A comprehensive collection of Agent Skills for context engineering, multi-agent architectures, and production agent systems. Use when building, optimizing, or debugging agent systems that require effective context management.
This report summarizes scanner evidence for muratcankoylan/Agent-Skills-for-Context-Engineering, a Python project with 18,103 GitHub stars. SynthScan examined 97,346 lines of code across 414 source files, recording 699 pattern matches distributed across 19 syntactic categories. The legacy adjusted pattern signal is 13.3 (Moderate pattern signal); it is not an authorship estimate.
Use the findings to ask whether maintainers can explain intent, verify dependencies, simplify unnecessary scaffolding, and focus review effort. Risk Payload v1 adds ownership, supply-chain, over-engineering, and review-effort vectors when available. These are prompts for human verification, not probabilities, security findings, or measured maintenance costs.
Use each vector to guide manual verification of the underlying findings.
Can maintainers explain intent, assumptions, and trade-offs? 397 finding(s).
Are imports declared and package/API names verified? 96 finding(s).
Are wrappers, guards, and repeated structures necessary? 425 finding(s).
Which changes need focused human review? 699 finding(s).
This chart tracks the legacy adjusted pattern score across scan runs. Changes can reflect source changes, scan coverage, or detector/scoring versions; they do not measure AI adoption or prove that a team refactored code. Compare runs only when their scoring versions are compatible. The dashed line tracks the raw pattern-hit count.
Groups findings by configured severity weight. Severity is not a confidence estimate, security rating, or proof that a package is missing. Verify imports against the project's manifests and inspect each finding in its local design context.
This horizontal bar chart shows where configured pattern scores accumulate across directories. Treat the bars as locations to inspect, not as evidence of authorship or code quality. Use the file-level findings to decide whether a directory needs a focused ownership, dependency, complexity, or review check.
The scanner identified 699 distinct pattern matches across 19 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a detector match to inspect in context. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.
Reading the findings table: The Severity column indicates the configured finding weight (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — legacy comment-context matches receive a ×1.5 score weight. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier under the legacy scoring model.
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| MEDIUM | …/interleaved-thinking/examples/03_full_optimization.py | 33 | # ============================================================================= | COMMENT |
| MEDIUM | …/interleaved-thinking/examples/03_full_optimization.py | 35 | # ============================================================================= | COMMENT |
| MEDIUM | …/interleaved-thinking/examples/03_full_optimization.py | 165 | # ============================================================================= | COMMENT |
| MEDIUM | …/interleaved-thinking/examples/03_full_optimization.py | 168 | # ============================================================================= | COMMENT |
| MEDIUM | …/interleaved-thinking/examples/03_full_optimization.py | 834 | # ============================================================================= | STRING |
| MEDIUM | …/interleaved-thinking/examples/03_full_optimization.py | 836 | # ============================================================================= | STRING |
| MEDIUM⚡ | …/interleaved-thinking/examples/03_full_optimization.py | 1011 | # ============================================================================= | COMMENT |
| MEDIUM⚡ | …/interleaved-thinking/examples/03_full_optimization.py | 1013 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 12 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 14 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 37 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 39 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 74 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 76 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 107 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 109 | # ============================================================================= | COMMENT |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 133 | # ============================================================================= | STRING |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 135 | # ============================================================================= | STRING |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 159 | # ============================================================================= | STRING |
| MEDIUM | examples/book-sft-pipeline/scripts/pipeline_example.py | 161 | # ============================================================================= | STRING |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 105 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 107 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 303 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 305 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 386 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 388 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 485 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 487 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 560 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | skills/multi-agent-patterns/scripts/coordination.py | 562 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM⚡ | skills/bdi-mental-states/references/rdf-examples.md | 13 | # ============================================================ | COMMENT |
| MEDIUM⚡ | skills/bdi-mental-states/references/rdf-examples.md | 15 | # ============================================================ | COMMENT |
| MEDIUM⚡ | skills/bdi-mental-states/references/rdf-examples.md | 23 | # ============================================================ | COMMENT |
| MEDIUM⚡ | skills/bdi-mental-states/references/rdf-examples.md | 25 | # ============================================================ | COMMENT |
| MEDIUM | skills/bdi-mental-states/references/rdf-examples.md | 51 | # ============================================================ | COMMENT |
| MEDIUM | skills/bdi-mental-states/references/rdf-examples.md | 53 | # ============================================================ | COMMENT |
| MEDIUM | skills/bdi-mental-states/references/rdf-examples.md | 65 | # ============================================================ | COMMENT |
| MEDIUM | skills/bdi-mental-states/references/rdf-examples.md | 67 | # ============================================================ | COMMENT |
| MEDIUM | skills/bdi-mental-states/references/rdf-examples.md | 85 | # ============================================================ | COMMENT |
| MEDIUM | skills/bdi-mental-states/references/rdf-examples.md | 87 | # ============================================================ | COMMENT |
| MEDIUM | skills/bdi-mental-states/references/rdf-examples.md | 120 | # ============================================================ | COMMENT |
| MEDIUM | skills/bdi-mental-states/references/rdf-examples.md | 122 | # ============================================================ | COMMENT |
| MEDIUM⚡ | skills/bdi-mental-states/references/rdf-examples.md | 154 | # ============================================================ | COMMENT |
| MEDIUM⚡ | skills/bdi-mental-states/references/rdf-examples.md | 156 | # ============================================================ | COMMENT |
| MEDIUM⚡ | skills/bdi-mental-states/references/rdf-examples.md | 162 | # ============================================================ | COMMENT |
| MEDIUM⚡ | skills/bdi-mental-states/references/rdf-examples.md | 164 | # ============================================================ | COMMENT |
| MEDIUM⚡ | …ls/context-degradation/scripts/degradation_detector.py | 41 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM⚡ | …ls/context-degradation/scripts/degradation_detector.py | 43 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM⚡ | …ls/context-degradation/scripts/degradation_detector.py | 162 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM⚡ | …ls/context-degradation/scripts/degradation_detector.py | 164 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 108 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 110 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 221 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 223 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 381 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 383 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 515 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 517 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 553 | # --------------------------------------------------------------------------- | COMMENT |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 555 | # --------------------------------------------------------------------------- | COMMENT |
| 90 more matches not shown… | ||||
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW | …rleaved-thinking/reasoning_trace_optimizer/analyzer.py | 266 | def _format_trace_for_analysis(self, trace: ReasoningTrace) -> str: | CODE |
| LOW | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 410 | def _save_iteration_artifacts(self, iteration: LoopIteration, num: int) -> None: | CODE |
| LOW | …leaved-thinking/reasoning_trace_optimizer/optimizer.py | 247 | def suggest_tool_improvements( | CODE |
| LOW | …leaved-thinking/reasoning_trace_optimizer/optimizer.py | 319 | def _format_patterns_for_tools(self, patterns: list) -> str: | CODE |
| LOW | …leaved-thinking/reasoning_trace_optimizer/optimizer.py | 325 | def _parse_optimization_response( | CODE |
| LOW | …leaved-thinking/reasoning_trace_optimizer/optimizer.py | 414 | def format_optimization_report(result: OptimizationResult) -> str: | CODE |
| LOW | …-thinking/reasoning_trace_optimizer/skill_generator.py | 99 | def _format_numbered_list_to_markdown(items: list | str) -> str: | STRING |
| LOW | …-thinking/reasoning_trace_optimizer/skill_generator.py | 115 | def _format_examples_to_markdown(examples: list | str) -> str: | STRING |
| LOW | examples/interleaved-thinking/tests/test_models.py | 19 | def test_thinking_block_creation(): | CODE |
| LOW | examples/interleaved-thinking/tests/test_models.py | 45 | def test_reasoning_trace_creation(): | CODE |
| LOW | examples/interleaved-thinking/tests/test_models.py | 89 | def test_analysis_result_creation(): | CODE |
| LOW | examples/interleaved-thinking/tests/test_models.py | 97 | def test_optimization_result_creation(): | CODE |
| LOW | examples/interleaved-thinking/tests/test_models.py | 113 | def test_loop_result_creation(): | CODE |
| LOW | …es/digital-brain-skill/agents/scripts/content_ideas.py | 32 | def get_top_performing_content(): | CODE |
| LOW | examples/book-sft-pipeline/references/tinker.txt | 3120 | def _convert_tensor_dtype_to_numpy(dtype: TensorDtype) -> npt.DTypeLike: | CODE |
| LOW | examples/book-sft-pipeline/references/tinker.txt | 3130 | def _convert_tensor_dtype_to_torch(dtype: TensorDtype) -> "torch.dtype": | CODE |
| LOW | examples/book-sft-pipeline/references/tinker.txt | 3144 | def _convert_numpy_dtype_to_tensor(dtype: np.dtype[Any]) -> TensorDtype: | CODE |
| LOW | examples/book-sft-pipeline/references/tinker.txt | 3154 | def _convert_torch_dtype_to_tensor(dtype: "torch.dtype") -> TensorDtype: | CODE |
| LOW | skills/multi-agent-patterns/references/frameworks.md | 256 | def delegate_with_full_context(planner_state, subagent): | CODE |
| LOW | skills/multi-agent-patterns/references/frameworks.md | 272 | def delegate_with_instructions(task_spec, subagent): | CODE |
| LOW | skills/multi-agent-patterns/scripts/coordination.py | 283 | def _simulate_worker_response( | CODE |
| LOW | skills/multi-agent-patterns/scripts/coordination.py | 435 | def calculate_weighted_consensus(self, topic_id: str) -> Dict[str, Any]: | CODE |
| LOW | skills/multi-agent-patterns/scripts/coordination.py | 535 | def _activate_circuit_breaker(self, agent_id: str) -> None: | CODE |
| LOW | skills/bdi-mental-states/SKILL.md | 219 | def augment_llm_with_bdi_ontology(prompt, ontology_graph): | CODE |
| LOW | …/bdi-mental-states/references/framework-integration.md | 243 | def _validate_against_ontology(self, triples: str) -> dict: | CODE |
| LOW | …/bdi-mental-states/references/framework-integration.md | 303 | def detect_location_inconsistency(graph: Graph) -> list[str]: | STRING |
| LOW | …/bdi-mental-states/references/framework-integration.md | 558 | def request_belief_confirmation(self, belief_uri: str, receiver: str) -> ACLMessage: | CODE |
| LOW | skills/context-degradation/references/patterns.md | 12 | def measure_attention_distribution(model, context_tokens, query): | CODE |
| LOW | skills/context-degradation/references/patterns.md | 125 | def analyze_error_propagation(context, error_points): | CODE |
| LOW | skills/context-degradation/references/patterns.md | 278 | def truncate_context_for_recovery(context, preserved_elements, target_size): | CODE |
| LOW⚡ | …ls/context-degradation/scripts/degradation_detector.py | 45 | def measure_attention_distribution( | CODE |
| LOW⚡ | …ls/context-degradation/scripts/degradation_detector.py | 166 | def analyze_context_structure(context: str) -> Dict[str, object]: | CODE |
| LOW | …ls/context-degradation/scripts/degradation_detector.py | 363 | def _detect_hallucination_markers(self, text: str) -> List[str]: | CODE |
| LOW | …ls/context-degradation/scripts/degradation_detector.py | 488 | def _generate_recommendations( | CODE |
| LOW | …ontext-compression/tests/test_compression_evaluator.py | 19 | def test_json_ground_truth_terms_score_when_response_mentions_artifacts( | CODE |
| LOW | …ontext-compression/tests/test_compression_evaluator.py | 38 | def test_plain_text_ground_truth_still_uses_substring_match(self) -> None: | CODE |
| LOW | …s/context-compression/scripts/compression_evaluator.py | 520 | def _ground_truth_overlap_ratio(self, | CODE |
| LOW | …s/context-compression/scripts/compression_evaluator.py | 534 | def _extract_ground_truth_terms(self, ground_truth: str) -> List[str]: | CODE |
| LOW | …s/context-compression/scripts/compression_evaluator.py | 557 | def _calculate_dimension_scores(self, | CODE |
| LOW | …s/context-compression/scripts/compression_evaluator.py | 738 | def evaluate_compression_quality( | CODE |
| LOW | skills/memory-systems/references/implementation.md | 280 | def create_temporal_relationship( | CODE |
| LOW | skills/memory-systems/scripts/memory_store.py | 352 | def create_temporal_relationship( | CODE |
| LOW | …anced-evaluation/references/implementation-patterns.md | 77 | async def compare_with_bias_mitigation(response_a, response_b, prompt, criteria, model): | CODE |
| LOW | …anced-evaluation/references/implementation-patterns.md | 287 | async def test_full_evaluation_pipeline(): | CODE |
| LOW | …anced-evaluation/references/implementation-patterns.md | 302 | async def test_position_bias_mitigation(): | CODE |
| LOW | …ills/advanced-evaluation/references/bias-mitigation.md | 175 | async def relevance_weighted_evaluation(response, prompt, criteria): | CODE |
| LOW⚡ | …ills/advanced-evaluation/scripts/evaluation_example.py | 143 | def pairwise_comparison_example() -> dict[str, Any]: | CODE |
| LOW⚡ | …ills/advanced-evaluation/scripts/evaluation_example.py | 261 | def rubric_generation_example() -> dict[str, Any]: | CODE |
| LOW | …/context-fundamentals/references/context-components.md | 200 | def get_customer_response_format(): | CODE |
| LOW⚡ | skills/context-fundamentals/scripts/context_manager.py | 320 | def validate_context_structure(context: Dict[str, Any]) -> Dict[str, Any]: | CODE |
| LOW | …ls/project-development/references/pipeline-patterns.md | 316 | def process_batch_with_partial_success(items: list) -> tuple[list, list]: | CODE |
| LOW | …ls/project-development/references/pipeline-patterns.md | 573 | def test_parse_stage_malformed(): | STRING |
| LOW | skills/evaluation/references/metrics.md | 180 | def get_complexity_distribution(self): | CODE |
| LOW | skills/evaluation/scripts/evaluator.py | 340 | def get_complexity_distribution(self) -> Dict[str, int]: | CODE |
| LOW | skills/context-optimization/scripts/compaction.py | 492 | def generate_cache_recommendations(hits: int, misses: int) -> List[str]: | CODE |
| LOW | skills/tool-design/SKILL.md | 127 | def optimize_tool_description(tool_spec, failure_examples): | CODE |
| LOW⚡ | skills/tool-design/scripts/description_generator.py | 111 | def generate_tool_description(tool_spec: ToolSpec) -> str: | STRING |
| LOW | …ls/hosted-agents/references/infrastructure-patterns.md | 678 | def get_app_installation_token(self, repo: str) -> str: | CODE |
| LOW | skills/hosted-agents/scripts/sandbox_manager.py | 347 | async def _create_sandbox_from_image(self, image: RepositoryImage) -> Sandbox: | CODE |
| LOW | researcher/schemas/typescript/src/semantics.ts | 103 | function validateCandidateArtifact(record: Record<string, JsonValue>): void { | CODE |
| 157 more matches not shown… | ||||
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| MEDIUM | examples/interleaved-thinking/README.md | 121 | # Capture reasoning trace | COMMENT |
| MEDIUM | examples/interleaved-thinking/README.md | 332 | │ ├── trace.json # Full reasoning trace | CODE |
| MEDIUM | examples/interleaved-thinking/README.md | 474 | # Capture a reasoning trace | COMMENT |
| MEDIUM | examples/interleaved-thinking/SKILL.md | 128 | # Capture reasoning trace | COMMENT |
| MEDIUM | examples/interleaved-thinking/docs/agentthinking.md | 3 | It's been fantastic to see the community dive into our new [**MiniMax M2**](https://huggingface.co/MiniMaxAI/MiniMax-M2) | CODE |
| MEDIUM | …/interleaved-thinking/examples/03_full_optimization.py | 734 | ### RAG System Design | COMMENT |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_1/trace.txt | 112 | Tool: save_note({"content": "# Key Concepts in Context Engineering\n\n## Definition\nContext engineering is the delibe | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_1/trace.txt | 115 | Tool: save_note({"content": "# Best Practices and Techniques\n\n## Context Management Strategies\n- **Progressive Disc | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_1/trace.txt | 118 | Tool: save_note({"content": "# Practical Recommendations for Agent Developers\n\n## Architecture Design\n1. **Start Si | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_1/trace.txt | 118 | Tool: save_note({"content": "# Practical Recommendations for Agent Developers\n\n## Architecture Design\n1. **Start Si | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_1/trace.txt | 132 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_1/trace.txt | 132 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_1/trace.txt | 132 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_1/trace.txt | 132 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_6/trace.txt | 96 | Tool: save_note({"content": "# Context Engineering for AI Agents - Key Findings\n\n## The \"Lost in the Middle\" Pheno | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_6/trace.txt | 99 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_6/trace.txt | 99 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_6/trace.txt | 99 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_8/trace.txt | 100 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Research Summary\n\n## Executive Su | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_8/trace.txt | 100 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Research Summary\n\n## Executive Su | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_8/trace.txt | 100 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Research Summary\n\n## Executive Su | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_8/trace.txt | 100 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Research Summary\n\n## Executive Su | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_8/trace.txt | 100 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Research Summary\n\n## Executive Su | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_9/trace.txt | 105 | Tool: save_note({"content": "# Key Concepts: Context Engineering for AI Agents\n\n## Definition\nContext engineering i | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_9/trace.txt | 108 | Tool: save_note({"content": "# Best Practices for Context Engineering\n\n## 1. Context Structure & Organization\n- Use | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_9/trace.txt | 111 | Tool: save_note({"content": "# Practical Recommendations for Agent Developers\n\n## Starting Simple\n1. Begin with sin | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_9/trace.txt | 111 | Tool: save_note({"content": "# Practical Recommendations for Agent Developers\n\n## Starting Simple\n1. Begin with sin | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_9/trace.txt | 111 | Tool: save_note({"content": "# Practical Recommendations for Agent Developers\n\n## Starting Simple\n1. Begin with sin | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_9/trace.txt | 118 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_9/trace.txt | 118 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_9/trace.txt | 118 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_7/trace.txt | 91 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n**Generated: Research Re | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_7/trace.txt | 91 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n**Generated: Research Re | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_7/trace.txt | 91 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n**Generated: Research Re | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 86 | Tool: save_note({"content": "# Key Concepts: Context Engineering for AI Agents\n\n## Definition\nContext engineering i | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 89 | Tool: save_note({"content": "# Techniques for Effective AI Agent Design\n\n## From Anthropic's Research\n\n### 1. Star | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 92 | Tool: save_note({"content": "# Prompt Engineering Best Practices (OpenAI & DAIR.AI)\n\n## Six Core Strategies (OpenAI) | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 102 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 102 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 102 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 102 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 102 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_5/trace.txt | 102 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_2/trace.txt | 94 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_2/trace.txt | 94 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_2/trace.txt | 94 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n## Executive Summ | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_3/trace.txt | 99 | Tool: save_note({"content": "# Context Engineering for AI Agents - Key Concepts\n\n## Definition\nContext engineering | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_3/trace.txt | 105 | Tool: save_note({"content": "# The \"Lost in the Middle\" Problem\n\n## Research Finding\nFrom Liu et al. (2023) - \"L | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_3/trace.txt | 108 | Tool: save_note({"content": "# Practical Recommendations for Agent Developers\n\n## Starting Simple\n1. **Begin with t | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_3/trace.txt | 115 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n**Date:** Researc | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_3/trace.txt | 115 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n**Date:** Researc | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_3/trace.txt | 115 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n**Date:** Researc | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_3/trace.txt | 115 | Tool: write_file({"content": "# Context Engineering for AI Agents: Comprehensive Research Summary\n\n**Date:** Researc | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_4/trace.txt | 105 | Tool: save_note({"content": "# Context Engineering for AI Agents - Key Research Findings\n\n## Core Concept\nContext e | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_4/trace.txt | 115 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Research Summary\n\n## Executive Su | CODE |
| MEDIUM⚡ | …-thinking/optimization_artifacts/iteration_4/trace.txt | 115 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Research Summary\n\n## Executive Su | CODE |
| MEDIUM⚡ | …thinking/optimization_artifacts/iteration_10/trace.txt | 117 | Tool: save_note({"content": "# Key Findings: Context Engineering for AI Agents\n\n## Core Concepts\n- Context is the m | CODE |
| MEDIUM⚡ | …thinking/optimization_artifacts/iteration_10/trace.txt | 120 | Tool: save_note({"content": "# Context Management Strategies for AI Agents\n\n## Token Efficiency\n- Every token costs | CODE |
| MEDIUM⚡ | …thinking/optimization_artifacts/iteration_10/trace.txt | 127 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
| MEDIUM⚡ | …thinking/optimization_artifacts/iteration_10/trace.txt | 127 | Tool: write_file({"content": "# Context Engineering for AI Agents: A Comprehensive Summary\n\n## Executive Summary\n\n | CODE |
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| LOW | …rleaved-thinking/reasoning_trace_optimizer/analyzer.py | 10 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 8 | CODE | |
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| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 24 | CODE | |
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 25 | CODE | |
| LOW | …/interleaved-thinking/reasoning_trace_optimizer/cli.py | 141 | CODE | |
| LOW | …/interleaved-thinking/reasoning_trace_optimizer/cli.py | 141 | CODE | |
| LOW | …/interleaved-thinking/reasoning_trace_optimizer/cli.py | 141 | CODE | |
| LOW | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 9 | CODE | |
| LOW | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 21 | CODE | |
| LOW | …-thinking/reasoning_trace_optimizer/skill_generator.py | 12 | CODE | |
| LOW | …-thinking/reasoning_trace_optimizer/skill_generator.py | 16 | CODE | |
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| LOW | …/interleaved-thinking/examples/03_full_optimization.py | 16 | CODE | |
| LOW | …es/digital-brain-skill/agents/scripts/weekly_review.py | 8 | CODE | |
| LOW | …s/digital-brain-skill/agents/scripts/stale_contacts.py | 8 | CODE | |
| LOW | …mples/long-horizon-prompt-lab/scripts/verify_report.py | 15 | CODE | |
| LOW | examples/long-horizon-prompt-lab/scripts/build_lab.py | 20 | CODE | |
| LOW | …mples/long-horizon-prompt-lab/scripts/validate_site.py | 4 | CODE | |
| LOW | examples/book-sft-pipeline/scripts/pipeline_example.py | 10 | CODE | |
| LOW | skills/memory-systems/scripts/memory_store.py | 25 | CODE | |
| LOW | …ills/advanced-evaluation/scripts/evaluation_example.py | 12 | CODE | |
| LOW | skills/context-fundamentals/scripts/context_manager.py | 40 | CODE | |
| LOW | skills/filesystem-context/scripts/filesystem_context.py | 26 | CODE | |
| LOW | skills/filesystem-context/scripts/filesystem_context.py | 29 | CODE | |
| LOW | skills/tool-design/scripts/description_generator.py | 27 | CODE | |
| LOW | skills/tool-design/scripts/description_generator.py | 29 | CODE | |
| LOW | skills/hosted-agents/scripts/sandbox_manager.py | 16 | CODE | |
| LOW | researcher/scripts/skill_health.py | 15 | CODE | |
| LOW | researcher/scripts/export_policy.py | 4 | CODE | |
| LOW | researcher/scripts/validate_schemas.py | 4 | CODE | |
| LOW | researcher/scripts/render_router_report.py | 21 | CODE | |
| LOW | researcher/scripts/validate_platform_compat.py | 15 | CODE | |
| LOW | researcher/scripts/loop_step.py | 17 | CODE | |
| LOW | researcher/scripts/loop_step.py | 26 | CODE | |
| LOW | researcher/scripts/loop_step.py | 26 | CODE | |
| LOW | researcher/scripts/check_activation_cases.py | 4 | CODE | |
| LOW | researcher/scripts/loop_common.py | 10 | CODE | |
| LOW | researcher/scripts/loop_discover.py | 9 | CODE | |
| LOW | researcher/scripts/loop_discover.py | 17 | CODE | |
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| LOW | researcher/scripts/research_loop.py | 8 | CODE | |
| LOW | researcher/scripts/migrate_legacy.py | 4 | CODE | |
| LOW | researcher/scripts/validate_repo.py | 8 | CODE | |
| LOW | researcher/scripts/loop_daily.py | 9 | CODE | |
| LOW | researcher/scripts/loop_daily.py | 15 | CODE | |
| LOW | researcher/scripts/loop_daily.py | 18 | CODE | |
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| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| HIGH | …rleaved-thinking/reasoning_trace_optimizer/analyzer.py | 261 | except ValueError: | CODE |
| HIGH | …leaved-thinking/reasoning_trace_optimizer/optimizer.py | 299 | except json.JSONDecodeError: | CODE |
| HIGH | …-thinking/reasoning_trace_optimizer/skill_generator.py | 426 | except json.JSONDecodeError: | CODE |
| HIGH | …mples/long-horizon-prompt-lab/scripts/verify_report.py | 48 | except ImportError: | CODE |
| HIGH | researcher/scripts/export_policy.py | 855 | except OSError: | CODE |
| HIGH | researcher/scripts/export_policy.py | 588 | except FileNotFoundError: | CODE |
| HIGH | researcher/scripts/loop_common.py | 113 | except OSError: | CODE |
| HIGH | researcher/scripts/loop_common.py | 119 | except OSError: | CODE |
| HIGH | researcher/scripts/loop_common.py | 140 | except OSError: | CODE |
| HIGH | researcher/scripts/loop_common.py | 63 | except FileNotFoundError: | CODE |
| HIGH | researcher/scripts/research_loop.py | 418 | except json.JSONDecodeError: | CODE |
| HIGH | researcher/scripts/build_inventory.py | 175 | except FileNotFoundError: | CODE |
| HIGH | researcher/scripts/artifact_store.py | 151 | except OSError: | CODE |
| HIGH | researcher/scripts/artifact_store.py | 366 | except OSError: | CODE |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW⚡ | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 160 | # Step 1: Capture trace | COMMENT |
| LOW⚡ | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 170 | # Step 2: Analyze trace | COMMENT |
| LOW⚡ | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 184 | # Step 3: Check convergence | COMMENT |
| LOW⚡ | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 193 | # Step 4: Optimize if continuing | COMMENT |
| LOW | examples/digital-brain-skill/examples/meeting-prep.md | 13 | ## Step 1: Agent Activates Skill | COMMENT |
| LOW | examples/digital-brain-skill/examples/meeting-prep.md | 23 | ## Step 2: Contact Lookup | COMMENT |
| LOW | examples/digital-brain-skill/examples/meeting-prep.md | 51 | ## Step 3: Interaction History | COMMENT |
| LOW | examples/digital-brain-skill/examples/meeting-prep.md | 90 | ## Step 4: Check Pending Items | COMMENT |
| LOW | examples/digital-brain-skill/examples/meeting-prep.md | 108 | ## Step 5: Generate Brief | COMMENT |
| LOW | examples/digital-brain-skill/examples/meeting-prep.md | 171 | ## Step 6: Post-Meeting Logging | COMMENT |
| LOW | …mples/digital-brain-skill/examples/content-workflow.md | 13 | ## Step 1: Agent Activates Skill | COMMENT |
| LOW | …mples/digital-brain-skill/examples/content-workflow.md | 24 | ## Step 2: Load Identity (Required) | COMMENT |
| LOW | …mples/digital-brain-skill/examples/content-workflow.md | 54 | ## Step 3: Reference Past Success | COMMENT |
| LOW | …mples/digital-brain-skill/examples/content-workflow.md | 72 | ## Step 4: Check Ideas Bank | COMMENT |
| LOW | …mples/digital-brain-skill/examples/content-workflow.md | 89 | ## Step 5: Generate Draft | COMMENT |
| LOW | …mples/digital-brain-skill/examples/content-workflow.md | 125 | ## Step 6: User Feedback & Iteration | COMMENT |
| LOW | …mples/digital-brain-skill/examples/content-workflow.md | 136 | ## Step 7: Log the Idea (If Not Publishing) | COMMENT |
| LOW | …mples/digital-brain-skill/examples/content-workflow.md | 156 | ## Step 8: Post-Publish Logging | COMMENT |
| LOW | …m-as-judge-skills/examples/full-evaluation-workflow.ts | 48 | // Step 1: Generate rubrics | COMMENT |
| LOW | …m-as-judge-skills/examples/full-evaluation-workflow.ts | 75 | // Step 2: Score the response | COMMENT |
| LOW | …m-as-judge-skills/examples/full-evaluation-workflow.ts | 102 | // Step 3: Compare with an alternative | COMMENT |
| LOW⚡ | …dge-skills/prompts/agent-system/orchestrator-prompt.md | 57 | ### Step 1: Task Analysis | COMMENT |
| LOW⚡ | …dge-skills/prompts/agent-system/orchestrator-prompt.md | 63 | ### Step 2: Agent Assignment | COMMENT |
| LOW⚡ | …dge-skills/prompts/agent-system/orchestrator-prompt.md | 68 | ### Step 3: Execution Planning | COMMENT |
| LOW⚡ | …dge-skills/prompts/agent-system/orchestrator-prompt.md | 76 | ### Step 4: Execution & Monitoring | COMMENT |
| LOW⚡ | …dge-skills/prompts/agent-system/orchestrator-prompt.md | 81 | ### Step 5: Synthesis | COMMENT |
| LOW | …kills/prompts/evaluation/pairwise-comparison-prompt.md | 64 | ### Step 1: Independent Analysis | COMMENT |
| LOW | …kills/prompts/evaluation/pairwise-comparison-prompt.md | 78 | ### Step 2: Head-to-Head Comparison | COMMENT |
| LOW | …kills/prompts/evaluation/pairwise-comparison-prompt.md | 89 | ### Step 3: Final Determination | COMMENT |
| LOW | examples/book-sft-pipeline/references/tinker.txt | 2367 | ### Step 1: Generate Training Data | COMMENT |
| LOW | examples/book-sft-pipeline/references/tinker.txt | 2381 | ### Step 2: Train the Student Model | COMMENT |
| LOW | examples/book-sft-pipeline/references/tinker.txt | 2394 | ### Step 3: Test Your Model | COMMENT |
| LOW⚡ | skills/memory-systems/references/implementation.md | 361 | # Step 1: Identify duplicate or merged facts | COMMENT |
| LOW⚡ | skills/memory-systems/references/implementation.md | 364 | # Step 2: Merge related facts | COMMENT |
| LOW⚡ | skills/memory-systems/references/implementation.md | 368 | # Step 3: Update validity periods | COMMENT |
| LOW⚡ | skills/memory-systems/references/implementation.md | 371 | # Step 4: Rebuild indexes | COMMENT |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| HIGH⚡ | skills/hosted-agents/scripts/sandbox_manager.py | 189 | "cd /workspace && npm install", | CODE |
| HIGH⚡ | skills/hosted-agents/scripts/sandbox_manager.py | 192 | "cd /workspace && npm run build", | CODE |
| HIGH⚡ | skills/hosted-agents/scripts/sandbox_manager.py | 195 | "cd /workspace && npm run dev &", | CODE |
| HIGH⚡ | skills/hosted-agents/scripts/sandbox_manager.py | 197 | "cd /workspace && npm test -- --run || true", # Run tests to warm cache | CODE |
| HIGH⚡ | skills/hosted-agents/scripts/sandbox_manager.py | 197 | "cd /workspace && npm test -- --run || true", # Run tests to warm cache | CODE |
| HIGH | researcher/scripts/build_inventory.py | 114 | Inventory values are limited to strings, integers, booleans, null, lists, | STRING |
| HIGH⚡ | researcher/scripts/tests/test_schema_contract.py | 62 | left = parse_json_strict('{"b": [true, null], "a": 1}') | CODE |
| HIGH⚡ | researcher/scripts/tests/test_schema_contract.py | 63 | right = parse_json_strict('{\n "a": 1, "b": [true,null]}') | CODE |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW | …erleaved-thinking/reasoning_trace_optimizer/capture.py | 159 | CODE | |
| LOW | …erleaved-thinking/reasoning_trace_optimizer/capture.py | 231 | CODE | |
| LOW | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 111 | CODE | |
| LOW | …leaved-thinking/reasoning_trace_optimizer/optimizer.py | 247 | CODE | |
| LOW | …leaved-thinking/reasoning_trace_optimizer/optimizer.py | 372 | CODE | |
| LOW | …-thinking/reasoning_trace_optimizer/skill_generator.py | 358 | CODE | |
| LOW | …/interleaved-thinking/examples/03_full_optimization.py | 838 | CODE | |
| LOW | …es/digital-brain-skill/agents/scripts/content_ideas.py | 14 | CODE | |
| LOW | …es/digital-brain-skill/agents/scripts/weekly_review.py | 15 | CODE | |
| LOW | …es/digital-brain-skill/agents/scripts/idea_to_draft.py | 14 | CODE | |
| LOW | …s/digital-brain-skill/agents/scripts/stale_contacts.py | 21 | CODE | |
| LOW | …s/digital-brain-skill/agents/scripts/stale_contacts.py | 49 | CODE | |
| LOW | …mples/long-horizon-prompt-lab/scripts/validate_site.py | 92 | CODE | |
| LOW | …ls/context-degradation/scripts/degradation_detector.py | 340 | CODE | |
| LOW | …s/context-compression/scripts/compression_evaluator.py | 434 | CODE | |
| LOW | …s/context-compression/scripts/compression_evaluator.py | 534 | CODE | |
| LOW | …s/context-compression/scripts/compression_evaluator.py | 542 | CODE | |
| LOW | skills/memory-systems/scripts/memory_store.py | 279 | CODE | |
| LOW | skills/project-development/scripts/pipeline_template.py | 726 | CODE | |
| LOW | skills/evaluation/scripts/evaluator.py | 182 | CODE | |
| LOW | skills/evaluation/scripts/evaluator.py | 279 | CODE | |
| LOW | skills/context-optimization/scripts/compaction.py | 104 | CODE | |
| LOW | researcher/scripts/render_router_report.py | 145 | CODE | |
| LOW | researcher/scripts/loop_step.py | 334 | CODE | |
| LOW | researcher/scripts/loop_discover.py | 81 | CODE | |
| LOW | researcher/scripts/validate_repo.py | 344 | CODE | |
| LOW | researcher/scripts/validate_repo.py | 463 | CODE | |
| LOW | researcher/scripts/validate_repo.py | 481 | CODE | |
| LOW | researcher/scripts/validate_repo.py | 489 | CODE | |
| LOW | researcher/scripts/validate_governance.py | 120 | CODE | |
| LOW | researcher/scripts/validate_governance.py | 180 | CODE | |
| LOW | researcher/scripts/skill_frontmatter.py | 73 | CODE | |
| LOW | researcher/scripts/build_inventory.py | 437 | CODE | |
| LOW | researcher/scripts/build_inventory.py | 970 | CODE | |
| LOW | researcher/scripts/compare_skill_revisions.py | 69 | CODE | |
| LOW | researcher/scripts/artifact_store.py | 320 | CODE | |
| LOW | researcher/scripts/artifact_store.py | 1047 | CODE | |
| LOW | researcher/scripts/schema_contract.py | 222 | CODE | |
| LOW | researcher/scripts/schema_contract.py | 624 | CODE | |
| LOW | researcher/scripts/tests/test_artifact_store.py | 510 | CODE | |
| LOW | researcher/scripts/tests/test_governance_policy.py | 151 | CODE |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW | …erleaved-thinking/reasoning_trace_optimizer/capture.py | 152 | except Exception as e: | CODE |
| LOW | …erleaved-thinking/reasoning_trace_optimizer/capture.py | 215 | except Exception as e: | CODE |
| LOW | …erleaved-thinking/reasoning_trace_optimizer/capture.py | 369 | except Exception as e: | CODE |
| LOW⚡ | …/interleaved-thinking/examples/03_full_optimization.py | 1001 | except Exception as e: | CODE |
| LOW | skills/multi-agent-patterns/references/frameworks.md | 400 | except Exception as e: | CODE |
| LOW | …ls/project-development/references/pipeline-patterns.md | 102 | except Exception as e: | CODE |
| LOW⚡ | …ls/project-development/references/pipeline-patterns.md | 249 | except Exception as e: | CODE |
| LOW⚡ | …ls/project-development/references/pipeline-patterns.md | 254 | except Exception as e: | CODE |
| LOW⚡ | …ls/project-development/references/pipeline-patterns.md | 259 | except Exception as e: | CODE |
| LOW | …ls/project-development/references/pipeline-patterns.md | 282 | except Exception as e: | CODE |
| LOW | …ls/project-development/references/pipeline-patterns.md | 325 | except Exception as e: | CODE |
| LOW⚡ | skills/project-development/scripts/pipeline_template.py | 435 | except Exception as e: | STRING |
| LOW⚡ | skills/project-development/scripts/pipeline_template.py | 441 | except Exception as e: | STRING |
| LOW⚡ | skills/project-development/scripts/pipeline_template.py | 447 | except Exception as e: | STRING |
| LOW⚡ | skills/project-development/scripts/pipeline_template.py | 453 | except Exception as e: | STRING |
| LOW⚡ | skills/project-development/scripts/pipeline_template.py | 459 | except Exception as e: | STRING |
| LOW | skills/project-development/scripts/pipeline_template.py | 318 | except Exception as e: | STRING |
| LOW | …ls/hosted-agents/references/infrastructure-patterns.md | 87 | except Exception as e: | CODE |
| LOW | skills/hosted-agents/scripts/sandbox_manager.py | 383 | except Exception as e: | CODE |
| LOW | researcher/scripts/export_policy.py | 674 | except Exception: | CODE |
| LOW | researcher/scripts/validate_schemas.py | 67 | except Exception: | CODE |
| LOW | researcher/scripts/loop_common.py | 60 | except Exception: | CODE |
| LOW | researcher/scripts/validate_export.py | 107 | except Exception: | CODE |
| LOW | researcher/scripts/build_inventory.py | 172 | except Exception: | CODE |
| LOW | researcher/scripts/artifact_store.py | 148 | except Exception: | CODE |
| LOW | researcher/scripts/artifact_store.py | 363 | except Exception: | CODE |
| LOW | researcher/scripts/artifact_store.py | 1148 | except Exception: | CODE |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW | …rleaved-thinking/reasoning_trace_optimizer/__init__.py | 29 | __all__ = [ | CODE |
| LOW | skills/multi-agent-patterns/scripts/coordination.py | 21 | __all__ = [ | CODE |
| LOW⚡ | …ls/context-degradation/scripts/degradation_detector.py | 31 | __all__ = [ | CODE |
| LOW | …s/context-compression/scripts/compression_evaluator.py | 43 | __all__ = [ | CODE |
| LOW | skills/memory-systems/scripts/memory_store.py | 31 | __all__ = [ | CODE |
| LOW⚡ | …ills/advanced-evaluation/scripts/evaluation_example.py | 16 | __all__ = [ | CODE |
| LOW | skills/context-fundamentals/scripts/context_manager.py | 45 | __all__ = [ | CODE |
| LOW | skills/project-development/scripts/pipeline_template.py | 40 | __all__ = [ | CODE |
| LOW | skills/evaluation/scripts/evaluator.py | 22 | __all__ = [ | CODE |
| LOW | skills/context-optimization/scripts/compaction.py | 40 | __all__ = [ | CODE |
| LOW⚡ | skills/tool-design/scripts/description_generator.py | 35 | __all__ = [ | CODE |
| LOW | skills/hosted-agents/scripts/sandbox_manager.py | 22 | __all__ = [ | CODE |
| LOW | researcher/scripts/loop_step.py | 237 | def update_run_queue_retrieval(run_dir: Path, status: str, raw_paths: list[str], notes: str) -> None: | CODE |
| LOW | researcher/scripts/research_loop.py | 110 | def set_state(run_dir: Path, state_name: str, reason: str, evidence: str = "") -> None: | CODE |
| LOW | researcher/scripts/research_loop.py | 250 | def update_queue(run_dir: Path, **updates: Any) -> None: | STRING |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| HIGH | examples/interleaved-thinking/docs/m2-1.md | 27 | export ANTHROPIC_API_KEY=${YOUR_API_KEY} | CODE |
| HIGH | …mples/interleaved-thinking/docs/interleavedthinking.md | 56 | export ANTHROPIC_API_KEY=${YOUR_API_KEY} | CODE |
| HIGH | …mples/interleaved-thinking/docs/interleavedthinking.md | 239 | export OPENAI_API_KEY=${YOUR_API_KEY} | CODE |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW⚡ | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 160 | # Step 1: Capture trace | COMMENT |
| LOW⚡ | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 170 | # Step 2: Analyze trace | COMMENT |
| LOW⚡ | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 184 | # Step 3: Check convergence | COMMENT |
| LOW⚡ | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 193 | # Step 4: Optimize if continuing | COMMENT |
| LOW | …m-as-judge-skills/examples/full-evaluation-workflow.ts | 48 | // Step 1: Generate rubrics | COMMENT |
| LOW | …m-as-judge-skills/examples/full-evaluation-workflow.ts | 75 | // Step 2: Score the response | COMMENT |
| LOW | …m-as-judge-skills/examples/full-evaluation-workflow.ts | 102 | // Step 3: Compare with an alternative | COMMENT |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW | …erleaved-thinking/reasoning_trace_optimizer/capture.py | 147 | # Check if we hit max turns without completion | COMMENT |
| LOW | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 254 | # Check if we should stop | COMMENT |
| LOW | …interleaved-thinking/reasoning_trace_optimizer/loop.py | 285 | # Check if any iteration actually produced a different prompt | COMMENT |
| LOW | …/interleaved-thinking/examples/03_full_optimization.py | 849 | # Check if any query words match the key | COMMENT |
| LOW | examples/digital-brain-skill/scripts/install.sh | 49 | # Check if already exists | COMMENT |
| LOW | skills/memory-systems/scripts/memory_store.py | 433 | # Check if overlaps with query range | COMMENT |
| LOW | skills/hosted-agents/scripts/sandbox_manager.py | 290 | # Check if image is still current | COMMENT |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW | examples/llm-as-judge-skills/README.md | 201 | // { | COMMENT |
| LOW | examples/llm-as-judge-skills/README.md | 261 | responseB: POOR_RESPONSE, | COMMENT |
| LOW | examples/llm-as-judge-skills/tools/research/read-url.md | 101 | COMMENT | |
| LOW | …mples/llm-as-judge-skills/tools/research/web-search.md | 81 | const results = await webSearch.execute({ | COMMENT |
| LOW | …mples/llm-as-judge-skills/tools/research/web-search.md | 101 | // }, | COMMENT |
| LOW | …m-as-judge-skills/tools/evaluation/pairwise-compare.md | 121 | // comparison: [ | COMMENT |
| LOW | …lm-as-judge-skills/tools/evaluation/generate-rubric.md | 101 | scale: "1-5", | COMMENT |
| LOW | …lm-as-judge-skills/tools/evaluation/generate-rubric.md | 121 | // "Deeply nested logic without explanation", | COMMENT |
| LOW | …lm-as-judge-skills/tools/evaluation/generate-rubric.md | 141 | // "Consider both naming and structure", | COMMENT |
| LOW | skills/project-development/scripts/pipeline_template.py | 341 | """ | COMMENT |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW | docs/gemini_research.md | 8 | Advanced Architectures in Agentic AI: A Comprehensive Technical Analysis of Multi-Agent Systems, Context Dynamics, and C | CODE |
| LOW | examples/digital-brain-skill/references/file-formats.md | 78 | "name": "John Doe", | CODE |
| LOW | examples/digital-brain-skill/references/file-formats.md | 81 | "company": "Acme Inc", | CODE |
| LOW | examples/digital-brain-skill/references/file-formats.md | 141 | "attendees": ["John Doe", "Jane Smith"], | CODE |
| LOW | skills/memory-systems/SKILL.md | 73 | | **Entity** | Cross-session | Entity registry + properties | Maintaining identity ("John Doe" = same person across conv | CODE |
| LOW | skills/memory-systems/scripts/memory_store.py | 211 | ("John Doe" always maps to the same node). | STRING |
| LOW | skills/memory-systems/scripts/memory_store.py | 604 | relationships=[{"target": "Acme Corp", "type": "WORKS_AT"}], | CODE |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| MEDIUM⚡ | …/interleaved-thinking/examples/03_full_optimization.py | 1016 | """Run the full optimization loop with comprehensive tools.""" | STRING |
| MEDIUM | …/interleaved-thinking/examples/03_full_optimization.py | 1047 | task = """Research the topic of "context engineering for AI agents" and create a comprehensive summary. | CODE |
| MEDIUM | examples/long-horizon-prompt-lab/ui/guide.html | 54 | <a href="#boundaries">Prompt vs harness</a> | CODE |
| MEDIUM | …ls/context-degradation/scripts/degradation_detector.py | 405 | """Perform comprehensive context health analysis. | STRING |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| HIGH | docs/blogs.md | 818 | We relied on held-out test sets to ensure we did not overfit to our “training” evaluations. These test sets revealed tha | CODE |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| MEDIUM | …ples/interleaved-thinking/examples/01_basic_capture.py | 30 | # Define a simple task | COMMENT |
| Severity | File | Line | Snippet | Context |
|---|---|---|---|---|
| LOW | …erleaved-thinking/reasoning_trace_optimizer/capture.py | 231 | CODE | |
| LOW | skills/context-optimization/scripts/compaction.py | 457 | CODE |