphify__skills__droid__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	tools/skillgen/expected/graphify__skill-kiro.md	561	import json	COMMENT
LOW	tools/skillgen/expected/graphify__skill-opencode.md	561	# In --update mode, 'all_files' carries the full corpus; 'files' is the changed	COMMENT
LOW	tools/skillgen/expected/graphify__skill-pi.md	561	import json	COMMENT
LOW	…ected/graphify__skills__copilot__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	tools/skillgen/expected/graphify__skill-copilot.md	561	import json	COMMENT
LOW	tools/skillgen/expected/graphify__skill-vscode.md	561		COMMENT
LOW	tools/skillgen/expected/graphify__skill-agents.md	561	from graphify.detect import save_manifest	COMMENT
LOW	tools/skillgen/expected/graphify__skill-claw.md	561	import json	COMMENT
LOW	tools/skillgen/expected/graphify__skill-codex.md	561	from graphify.detect import save_manifest	COMMENT
LOW	…ected/graphify__skills__windows__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	…/expected/graphify__skills__amp__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	tools/skillgen/expected/graphify__skill-amp.md	561	from graphify.detect import save_manifest	COMMENT
LOW	…expected/graphify__skills__claw__references__update.md	141	# prior run's baseline (prevents ghost-node reports on subsequent updates).	COMMENT
LOW	tests/test_cross_extension_reexport_self_cycle.py	161	assert not self_loops, f"unexpected self-loop among siblings; got {self_loops}"	COMMENT
LOW	tests/test_detect.py	1781	# "token_config.yaml": "token" followed by "_" (not alpha) → flagged.	COMMENT
LOW	tests/test_build.py	1561	],	COMMENT
LOW	.github/workflows/publish.yml	1	name: Publish to PyPI	COMMENT
LOW	graphify/build.py	1	# assemble node+edge dicts into a NetworkX graph, preserving edge direction	COMMENT
LOW	graphify/build.py	641	# build directory into node IDs when updated on Windows (#2618).	COMMENT
LOW	graphify/build.py	981	# uses bare-stem IDs (bpe_get_pairs) — different IDs, same symbol.	COMMENT
LOW	graphify/build.py	1001	attrs = G.nodes[nid]	COMMENT
LOW	graphify/build.py	1061		COMMENT
LOW	graphify/build.py	1081	# re-keying aid instead of a silent cross-file (and cross-language) merge.	COMMENT
LOW	graphify/build.py	1161	tgt = norm_to_id.get(_normalize_id(tgt), tgt)	COMMENT
LOW	graphify/build.py	1221	and src_ext and tgt_ext and src_fam != tgt_fam	COMMENT
LOW	graphify/build.py	1241	# causing display functions to show edges backwards.	COMMENT
LOW	graphify/build.py	1681	# Re-extracted files REPLACE their prior contribution. Every source_file	COMMENT
LOW	graphify/build.py	1861	if edges_to_remove:	COMMENT
LOW	graphify/build.py	1941		COMMENT
LOW	graphify/file_slice.py	21		COMMENT
LOW	graphify/skill-windows.md	601	#	COMMENT
LOW	graphify/hooks.py	21	# _PINNED was recorded at hook-install time; tried first so the hook works even	COMMENT
LOW	graphify/skill-trae.md	561	from datetime import datetime, timezone	COMMENT
LOW	graphify/paths.py	101	_atomic_replace(path, lambda f: json.dump(obj, f, indent=indent, ensure_ascii=ensure_ascii))	COMMENT
116 more matches not shown…

Modern AI Meta-Vocabulary13 hits · 40 pts

Severity	File	Line	Snippet	Context
MEDIUM	CHANGELOG.md	334	- Fix: the `claude-cli` backend now reads the CLI's structured-output channel instead of trusting free-form prose (#2076	CODE
MEDIUM⚡	tests/test_claude_cli_backend.py	243	# Newer Claude Code CLIs treat a bare file-dump prompt as an agentic task and	COMMENT
MEDIUM⚡	tests/test_llm_backends.py	736	# `chat_template_kwargs.enable_thinking=false` or the model emits chain-of-thought	COMMENT
MEDIUM	tests/test_llm_backends.py	280	# produce when a chunk overflows the model's context window.	COMMENT
MEDIUM⚡	tests/test_llm_backends.py	879	pass # mock scaffolding may not be complete; we only care about the call	CODE
MEDIUM⚡	tests/test_labeling.py	248	# 16k context window of self-hosted reasoning models (Qwen3, Llama-3.1 8B).	COMMENT
MEDIUM	graphify/llm.py	1022	# Reasoning models (nemotron, deepseek-r1, qwq, …) emit their chain of thought	COMMENT
MEDIUM	graphify/llm.py	1682	# object directly. The <untrusted_source> guardrails in _extraction_system	COMMENT
MEDIUM	graphify/llm.py	1722	# agentic task and REPORT the extraction in prose ("Knowledge graph	COMMENT
MEDIUM	graphify/llm.py	2074	# looks like. The chunk then blows the context window and falls into	COMMENT
MEDIUM	graphify/llm.py	3137	# When graphify runs inside an orchestrating agent (Claude Code / Gemini CLI),	COMMENT
MEDIUM	graphify/cli.py	2086	# standalone there is no orchestrating agent to do skill.md Step 5, so	COMMENT
MEDIUM	graphify/extractors/bash.py	126	# Cross-file resolution scaffolding consumed by resolve_bash_source_edges in	COMMENT

Verbosity Indicators13 hits · 26 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/test_pipeline.py	25	# Step 1: detect	COMMENT
LOW⚡	tests/test_pipeline.py	31	# Step 2: extract (AST only - no LLM)	COMMENT
LOW⚡	tests/test_pipeline.py	38	# Step 3: build	COMMENT
LOW⚡	tests/test_pipeline.py	43	# Step 4: cluster	COMMENT
LOW⚡	tests/test_pipeline.py	51	# Step 5: analyze	COMMENT
LOW⚡	tests/test_pipeline.py	63	# Step 6: report	COMMENT
LOW⚡	tests/test_pipeline.py	70	# Step 7: export - JSON	COMMENT
LOW⚡	tests/test_pipeline.py	78	# Step 8: export - HTML	COMMENT
LOW⚡	tests/test_pipeline.py	86	# Step 9: export - Obsidian vault	COMMENT
LOW	graphify/paths.py	284	# Step 2: path proximity over the survivors.	COMMENT
LOW	graphify/analyze.py	669	# Step 1: Build a directed file-level graph from import/re-export edges.	COMMENT
LOW	graphify/analyze.py	710	# Step 2: Find simple cycles, bounded by length.	COMMENT
LOW	graphify/analyze.py	722	# Step 3: Sort by length (shortest = tightest coupling), then deduplicate.	COMMENT

Fake / Example Data31 hits · 26 pts

Severity	File	Line	Snippet	Context
LOW	tests/test_extract_cli.py	67	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	127	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	180	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	246	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	315	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	368	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	485	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	553	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	600	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	636	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	1394	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	1522	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_extract_cli.py	1582	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW⚡	tests/test_dedup.py	972	{"id": "acme_corp_one", "label": "Acme Corp",	CODE
LOW⚡	tests/test_dedup.py	974	{"id": "acme_corp_two", "label": "Acme Corp",	CODE
LOW⚡	tests/test_dedup.py	969	survivor: {'Acme Corp' doc1, 'Acme Corp' doc2, 'Acme Corp.' doc3} all	STRING
LOW	tests/test_incomplete_build_guard.py	42	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_incomplete_build_guard.py	128	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_hollow_chunks_arm_shrink_guard.py	40	monkeypatch.setenv("ANTHROPIC_API_KEY", "sk-test-fake-key")	CODE
LOW	tests/test_detect.py	2760	doc_path.write_bytes(b"placeholder")	CODE
LOW⚡	tests/test_llm_backends.py	206	big.write_text(("# Section\n\n" + "lorem ipsum dolor sit amet " * 60 + "\n\n") * 30)	CODE
LOW⚡	tests/test_llm_backends.py	206	big.write_text(("# Section\n\n" + "lorem ipsum dolor sit amet " * 60 + "\n\n") * 30)	CODE
LOW	tests/test_llm_backends.py	1270	"https://api.moonshot.ai/v1", "fake-key", "kimi-k2",	CODE
LOW	tests/test_llm_backends.py	1298	monkeypatch.setattr(llm, "_get_backend_api_key", lambda _b: "fake-key")	CODE
LOW	tests/test_llm_backends.py	1326	monkeypatch.setattr(llm, "_get_backend_api_key", lambda _b: "fake-key")	CODE
LOW⚡	tests/test_labeling.py	199	assert source == "placeholder"	CODE
LOW⚡	tests/test_labeling.py	207	assert source == "placeholder"	CODE
LOW⚡	tests/test_file_slice.py	28	text = ("# Heading\n\n" + "lorem ipsum " * 40 + "\n\n") * 20	CODE
LOW⚡	graphify/llm.py	3436	return _placeholder_community_labels(communities), "placeholder"	CODE
LOW⚡	graphify/llm.py	3451	return _placeholder_community_labels(communities), "placeholder"	CODE
LOW⚡	graphify/llm.py	3423	``"placeholder"``. Never raises."""	STRING

Overly Generic Function Names12 hits · 11 pts

Severity	File	Line	Snippet	Context
LOW	worked/httpx/raw/transport.py	13	def handle_request(self, request: Request) -> Response:	CODE
LOW	worked/httpx/raw/transport.py	70	def handle_request(self, request: Request) -> Response:	CODE
LOW	worked/httpx/raw/transport.py	112	def handle_request(self, request: Request) -> Response:	CODE
LOW	worked/httpx/raw/transport.py	126	def handle_request(self, request: Request) -> Response:	CODE
LOW	tests/test_watch.py	2087	(corpus / "b.py").write_text("def helper():\n return 2\n", encoding="utf-8")	CODE
LOW	tests/test_watch.py	2142	(corpus / "b.py").write_text("def helper():\n return 2\n", encoding="utf-8")	CODE
LOW	tests/test_watch.py	2168	(corpus / "b.py").write_text("def helper():\n return 2\n", encoding="utf-8")	CODE
LOW	tests/test_rationale.py	193	def helper() -> int:	CODE
LOW	tests/test_src_layout_import_resolution.py	21	"mypkg/helpers.py": "def helper():\n return 1\n",	CODE
LOW	tests/test_incremental.py	318	(pkg / "b.py").write_text("def helper():\n return 1\n")	CODE
LOW⚡	tests/test_case_sensitive_resolution.py	70	"h.py": "def helper():\n return 1\n",	CODE
LOW	tests/test_python_import_resolution.py	51	target = _write(tmp_path / "pkg" / "sibling.py", "def helper():\n return 1\n")	CODE

AI Slop Vocabulary4 hits · 10 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/test_languages.py	2368	# More robust: no target should contain a brace character	COMMENT
MEDIUM	tests/test_hook_guard.py	21	# Direct-call harness: hermetic w.r.t. the ambient GRAPHIFY_OUT env.	COMMENT
MEDIUM	graphify/extract.py	6625	# path.name)``). Resolving file membership by that shared string is robust	COMMENT
LOW	graphify/extract.py	1589	# Edge target already a real node - just add the edge, don't add a node.	COMMENT

Modern Structural Boilerplate6 hits · 6 pts

Severity	File	Line	Snippet	Context
LOW	tests/test_word_count_cache.py	13	def _settle(path: Path) -> None:	CODE
LOW	tests/test_stat_index_portability.py	61	def _settle(path: Path) -> None:	CODE
LOW	tests/test_hooks.py	380	def _set_hookspath(repo: Path, value: str) -> None:	CODE
LOW	graphify/manifest_ingest.py	25	__all__ = ["is_package_manifest_path", "extract_package_manifest", "PACKAGE_MANIFEST_NAMES"]	CODE
LOW	graphify/manifest.py	4	__all__ = ["save_manifest", "load_manifest", "detect_incremental"]	CODE
LOW	graphify/ids.py	47	__all__ = ["normalize_id", "make_id"]	CODE

Redundant / Tautological Comments3 hits · 4 pts

Severity	File	Line	Snippet	Context
LOW	graphify/detect.py	527	# Check if it's a converted paper	COMMENT
LOW	graphify/extractors/bash.py	392	# Check if the leading variable is tracked	COMMENT
LOW	graphify/extractors/dart.py	36	# Check if this is a part-of file and redirect to parent	COMMENT

AI Structural Patterns6 hits · 3 pts

Severity	File	Line	Context
LOW	tests/test_prs.py	29	CODE
LOW	graphify/cache.py	1359	CODE
LOW	graphify/serve.py	2259	CODE
LOW	graphify/llm.py	2506	CODE
LOW	graphify/callflow_html.py	1608	CODE
LOW	graphify/callflow_html.py	1543	CODE

Analysis Overview

What These Metrics Mean

Score History

Severity Breakdown

Directory Score Breakdown

Pattern Findings