maziyarpanahi/openmed

23.5

Adjusted Score

23.5

Raw Score

100%

Time Factor

2026-08-26

Last Push

5.2K

Stars

Python

Language

971.5K

Lines of Code

2.8K

Files

21.3K

Pattern Hits

2026-08-29

Scan Date

0.11

HC Hit Rate

What These Metrics Mean

Adjusted Score: Primary synthetic code indicator. Raw score normalised per 1,000 lines of code and multiplied by the temporal discount factor. This is the definitive comparative metric — use it to rank repositories by AI authorship density.
Raw Score: The unmodified sum of all severity-weighted, context-multiplied pattern match scores before temporal discounting. Reflects the absolute signal strength independent of when the repository was last active.
Time Factor: The temporal discount multiplier (0–100%) applied to the raw score. Repositories last updated before ChatGPT's launch (Nov 2022) receive a 5% factor. Full signal is only assigned to repositories active in the post-adoption era (Jan 2024+).
Pattern Hits: Total count of individual pattern matches across all files and categories. A high hit count with a low score may indicate a very large codebase with isolated AI snippets; a low count with a high score indicates dense, concentrated AI signatures.
HC Hit Rate: High+Critical pattern hits per file, averaged across the repository. This orthogonal signal catches repositories where a few files are densely packed with high-severity AI tells — a strong indicator even when the normalised score appears moderate due to codebase size.
Lines of Code / Files: Total lines and files analysed. The scanner examines 94 file extensions. These denominators are used to normalise the score, enabling fair comparison between repositories of vastly different sizes.

Score History

This chart maps the temporal evolution of the adjusted synthetic code score across successive scan runs. An upward trajectory indicates ongoing incorporation of AI-generated code or expanding LLM-assisted scaffolding; a stable or declining trajectory may reflect active human refactoring, code removal, or the adoption of stricter authorship policies. The dashed secondary line (right axis) independently tracks total raw pattern hit count, which can diverge from the normalised score when codebase size changes significantly between scans.

Severity Breakdown

Classifies detected patterns by their diagnostic confidence and structural impact. CRITICAL patterns (coefficient 10) represent definitive synthetic signatures — hallucinated imports, explicit LLM attribution metadata — virtually never produced by human authors. HIGH (5) indicates strong structural tells such as cross-file repetition or cross-linguistic idioms. MEDIUM (2) covers recognisable conversational padding and AI-specific vocabulary. LOW (1) captures subtle indicators like tautological comments and generic boilerplate that require density to carry independent signal.

CRITICAL 0HIGH 298MEDIUM 877LOW 20149

Directory Score Breakdown

This horizontal bar chart decomposes the repository's raw synthetic code score by top-level directory, allowing you to pinpoint precisely which modules or components carry the highest AI authorship density. Directories with disproportionately high scores relative to their size warrant targeted manual review: concentrated AI signatures often trace back to mass-generated configuration layers, auto-ported test suites, LLM-scaffolded boilerplate classes, or entire subsystems authored under heavy copilot assistance. Use this view to prioritise your human code-review effort.

Pattern Findings

The scanner identified 21324 distinct pattern matches across 23 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a statistically significant AI authorship indicator. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.

Reading the findings table: The Severity column indicates the diagnostic confidence level (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — comment-context matches receive a ×1.5 weight because LLMs systematically over-annotate. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier as dense clusters constitute far stronger evidence of synthetic authorship than isolated hits.

Hyper-Verbose Identifiers11463 hits · 11318 pts

Severity	File	Line	Snippet	Context
LOW	packaging/standalone_manifest.py	483	def _validate_entry_collection(	CODE
LOW	openmed/__init__.py	272	def _split_prediction_at_boundaries(	CODE
LOW	openmed/traces/audit.py	461	def _merged_byte_range_length(ranges: Iterable[ByteRange]) -> int:	CODE
LOW	openmed/traces/fidelity.py	867	def _is_path_segment_sequence(items: Sequence[Any]) -> bool:	CODE
LOW	openmed/traces/fidelity.py	873	def _looks_like_path_expression(value: object) -> bool:	CODE
LOW	openmed/traces/streaming.py	114	def _validate_positive_integer(value: int, name: str) -> int:	CODE
LOW	openmed/traces/tool_calls.py	141	def redact_tool_call_with_report(	CODE
LOW⚡	openmed/traces/schemas/preference.py	557	def redact_dataset_with_report(	CODE
LOW	openmed/traces/schemas/preference.py	686	def redact_preference_dataset(	CODE
LOW	openmed/traces/schemas/preference.py	864	def _contains_source_fragment(source: str, candidate: str) -> bool:	CODE
LOW	openmed/traces/schemas/columnar.py	129	def iter_redacted_record_batches(	CODE
LOW	openmed/traces/schemas/chat.py	862	def redact_chat_record_with_report(	CODE
LOW	openmed/traces/schemas/chat.py	926	def redact_chat_messages_with_report(	CODE
LOW	openmed/core/repro_hash.py	43	def compute_canonical_payload_hash(payload: Any) -> str:	CODE
LOW	openmed/core/repro_hash.py	63	def compute_reproducibility_hash(	CODE
LOW	openmed/core/repro_hash.py	113	def compute_environment_lock_digest(lock_path: str \| Path = "uv.lock") -> str:	CODE
LOW	openmed/core/repro_hash.py	119	def compute_training_reproducibility_hash(	CODE
LOW	openmed/core/repro_hash.py	149	def build_training_provenance(	CODE
LOW	openmed/core/repro_hash.py	197	def write_training_provenance(	CODE
LOW	openmed/core/repro_hash.py	289	def canonicalize_span_records(spans: Iterable[Any]) -> list[dict[str, Any]]:	CODE
LOW	openmed/core/repro_hash.py	458	def _normalise_training_provenance(provenance: Mapping[str, Any]) -> dict[str, Any]:	CODE
LOW	openmed/core/repro_hash.py	531	def _verify_manifest_row_hash(row: Mapping[str, Any], recorded_hash: str) -> None:	CODE
LOW	openmed/core/document_stream.py	332	def _select_overlap_sentences(	CODE
LOW	openmed/core/document_stream.py	606	def deidentify_document_stream(	CODE
LOW	openmed/core/labels.py	524	def canonical_label_for_column_semantic(semantic_type: str) -> str:	CODE
LOW	openmed/core/labels.py	2035	def supports_name_boundary_refinement(label: str, lang: str = "en") -> bool:	CODE
LOW	openmed/core/quality_gates.py	301	def validate_entity_spans_strict(	CODE
LOW	openmed/core/quality_gates.py	362	def resolve_overlapping_entities(	CODE
LOW	openmed/core/quality_gates.py	426	def detect_overlapping_entities(	CODE
LOW	openmed/core/config.py	143	def _property_validation_errors(	CODE
LOW	openmed/core/audit.py	98	def _contains_sensitive_india_identifier(value: str) -> bool:	CODE
LOW	openmed/core/audit.py	208	def _safe_attribute_disclosure(value: Any) -> list[dict[str, Any]]:	CODE
LOW	openmed/core/audit.py	248	def _sanitize_release_assessment(value: Mapping[str, Any]) -> dict[str, Any]:	CODE
LOW	openmed/core/audit.py	321	def _safe_generalization_summary(value: Any) -> dict[str, Any]:	CODE
LOW	openmed/core/audit.py	396	def _sanitize_anonymization_summary(value: Mapping[str, Any]) -> dict[str, Any]:	CODE
LOW	openmed/core/audit.py	443	def _looks_like_detailed_risk_report(value: Mapping[str, Any]) -> bool:	CODE
LOW	openmed/core/audit.py	451	def _sanitize_detailed_risk_report(value: Mapping[str, Any]) -> dict[str, Any]:	CODE
LOW	openmed/core/audit.py	561	def _looks_like_kanon_enforcement(value: Mapping[str, Any]) -> bool:	CODE
LOW	openmed/core/audit.py	567	def _sanitize_kanon_enforcement(value: Mapping[str, Any]) -> dict[str, Any]:	CODE
LOW	openmed/core/audit.py	1299	def export_review_bundle_json(self) -> str:	CODE
LOW	openmed/core/export_naming.py	86	def _looks_like_raw_identifier(value: str) -> bool:	CODE
LOW	openmed/core/export_naming.py	117	def _normalise_schema_version(value: object) -> str:	CODE
LOW	openmed/core/export_naming.py	178	def _normalise_fingerprint_length(value: object) -> int:	CODE
LOW	openmed/core/export_naming.py	208	def _normalise_explicit_timestamp(value: object) -> str \| None:	CODE
LOW	openmed/core/export_naming.py	364	def _snapshot_metadata_mapping(value: Mapping[str, Any]) -> dict[str, Any]:	CODE
LOW	openmed/core/models.py	51	def _ensure_hf_auto_tokenizer() -> None:	CODE
LOW	openmed/core/models.py	700	def _resolve_attn_implementation(	CODE
LOW	openmed/core/models.py	713	def _apply_attention_pipeline_kwargs(self, pipeline_kwargs: Dict[str, Any]) -> None:	CODE
LOW	openmed/core/models.py	809	def _build_load_quantization_config(	CODE
LOW	openmed/core/models.py	841	def _build_pipeline_cache_key(	CODE
LOW	openmed/core/surrogate_vault.py	304	def _validated_name_matching_metadata(	CODE
LOW	openmed/core/surrogate_vault.py	411	def set_name_matching_metadata(self, metadata: Mapping[str, Any]) -> None:	CODE
LOW	openmed/core/surrogate_vault.py	933	def transliteration_aware_name_matching(self) -> bool:	CODE
LOW	openmed/core/surrogate_vault.py	939	def indic_name_similarity_threshold(self) -> float:	CODE
LOW	openmed/core/surrogate_vault.py	1429	def _normalized_legacy_key_for_epoch(	CODE
LOW	openmed/core/surrogate_vault.py	1441	def _exact_indian_key_for_epoch(	CODE
LOW	openmed/core/surrogate_vault.py	1553	def _indic_candidate_leaks_source(	CODE
LOW	openmed/core/baseline.py	250	def _validate_relation_golden(value: Any) -> None:	CODE
LOW	openmed/core/model_cache_policy.py	246	def _validate_nonnegative_int(value: Any, *, name: str) -> int:	CODE
LOW	openmed/core/model_cache_policy.py	941	def _is_manifest_relative_path(self, relative: str) -> bool:	CODE
11403 more matches not shown…

Unused Imports6072 hits · 4307 pts

Severity	File	Line	Context
LOW	packaging/standalone_manifest.py	18	CODE
LOW	openmed/__init__.py	3	CODE
LOW	openmed/__init__.py	11	CODE
LOW	openmed/__init__.py	14	CODE
LOW	openmed/__init__.py	14	CODE
LOW	openmed/__init__.py	14	CODE
LOW	openmed/__init__.py	14	CODE
LOW	openmed/__init__.py	15	CODE
LOW	openmed/__init__.py	16	CODE
LOW	openmed/__init__.py	16	CODE
LOW	openmed/__init__.py	16	CODE
LOW	openmed/__init__.py	21	CODE
LOW	openmed/__init__.py	21	CODE
LOW	openmed/__init__.py	21	CODE
LOW	openmed/__init__.py	26	CODE
LOW	openmed/__init__.py	26	CODE
LOW	openmed/__init__.py	26	CODE
LOW	openmed/__init__.py	26	CODE
LOW	openmed/__init__.py	26	CODE
LOW	openmed/__init__.py	34	CODE
LOW	openmed/aio.py	9	CODE
LOW	openmed/aio.py	30	CODE
LOW	openmed/aio.py	32	CODE
LOW	openmed/aio.py	35	CODE
LOW	openmed/traces/audit.py	10	CODE
LOW	openmed/traces/discovery.py	8	CODE
LOW	openmed/traces/transaction.py	10	CODE
LOW	openmed/traces/__init__.py	3	CODE
LOW	openmed/traces/__init__.py	3	CODE
LOW	openmed/traces/__init__.py	3	CODE
LOW	openmed/traces/__init__.py	3	CODE
LOW	openmed/traces/__init__.py	3	CODE
LOW	openmed/traces/__init__.py	3	CODE
LOW	openmed/traces/__init__.py	3	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	12	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
LOW	openmed/traces/__init__.py	29	CODE
6012 more matches not shown…

Decorative Section Separators823 hits · 2944 pts

Severity	File	Line	Snippet	Context
MEDIUM	openmed/core/labels.py	25	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	27	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	549	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	551	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	1376	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	1378	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/config.py	806	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/config.py	808	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/review_workflow.py	567	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/review_workflow.py	569	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	72	# ============================================================================	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	74	# ============================================================================	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	540	# ============================================================================	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	542	# ============================================================================	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	487	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	489	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	4399	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	4401	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	11589	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	11591	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	61	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	63	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	204	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	206	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	407	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	409	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	786	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	788	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3054	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3056	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3641	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3643	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3790	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3792	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	4345	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	4347	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	4500	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	4502	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7489	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7491	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7692	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7694	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7717	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7719	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7781	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7783	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7843	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7845	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7907	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7909	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7971	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	7973	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	8044	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	8046	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	8108	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	8110	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	9378	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	9380	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	9708	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	9710	# ---------------------------------------------------------------------------	COMMENT
763 more matches not shown…

Docstring Block Structure247 hits · 1235 pts

Severity	File	Line	Snippet	Context
HIGH	openmed/traces/transaction.py	145	Redact one local text file with an atomic in-place commit. Args: path: Existing regular file to replace.	STRING
HIGH	openmed/traces/fidelity.py	472	Verify structural fidelity after a trace transformation. Args: original: The pre-redaction JSON-like trace.	STRING
HIGH	openmed/traces/parallel.py	348	Partition trace paths into bounded shards without reordering them. Args: files: An iterable of local paths,	STRING
HIGH	openmed/traces/tool_calls.py	103	Return a structure-preserving redaction of one tool-call payload. Args: tool_call: JSON-compatible tool-cal	STRING
HIGH	openmed/traces/schemas/columnar.py	70	Redact configured text leaves in one Arrow record batch. ``text_columns`` contains top-level column names or dotted	STRING
HIGH	openmed/core/config.py	560	Create config from a named profile. Args: profile_name: Name of a built-in or custom profile.	STRING
HIGH	openmed/core/config.py	830	Get the settings for a specific profile. Args: profile_name: Name of the profile. Returns: Dic	STRING
HIGH	openmed/core/config.py	880	Delete a custom profile. Args: profile_name: Name of the profile to delete. Returns: True if d	STRING
HIGH	openmed/core/models.py	175	Load a TokenClassification model and tokenizer. Args: model_name: Name of the model to load. Can be	STRING
HIGH	openmed/core/config_provenance.py	213	Resolve configuration sources and produce value-free provenance. The deterministic precedence order is ``default <	STRING
HIGH	openmed/core/locale_formats.py	686	Return date order and number separators for an OpenMed language code. Args: lang: OpenMed ISO 639-1 languag	STRING
HIGH	openmed/core/hf_hub.py	127	Resolve a registry alias or bare name to a fully-qualified Hub repo id. A value that already looks like a Hub id (c	STRING
HIGH	openmed/core/hf_hub.py	171	Pre-download an OpenMed model snapshot and return its local path. The friendly name_or_alias is resolved to a Hub	STRING
HIGH	openmed/core/hf_hub.py	706	Return the OpenMed model repos present in the local Hugging Face cache. The scan is read-only and never touches the	STRING
HIGH	openmed/core/hf_hub.py	768	Return the current Hub snapshot size for one model in decimal MB. This is the only size helper that performs a netw	STRING
HIGH	openmed/core/hf_hub.py	809	Delete a single OpenMed repo from the local Hugging Face cache. Args: name: Registry key, repo id, or bare	STRING
HIGH	openmed/core/local_identifiers.py	130	Return username entities found in absolute local paths. Args: text: Text containing logs, traces, or other	STRING
HIGH	openmed/core/budget.py	229	Validate and return a :class:`RequestBudget` or ``None``. Accepts an existing :class:`RequestBudget`, ``None`` (unl	STRING
HIGH	openmed/core/review_workflow.py	339	Build a review queue from an extraction or de-identification result. Surfaces the spans a human should look at befo	STRING
HIGH	openmed/core/review_workflow.py	455	Capture a reviewer's decision about a review item as a feedback record. Args: item: The :class:`ReviewItem`	STRING
HIGH	openmed/core/review_workflow.py	543	Append one feedback record to a local JSONL file. The file is created if it does not exist. Each call appends a sin	STRING
HIGH	openmed/core/telemetry.py	90	Parse an explicit telemetry opt-in value. Args: raw_value: Environment or configuration value. ``None``, an	STRING
HIGH	openmed/core/telemetry.py	126	Return the no-PHI subset of candidate stage attributes. String values are never accepted generically. Stage names m	STRING
HIGH	openmed/core/text_normalize.py	85	Translate a normalized half-open span to source offsets. Args: start: Inclusive normalized code-poi	STRING
HIGH	openmed/core/script_detect.py	1669	Decode untrusted multilingual bytes using an explicit codec allow-list. Codec names are normalized through a static	STRING
HIGH	openmed/core/capabilities.py	321	Return an importless :class:`BackendStatus` for a single backend. Args: name: A registered capability key (	STRING
HIGH	openmed/core/language_pack.py	223	Register and return a language pack. Args: pack: Fully validated language-pack declaration.	STRING
HIGH	openmed/core/language_pack.py	275	Return the pack registered for ``code``. Args: code: Lowercase ISO 639-1 language code. Re	STRING
HIGH	openmed/core/path_portability.py	243	Audit local resource paths without reading the filesystem. Args: paths: An iterable of path strings or path	STRING
HIGH	openmed/core/pii_i18n.py	1682	Return the ISO 7064 MOD 11-2 check character for a 17-digit body. Args: body: The first 17 digits of a Chin	STRING
HIGH	openmed/core/pii_i18n.py	5015	Return the ISO 7064 MOD 31-3 check character for a USCC body. Args: body17: Seventeen characters from :data	STRING
HIGH	openmed/core/pii_i18n.py	11622	Return combined PII patterns for the given language. English patterns (email, URL, IP, etc.) are universal and alwa	STRING
HIGH	openmed/core/rtl_render.py	252	Render de-identified ``text`` with bidi-safe masks. For a right-to-left or mixed-script document, each replacement	STRING
HIGH	openmed/core/rtl_render.py	338	Wrap a single mask/surrogate token in ``FSI ... PDI`` isolates. A convenience for callers that build redacted outpu	STRING
HIGH	openmed/core/rtl_render.py	369	Remove bidi isolate/embedding/override controls and directional marks. For source text without pre-existing bidi co	STRING
HIGH	openmed/core/pii.py	1396	Extract PII entities from text with intelligent entity merging. Uses token classification models to detect personal	STRING
HIGH	openmed/core/pii.py	2635	De-identify text by detecting and redacting PII with intelligent merging. Implements multiple de-identification str	STRING
HIGH	openmed/core/pii.py	3656	Re-identify text using stored mapping. Restores original PII from de-identified text using the mapping created	STRING
HIGH	openmed/core/decoding/viterbi.py	301	Decode token-class indices via constrained BIOES Viterbi. Args: token_logprobs: One inner list of class log	STRING
HIGH	openmed/core/anonymizer/format_preserve.py	159	Render an Aadhaar value in UIDAI's masked ``XXXX XXXX NNNN`` form. The first eight digits are never returned. Alrea	STRING
HIGH	openmed/core/anonymizer/engine.py	312	Apply a dedicated Aadhaar anonymization strategy. Args: original: A checksum-valid Aadhaar value.	STRING
HIGH	openmed/ner/indexing.py	99	Discover models located under ``models_dir`` and return a structured index. Args: models_dir: Root director	STRING
HIGH	openmed/onnx/maple_export.py	182	Download the immutable BF16 Maple snapshot and bind it to a receipt. Args: destination: New or empty local	STRING
HIGH	openmed/onnx/tensorrt_export.py	331	Build and optionally certify a TensorRT token-classification engine. INT8 builds consume the shared deterministic s	STRING
HIGH	openmed/onnx/tensorrt_export.py	648	Verify a serialized engine against a pinned SHA-256 digest. Args: engine_path: Serialized engine to hash.	STRING
HIGH	openmed/onnx/tensorrt_session.py	75	Run one batch and return the engine's logits as a NumPy array. Args: input_ids: Rank-two token ID b	STRING
HIGH	openmed/processing/zh_normalize.py	585	Parse an everyday or financial-form Chinese numeral as an integer. Digit-only forms such as ``二〇二四`` are read posit	STRING
HIGH	openmed/processing/zh_segmentation.py	238	Create a Chinese segmenter without importing unselected backends. Args: backend: One of ``"jieba"``, ``"pku	STRING
HIGH	openmed/processing/zh_segmentation.py	299	Load a jieba-format medical dictionary through bounded validation. Args: path: Plain UTF-8 dictionary or si	STRING
HIGH	openmed/processing/zh_segmentation.py	464	Run the shared exact-offset conformance suite against one backend. Every case is checked independently so a report	STRING
HIGH	openmed/processing/text.py	49	Return bounded UTF-8 text safe to pass to PII normalization. The check runs before normalization allocates offset m	STRING
HIGH	openmed/processing/text.py	1240	Drop records fully contained by boilerplate/copy-forward annotations. Suppression is opt-in and conservative. Recor	STRING
HIGH	openmed/processing/zh_pinyin.py	128	Romanize Chinese text after word segmentation. Args: text: Source text to romanize. style: ``NORMAL	STRING
HIGH	openmed/plugins/conformance.py	197	Require plugin components to pass the offline conformance kit. Args: components: A component, component ite	STRING
HIGH	openmed/plugins/quarantine.py	214	Evaluate injected plugin metadata without loading plugin code. Args: metadata: One metadata mapping or an i	STRING
HIGH	openmed/training/directid_quantization.py	144	Export and evaluate DirectID Tiny runtime artifacts locally. Args: candidate: Path-free candidate mapping e	STRING
HIGH	openmed/training/recipe.py	695	Return the immutable label, head, runtime, recipe, and tier contract. Args: family: Canonical clinical fami	STRING
HIGH	openmed/training/recipe.py	714	Hash the base recipe together with a family's label/head contract. Args: family: Canonical clinical family	STRING
HIGH	openmed/training/recipe.py	758	Build release artifacts only from a completed, signed external run. This function never trains a model, reads corpu	STRING
HIGH	openmed/training/directid_distill.py	224	Execute a local DirectID Mode-A backend and emit hash-only evidence. Args: dataset_evidence: Aggregate evid	STRING
187 more matches not shown…

Fake / Example Data667 hits · 764 pts

Severity	File	Line	Snippet	Context
LOW	README.hi.md	451	[('NAME', 'John Doe'), ('DATE', '01/15/1970'), ('SSN', '123-45-6789')]	CODE
LOW	CHANGELOG.md	2275	- `method="replace"` outputs no longer come from the prior hardcoded list (`["Jane Smith", "John Doe", "Alex Johnson	CODE
LOW	CHANGELOG.md	2524	- Expanded locale fake-data dictionaries with `FIRST_NAME`, `LAST_NAME`, and `ZIPCODE` values across supported languag	CODE
LOW	README.md	458	[('NAME', 'John Doe'), ('DATE', '01/15/1970'), ('SSN', '123-45-6789')]	CODE
LOW	README.zh-CN.md	451	[('NAME', 'John Doe'), ('DATE', '01/15/1970'), ('SSN', '123-45-6789')]	CODE
LOW	openmed/core/secrets.py	283	"placeholder",	CODE
LOW⚡	openmed/core/pii_i18n.py	10611	"NAME": ["Jane Smith", "John Doe", "Alex Johnson", "Sam Taylor"],	CODE
LOW⚡	openmed/core/pii_i18n.py	10614	"EMAIL": ["patient@example.com", "contact@example.org"],	CODE
LOW⚡	openmed/core/pii_i18n.py	10615	"PHONE": ["555-0123", "555-0456", "555-0789"],	CODE
LOW⚡	openmed/core/pii_i18n.py	10617	"STREET_ADDRESS": ["123 Main St", "456 Oak Ave"],	CODE
LOW	openmed/core/pii_i18n.py	10599	"EMAIL": ["pasiënt@example.co.za", "kontak@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	10739	"EMAIL": ["patient@example.in", "sampark@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	10776	"EMAIL": ["patient@example.in", "sampark@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	10803	"EMAIL": ["takami@example.et", "contact@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	10833	"EMAIL": ["patient@example.eg", "contact@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	10870	"EMAIL": ["patient@example.pk", "contact@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	10909	"EMAIL": ["patient@example.co.il", "contact@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	10946	"EMAIL": ["patient@example.jp", "renraku@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11023	"EMAIL": ["pasyente@example.ph", "kontak@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11071	"EMAIL": ["isiguli@example.co.za", "xhumana@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11091	"EMAIL": ["isigulane@example.co.za", "qhagamshelana@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11106	"EMAIL": ["patient@example.se", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11121	"EMAIL": ["patient@example.dk", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11136	"EMAIL": ["pasient@example.no", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11156	"EMAIL": ["benhnhan@example.vn", "lienhe@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11179	"EMAIL": ["patient@example.th", "contact@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11197	"EMAIL": ["pacients@example.lv", "kontakts@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11217	"EMAIL": ["pacient@example.sk", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11283	"EMAIL": ["pacient@example.ru", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11298	"EMAIL": ["potilas@example.fi", "yhteys@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11313	"EMAIL": ["patsient@example.bg", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11328	"EMAIL": ["pacijent@example.hr", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11343	"EMAIL": ["pacijent@example.rs", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11358	"EMAIL": ["beteg@example.hu", "kapcsolat@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11373	"EMAIL": ["patsient@example.ee", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11388	"EMAIL": ["patsiient@example.ua", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11403	"EMAIL": ["pacient@example.cz", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11423	"EMAIL": ["asthenis@example.gr", "epikoinonia@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11443	"EMAIL": ["majiyyaci@example.ng", "tuntuɓa@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11463	"EMAIL": ["onyeoria@example.ng", "uloogwu@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11483	"EMAIL": ["alaisan@example.ng", "iwosan@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	11498	"EMAIL": ["patient@example.cn", "contact@example.org"],	CODE
LOW	openmed/core/pii.py	3125	# Canonical labels that don't have a fake-data key fall through to the	COMMENT
LOW⚡	openmed/core/pii.py	3179	fake_data = LANGUAGE_FAKE_DATA.get(lang, LANGUAGE_FAKE_DATA["en"])	CODE
LOW⚡	openmed/core/pii.py	3182	if key in fake_data:	CODE
LOW⚡	openmed/core/pii.py	3183	return random.choice(fake_data[key])	CODE
LOW	openmed/core/pii.py	18	... {"[NAME]": "Casey Example", "[PHONE]": "555-0100"},	STRING
LOW⚡	openmed/core/anonymizer/format_preserve.py	106	def preserve_email_pattern(original: str, fake_email: str) -> str:	CODE
LOW⚡	openmed/core/anonymizer/format_preserve.py	107	"""Use ``fake_email``'s local part with ``original``'s domain.	STRING
LOW⚡	openmed/core/anonymizer/format_preserve.py	111	the local part. Falls back to ``fake_email`` verbatim if either side	STRING
LOW⚡	openmed/core/anonymizer/format_preserve.py	114	if "@" not in original or "@" not in fake_email:	CODE
LOW⚡	openmed/core/anonymizer/format_preserve.py	115	return fake_email	CODE
LOW⚡	openmed/core/anonymizer/format_preserve.py	116	fake_local = fake_email.split("@", 1)[0]	CODE
LOW	openmed/core/anonymizer/engine.py	73	consistency (so "John Doe" appearing twice gets one surrogate).	STRING
LOW	openmed/processing/display.py	361	>>> "PERSON" in html and "John Doe" in html	STRING
LOW	openmed/interop/retrieval/redacted_index.py	55	"placeholder": self.placeholder,	CODE
LOW	openmed/interop/retrieval/redacted_index.py	67	"placeholder",	CODE
LOW	openmed/interop/retrieval/redacted_index.py	75	placeholder=str(payload["placeholder"]),	CODE
LOW	openmed/eval/determinism.py	257	"casey.example@example.org",	CODE
LOW	openmed/mlx/inference.py	195	"word": "John Doe", "start": 8, "end": 16}, ...]	STRING
607 more matches not shown…

Modern Structural Boilerplate726 hits · 726 pts

Severity	File	Line	Snippet	Context
LOW	packaging/standalone_manifest.py	892	__all__ = [	CODE
LOW	openmed/__init__.py	260	logger = logging.getLogger(__name__)	CODE
LOW	openmed/__init__.py	853	__all__ = [	CODE
LOW	openmed/aio.py	310	__all__ = ["aextract_pii", "adeidentify", "aanalyze_text", "abatch"]	CODE
LOW	openmed/traces/audit.py	1080	__all__ = [	CODE
LOW	openmed/traces/discovery.py	374	__all__ = [	CODE
LOW	openmed/traces/transaction.py	29	__all__ = [	CODE
LOW	openmed/traces/__init__.py	72	__all__ = [	CODE
LOW	openmed/traces/jsonl.py	51	__all__ = [	CODE
LOW	openmed/traces/jsonl.py	463	def _set_path(record: dict[str, Any], path: JsonPath, value: str) -> None:	CODE
LOW	openmed/traces/fidelity.py	1139	__all__ = [	CODE
LOW	openmed/traces/streaming.py	1106	__all__ = [	CODE
LOW	openmed/traces/parallel.py	689	__all__ = [	CODE
LOW	openmed/traces/tool_calls.py	543	__all__ = [	CODE
LOW	openmed/traces/schemas/preference.py	1002	__all__ = [	CODE
LOW	openmed/traces/schemas/columnar.py	23	__all__ = [	CODE
LOW	openmed/traces/schemas/registry.py	1026	__all__ = [	CODE
LOW	openmed/traces/schemas/__init__.py	21	__all__ = [	CODE
LOW	openmed/traces/schemas/chat.py	965	__all__ = [	CODE
LOW	openmed/core/safety_sweep.py	271	__all__ = [	CODE
LOW	openmed/core/repro_hash.py	589	__all__ = [	CODE
LOW	openmed/core/document_stream.py	38	__all__ = [	CODE
LOW	openmed/core/labels.py	2100	__all__ = [	CODE
LOW	openmed/core/quality_gates.py	23	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/quality_gates.py	189	def _set_span_valid(entity: Any, valid: bool) -> None:	CODE
LOW	openmed/core/config.py	688	def set_config(config: OpenMedConfig) -> None:	CODE
LOW	openmed/core/audit.py	1355	__all__ = [	CODE
LOW	openmed/core/export_naming.py	573	__all__ = [	CODE
LOW	openmed/core/lang_id_codemix.py	357	__all__ = [	CODE
LOW	openmed/core/models.py	12	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/config_provenance.py	535	__all__ = [	CODE
LOW	openmed/core/surrogate_vault.py	391	def set_epoch_manager(self, epoch_manager: _EpochManager) -> None:	CODE
LOW	openmed/core/surrogate_vault.py	411	def set_name_matching_metadata(self, metadata: Mapping[str, Any]) -> None:	CODE
LOW	openmed/core/surrogate_vault.py	1881	__all__ = [	CODE
LOW	openmed/core/baseline.py	320	__all__ = [	CODE
LOW	openmed/core/model_cache_policy.py	31	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/model_cache_policy.py	1045	__all__ = [	CODE
LOW	openmed/core/manifest.py	594	__all__ = [	CODE
LOW	openmed/core/thresholds.py	580	__all__ = [	CODE
LOW	openmed/core/locale_formats.py	960	__all__ = [	CODE
LOW	openmed/core/date_shift.py	92	__all__ = [	CODE
LOW	openmed/core/hf_hub.py	38	__all__ = [	CODE
LOW	openmed/core/hf_hub.py	649	def update_transfer(self, byte_count: int \| float \| None = 1) -> None:	CODE
LOW⚡	openmed/core/hf_hub.py	668	def set_description(self, args: Any, *kwargs: Any) -> None:	CODE
LOW⚡	openmed/core/hf_hub.py	671	def set_postfix_str(self, args: Any, *kwargs: Any) -> None:	CODE
LOW⚡	openmed/core/hf_hub.py	674	def set_transfer_postfix_str(self, args: Any, *kwargs: Any) -> None:	CODE
LOW	openmed/core/local_identifiers.py	200	__all__ = [	CODE
LOW	openmed/core/budget.py	51	__all__ = [	CODE
LOW	openmed/core/review_workflow.py	69	__all__ = [	CODE
LOW	openmed/core/language_pack_catalog.py	675	__all__ = [	CODE
LOW	openmed/core/language_pack_coherence.py	326	__all__ = [	CODE
LOW	openmed/core/arbitration.py	491	__all__ = [	CODE
LOW	openmed/core/policy.py	961	__all__ = [	CODE
LOW	openmed/core/__init__.py	161	__all__ = [	CODE
LOW⚡	openmed/core/telemetry.py	232	def _set_attributes(self, attributes: Mapping[str, Any]) -> None:	CODE
LOW⚡	openmed/core/telemetry.py	238	def set_span_count(self, count: int) -> None:	CODE
LOW⚡	openmed/core/telemetry.py	243	def set_entity_count(self, count: int) -> None:	CODE
LOW⚡	openmed/core/telemetry.py	248	def set_labels(self, labels: Sequence[str]) -> None:	CODE
LOW⚡	openmed/core/telemetry.py	252	def set_input_length(self, length: int) -> None:	CODE
LOW⚡	openmed/core/telemetry.py	262	def set_redacted_length(self, length: int) -> None:	CODE
666 more matches not shown…

Excessive Try-Catch Wrapping558 hits · 586 pts

Severity	File	Line	Snippet	Context
LOW	openmed/__init__.py	565	except Exception:	CODE
LOW	openmed/__init__.py	570	except Exception:	CODE
LOW	openmed/__init__.py	802	except Exception as exc: # pragma: no cover	CODE
LOW	openmed/aio.py	264	except Exception:	CODE
LOW	openmed/traces/audit.py	62	except Exception: # noqa: BLE001 - untrusted metadata must fail closed	CODE
LOW	openmed/traces/audit.py	69	except Exception: # noqa: BLE001 - untrusted metadata must fail closed	CODE
LOW	openmed/traces/audit.py	119	except Exception: # noqa: BLE001 - input may expose PHI in errors	CODE
LOW	openmed/traces/audit.py	126	except Exception: # noqa: BLE001 - input may expose PHI in errors	CODE
LOW	openmed/traces/audit.py	141	except Exception: # noqa: BLE001 - mapping errors may contain PHI	CODE
LOW	openmed/traces/audit.py	171	except Exception: # noqa: BLE001 - untrusted metadata must fail closed	CODE
LOW	openmed/traces/audit.py	507	except Exception: # noqa: BLE001 - report inputs may contain PHI	CODE
MEDIUM	openmed/traces/audit.py	493	def __post_init__(self) -> None:	CODE
LOW	openmed/traces/transaction.py	330	except Exception: # noqa: BLE001 - path-like errors may contain PHI	CODE
LOW	openmed/traces/transaction.py	341	except Exception: # noqa: BLE001 - callback text may contain PHI	CODE
LOW	openmed/traces/jsonl.py	300	except Exception: # noqa: BLE001 - path errors may contain PHI	CODE
LOW	openmed/traces/jsonl.py	318	except Exception: # noqa: BLE001 - I/O errors may contain PHI paths	CODE
LOW	openmed/traces/jsonl.py	331	except Exception: # noqa: BLE001 - stream errors may contain PHI	CODE
LOW	openmed/traces/jsonl.py	480	except Exception:	CODE
LOW	openmed/traces/jsonl.py	558	except Exception: # noqa: BLE001 - path errors may contain PHI	CODE
LOW	openmed/traces/jsonl.py	575	except Exception: # noqa: BLE001 - path errors may contain PHI	CODE
LOW	openmed/traces/jsonl.py	592	except Exception: # noqa: BLE001 - path errors may contain PHI	CODE
LOW	openmed/traces/jsonl.py	607	except Exception: # noqa: BLE001 - stream errors may contain PHI	CODE
LOW	openmed/traces/jsonl.py	614	except Exception: # noqa: BLE001 - stream errors may contain PHI	CODE
LOW	openmed/traces/fidelity.py	250	except Exception: # noqa: BLE001 - report inputs may contain PHI	CODE
LOW	openmed/traces/fidelity.py	524	except Exception: # noqa: BLE001 - trace errors may contain sensitive values	CODE
LOW	openmed/traces/fidelity.py	810	except Exception: # noqa: BLE001 - configuration may contain PHI	CODE
LOW	openmed/traces/fidelity.py	833	except Exception: # noqa: BLE001 - configuration may contain PHI	CODE
LOW	openmed/traces/fidelity.py	848	except Exception: # noqa: BLE001 - configuration may contain PHI	CODE
LOW	openmed/traces/fidelity.py	855	except Exception: # noqa: BLE001 - configuration may contain PHI	CODE
LOW	openmed/traces/fidelity.py	1025	except Exception:	CODE
LOW	openmed/traces/fidelity.py	1036	except Exception:	CODE
LOW	openmed/traces/fidelity.py	1047	except Exception:	CODE
LOW	openmed/traces/fidelity.py	1103	except Exception: # noqa: BLE001 - direct report input may contain PHI	CODE
LOW	openmed/traces/fidelity.py	1121	except Exception: # noqa: BLE001 - trace metadata may contain PHI	CODE
MEDIUM	openmed/traces/fidelity.py	238	def __post_init__(self) -> None:	CODE
LOW⚡	openmed/traces/streaming.py	477	except Exception:	CODE
LOW⚡	openmed/traces/streaming.py	487	except Exception:	CODE
LOW⚡	openmed/traces/streaming.py	494	except Exception:	CODE
LOW⚡	openmed/traces/streaming.py	832	except Exception:	CODE
LOW⚡	openmed/traces/streaming.py	838	except Exception:	CODE
LOW⚡	openmed/traces/streaming.py	846	except Exception:	CODE
LOW⚡	openmed/traces/streaming.py	854	except Exception:	CODE
LOW	openmed/traces/streaming.py	577	except Exception:	CODE
LOW	openmed/traces/streaming.py	600	except Exception:	CODE
LOW	openmed/traces/streaming.py	623	except Exception:	CODE
LOW	openmed/traces/streaming.py	635	except Exception:	CODE
LOW	openmed/traces/streaming.py	662	except Exception:	CODE
LOW	openmed/traces/streaming.py	774	except Exception:	CODE
LOW	openmed/traces/parallel.py	102	except Exception:	CODE
LOW	openmed/traces/parallel.py	110	except Exception: # pragma: no cover - hostile exception metaclass	CODE
LOW	openmed/traces/parallel.py	126	except Exception:	CODE
LOW	openmed/traces/parallel.py	154	except Exception:	CODE
LOW	openmed/traces/parallel.py	368	except Exception:	CODE
LOW	openmed/traces/parallel.py	376	except Exception:	CODE
LOW	openmed/traces/parallel.py	400	except Exception:	CODE
LOW	openmed/traces/parallel.py	412	except Exception:	CODE
LOW	openmed/traces/parallel.py	428	except Exception as exc:	CODE
LOW	openmed/traces/parallel.py	492	except Exception:	CODE
LOW	openmed/traces/parallel.py	506	except Exception:	CODE
LOW	openmed/traces/parallel.py	513	except Exception:	CODE
498 more matches not shown…

Deep Nesting480 hits · 452 pts

Severity	File	Line	Context
LOW	openmed/__init__.py	272	CODE
LOW	openmed/__init__.py	399	CODE
LOW	openmed/__init__.py	711	CODE
LOW	openmed/traces/audit.py	682	CODE
LOW	openmed/traces/audit.py	983	CODE
LOW	openmed/traces/discovery.py	290	CODE
LOW	openmed/traces/discovery.py	335	CODE
LOW	openmed/traces/jsonl.py	413	CODE
LOW	openmed/traces/jsonl.py	550	CODE
LOW	openmed/traces/fidelity.py	800	CODE
LOW	openmed/traces/fidelity.py	1077	CODE
LOW	openmed/traces/streaming.py	1059	CODE
LOW	openmed/traces/streaming.py	462	CODE
LOW	openmed/traces/parallel.py	478	CODE
LOW	openmed/traces/parallel.py	559	CODE
LOW	openmed/traces/tool_calls.py	237	CODE
LOW	openmed/traces/tool_calls.py	480	CODE
LOW	openmed/traces/schemas/preference.py	437	CODE
LOW	openmed/traces/schemas/preference.py	588	CODE
LOW	openmed/traces/schemas/columnar.py	248	CODE
LOW	openmed/traces/schemas/registry.py	137	CODE
LOW	openmed/traces/schemas/registry.py	157	CODE
LOW	openmed/traces/schemas/chat.py	213	CODE
LOW	openmed/core/result_cache.py	60	CODE
LOW	openmed/core/document_stream.py	433	CODE
LOW	openmed/core/config.py	559	CODE
LOW	openmed/core/audit.py	208	CODE
LOW	openmed/core/audit.py	647	CODE
LOW	openmed/core/export_naming.py	433	CODE
LOW	openmed/core/surrogate_vault.py	1107	CODE
LOW	openmed/core/model_cache_policy.py	279	CODE
LOW	openmed/core/model_cache_policy.py	583	CODE
LOW	openmed/core/model_cache_policy.py	717	CODE
LOW	openmed/core/policy.py	571	CODE
LOW	openmed/core/model_integrity.py	327	CODE
LOW	openmed/core/text_normalize.py	155	CODE
LOW	openmed/core/pii_entity_merger.py	602	CODE
LOW	openmed/core/pii_entity_merger.py	716	CODE
LOW	openmed/core/pii_entity_merger.py	780	CODE
LOW	openmed/core/custom_recognizer.py	819	CODE
LOW	openmed/core/script_detect.py	797	CODE
LOW	openmed/core/script_detect.py	857	CODE
LOW	openmed/core/registry_service.py	98	CODE
LOW	openmed/core/registry_service.py	471	CODE
LOW	openmed/core/registry_service.py	513	CODE
LOW	openmed/core/policy_lint.py	252	CODE
LOW	openmed/core/attestation.py	491	CODE
LOW	openmed/core/hf_publish.py	167	CODE
LOW	openmed/core/africa_context.py	139	CODE
LOW	openmed/core/indic_name_match.py	331	CODE
LOW	openmed/core/indic_name_match.py	423	CODE
LOW	openmed/core/indic_name_match.py	563	CODE
LOW	openmed/core/pii_i18n.py	2298	CODE
LOW	openmed/core/pii_i18n.py	2806	CODE
LOW	openmed/core/manifest_schema.py	228	CODE
LOW	openmed/core/manifest_schema.py	550	CODE
LOW	openmed/core/manifest_schema.py	925	CODE
LOW	openmed/core/pii.py	479	CODE
LOW	openmed/core/pii.py	2431	CODE
LOW	openmed/core/pii.py	2890	CODE
420 more matches not shown…

Cross-File Repetition32 hits · 160 pts

Severity	File	Snippet	Context
HIGH	openmed/traces/transaction.py	copy a string into a base ``str`` without calling subclass hooks.	STRING
HIGH	openmed/traces/fidelity.py	copy a string into a base ``str`` without calling subclass hooks.	STRING
HIGH	openmed/traces/parallel.py	copy a string into a base ``str`` without calling subclass hooks.	STRING
HIGH	openmed/traces/schemas/preference.py	copy a string into a base ``str`` without calling subclass hooks.	STRING
HIGH	openmed/traces/schemas/columnar.py	copy a string into a base ``str`` without calling subclass hooks.	STRING
HIGH	openmed/traces/schemas/registry.py	copy a string into a base ``str`` without calling subclass hooks.	STRING
HIGH	openmed/traces/schemas/chat.py	copy a string into a base ``str`` without calling subclass hooks.	STRING
HIGH	scripts/skills/build_packs.py	copy a string into a base ``str`` without calling subclass hooks.	STRING
HIGH	openmed/processing/advanced_ner.py	return the character-offset identity for this span.	STRING
HIGH	openmed/clinical/decision_support.py	return the character-offset identity for this span.	STRING
HIGH	openmed/clinical/relations/candidate.py	return the character-offset identity for this span.	STRING
HIGH	openmed/interop/elasticsearch.py	internal marker for a rejected untrusted input boundary.	STRING
HIGH	openmed/interop/opensearch.py	internal marker for a rejected untrusted input boundary.	STRING
HIGH	openmed/interop/beam.py	internal marker for a rejected untrusted input boundary.	STRING
HIGH	openmed/interop/llamaindex.py	runtime options forwarded to openmed's de-identification engine.	STRING
HIGH	openmed/interop/langchain.py	runtime options forwarded to openmed's de-identification engine.	STRING
HIGH	openmed/interop/duckdb_udf.py	runtime options forwarded to openmed's de-identification engine.	STRING
HIGH	openmed/interop/llamaindex.py	return keyword arguments for ``openmed.core.pii.deidentify``.	STRING
HIGH	openmed/interop/langchain.py	return keyword arguments for ``openmed.core.pii.deidentify``.	STRING
HIGH	openmed/interop/duckdb_udf.py	return keyword arguments for ``openmed.core.pii.deidentify``.	STRING
HIGH	openmed/clinical/grounding/loaders/rxnorm_loader.py	alias for :meth:`resolve`, matching the shared matcher vocabulary.	STRING
HIGH	openmed/clinical/grounding/loaders/loinc_loader.py	alias for :meth:`resolve`, matching the shared matcher vocabulary.	STRING
HIGH	openmed/clinical/grounding/loaders/icd10cm_loader.py	alias for :meth:`resolve`, matching the shared matcher vocabulary.	STRING
HIGH	openmed/clinical/grounding/loaders/rxnorm_loader.py	return the best match for ``query`` or ``none`` when unresolved.	STRING
HIGH	openmed/clinical/grounding/loaders/loinc_loader.py	return the best match for ``query`` or ``none`` when unresolved.	STRING
HIGH	openmed/clinical/grounding/loaders/icd10cm_loader.py	return the best match for ``query`` or ``none`` when unresolved.	STRING
HIGH	openmed/eval/utility.py	return a json-serializable report dictionary with stable keys.	STRING
HIGH	openmed/eval/error_analysis.py	return a json-serializable report dictionary with stable keys.	STRING
HIGH	openmed/eval/report.py	return a json-serializable report dictionary with stable keys.	STRING
HIGH	openmed/eval/datasets/pharmaconer.py	load deft records from an explicit local path. openmed does not bundle deft corpus text. pass a local path to data you a	STRING
HIGH	openmed/eval/datasets/cantemist.py	load deft records from an explicit local path. openmed does not bundle deft corpus text. pass a local path to data you a	STRING
HIGH	openmed/eval/datasets/deft.py	load deft records from an explicit local path. openmed does not bundle deft corpus text. pass a local path to data you a	STRING

AI Structural Patterns167 hits · 150 pts

Severity	File	Line	Context
LOW	openmed/__init__.py	399	CODE
LOW	openmed/aio.py	60	CODE
LOW	openmed/aio.py	111	CODE
LOW	openmed/aio.py	186	CODE
LOW	openmed/traces/audit.py	983	CODE
LOW	openmed/traces/transaction.py	131	CODE
LOW	openmed/traces/streaming.py	672	CODE
LOW	openmed/traces/streaming.py	722	CODE
LOW	openmed/traces/streaming.py	778	CODE
LOW	openmed/traces/streaming.py	376	CODE
LOW	openmed/traces/schemas/preference.py	437	CODE
LOW	openmed/core/document_stream.py	367	CODE
LOW	openmed/core/export_naming.py	433	CODE
LOW	openmed/core/config_provenance.py	201	CODE
LOW	openmed/core/manifest.py	136	CODE
LOW	openmed/core/hf_hub.py	159	CODE
LOW	openmed/core/arbitration.py	222	CODE
LOW	openmed/core/pipeline.py	256	CODE
LOW	openmed/core/pipeline.py	388	CODE
LOW	openmed/core/model_search.py	53	CODE
LOW	openmed/core/hf_publish.py	226	CODE
LOW	openmed/core/streaming.py	56	CODE
LOW	openmed/core/pii.py	1155	CODE
LOW	openmed/core/pii.py	1372	CODE
LOW	openmed/core/pii.py	2122	CODE
LOW	openmed/core/pii.py	2431	CODE
LOW	openmed/core/pii.py	2599	CODE
LOW	openmed/core/cascade.py	54	CODE
LOW	openmed/core/anonymizer/engine.py	109	CODE
LOW	openmed/ner/infer.py	118	CODE
LOW	openmed/onnx/maple_bundle.py	75	CODE
LOW	openmed/onnx/maple_bundle.py	135	CODE
LOW	openmed/onnx/convert.py	338	CODE
LOW	openmed/onnx/convert.py	827	CODE
LOW	openmed/onnx/tensorrt_export.py	306	CODE
LOW	openmed/onnx/gguf_int4_export.py	273	CODE
LOW	openmed/onnx/transformersjs.py	74	CODE
LOW	openmed/processing/object_storage.py	92	CODE
LOW	openmed/processing/resume.py	298	CODE
LOW	openmed/processing/batch.py	1746	CODE
LOW	openmed/processing/batch.py	812	CODE
LOW	openmed/processing/batch.py	981	CODE
LOW	openmed/processing/batch.py	1025	CODE
LOW	openmed/processing/batch.py	1093	CODE
LOW	openmed/processing/batch.py	1307	CODE
LOW	openmed/processing/kafka_connector.py	92	CODE
LOW	openmed/training/distill.py	356	CODE
LOW	openmed/training/distill.py	609	CODE
LOW	openmed/training/synthetic/translation_augment.py	190	CODE
LOW	openmed/interop/elasticsearch.py	131	CODE
LOW	openmed/interop/elasticsearch.py	359	CODE
LOW	openmed/interop/airflow.py	134	CODE
LOW	openmed/interop/airflow.py	556	CODE
LOW	openmed/interop/graph_orchestration.py	40	CODE
LOW	openmed/interop/tools.py	494	CODE
LOW	openmed/interop/tools.py	551	CODE
LOW	openmed/interop/postgres.py	315	CODE
LOW	openmed/interop/postgres.py	149	CODE
LOW	openmed/interop/spark.py	124	CODE
LOW	openmed/interop/beam.py	947	CODE
107 more matches not shown…

Cross-Language Confusion17 hits · 78 pts

Severity	File	Line	Snippet	Context
HIGH	openmed/interop/elasticsearch.py	432	Missing, null, and empty selected fields are counted as skipped. A	STRING
HIGH	openmed/interop/llamaindex.py	419	"null, mappings, lists, or tuples when redact_metadata=True"	CODE
HIGH	openmed/integrations/dataflow_tool_processor.py	115	detected-entity counts. Missing, null, empty, and non-string configured	STRING
HIGH	openmed/structured/synth.py	355	"DP synthesis supports only null, boolean, finite numeric, and string cells"	CODE
HIGH	openmed/structured/table_io.py	289	"CSV/TSV release output supports scalar values only: null, boolean, "	CODE
HIGH	openmed/eval/leaderboard.py	319	" const matches = !query \|\| normalize(row.dataset.search).includes(query);\n"	CODE
HIGH	openmed/eval/leaderboard.py	335	" if (query && matchCount > 0 && selected) {\n"	CODE
HIGH	openmed/eval/quant_delta.py	412	"""Return KL(reference \|\| candidate) over fixed-seed token frequencies."""	STRING
HIGH	openmed/eval/provenance_ledger.py	713	f"{path} must be numeric, boolean, null, nested metadata, or a sha256 digest"	CODE
HIGH	openmed/risk/release.py	2125	"Missing, null, and empty quasi-identifier states are treated as "	CODE
HIGH	tests/unit/test_publish_workflow_version.py	143	"group": "publish-openmed-${{ inputs.tag \|\| github.ref_name }}",	CODE
HIGH	tests/unit/test_publish_workflow_version.py	198	assert npm_verify["steps"][0]["with"]["ref"] == ("${{ inputs.tag \|\| github.ref }}")	CODE
HIGH	tests/unit/test_publish_workflow_version.py	228	assert npm_publish["steps"][0]["with"]["ref"] == ("${{ inputs.tag \|\| github.ref }}")	CODE
HIGH	tests/unit/traces/schemas/test_columnar.py	128	assert first.equals(second)	CODE
HIGH	tests/unit/traces/schemas/test_columnar.py	207	assert adapted.schema.equals(batch.schema, check_metadata=True)	CODE
HIGH	tests/unit/release/test_provenance_workflow.py	93	assert provenance["with"]["release-tag"] == ("${{ inputs.tag \|\| github.ref_name }}")	CODE
HIGH	skills/build_catalog.py	194	"git clone https://github.com/maziyarpanahi/openmed && cd openmed\n"	CODE

Modern AI Meta-Vocabulary17 hits · 51 pts

Severity	File	Line	Snippet	Context
MEDIUM	CHANGELOG.md	1493	- [#1885](https://github.com/maziyarpanahi/openmed/pull/1885) feat: add procedures zero-shot domain and DEVICE canonical	CODE
MEDIUM	CHANGELOG.md	1544	- [#1866](https://github.com/maziyarpanahi/openmed/pull/1866) docs: one-command multi-agent install and quickstart for t	CODE
MEDIUM	CHANGELOG.md	1549	- `7d592dd86b3f` Merge pull request #1866 from maziyarpanahi/feature/skills-multi-agent-readme	CODE
MEDIUM	openmed/core/review_workflow.py	384	# Collect every span up front so a context window can mask other nearby	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	580	# Extract context window	COMMENT
MEDIUM	openmed/mcp/server.py	517	# length/size/encoding guardrails as the library and REST entry points.	COMMENT
MEDIUM⚡	openmed/cli/typer_app.py	349	# zero-shot (GLiNER/GLiNER2)	COMMENT
MEDIUM	openmed/clinical/relations_lite.py	92	# keep the scaffold compatible with those model outputs without broadening	COMMENT
MEDIUM	openmed/clinical/validation/protocol.py	27	#: validation scaffold measures de-identification quality against user-supplied	COMMENT
MEDIUM	openmed/clinical/validation/protocol.py	77	#: Default acceptance thresholds. These are conservative scaffold defaults; a	COMMENT
MEDIUM	openmed/service/schemas.py	51	# guardrails. Errors never echo the (possibly PHI) text.	COMMENT
MEDIUM	tests/run-tests.sh	13	# Core test suite without slow markers (collect coverage for zero-shot modules)	COMMENT
MEDIUM	tests/unit/ner/__init__.py	1	# Unit tests for the zero-shot NER toolkit.	COMMENT
MEDIUM⚡	tests/unit/cli/test_false_negative_explorer_cli.py	165	# Span text and a surrounding-context window are surfaced from the fixture.	COMMENT
MEDIUM	docs/cli/openmed-init.md	1	# Project scaffolding with `openmed init`	COMMENT
MEDIUM	skills/building-gold-corpus/SKILL.md	54	## Quick start — scaffold the project	COMMENT
MEDIUM	skills/running-zeroshot-ner/SKILL.md	56	# 2) Run zero-shot NER with your OWN labels (comma-separated)	COMMENT

AI Slop Vocabulary11 hits · 33 pts

Severity	File	Line	Snippet	Context
MEDIUM	gates/target_leakage.yaml	3	# Signed floors keyed by (family, tier, format). The ReleaseGate harness	COMMENT
MEDIUM	openmed/eval/determinism.py	55	# Public API entrypoints exercised by the harness.	COMMENT
MEDIUM	openmed/eval/__init__.py	927	# Determinism regression harness (OM-822).	COMMENT
MEDIUM	openmed/eval/suites/multimodal_dicom.py	72	#: Device tier reported for pixel-space (image) PHI in the harness slices.	COMMENT
LOW⚡	tests/unit/core/test_anonymizer.py	202	# If the original isn't an email, just return the fake.	COMMENT
MEDIUM	…ts/unit/processing/test_zh_segmentation_conformance.py	380	# --- Layer A: the harness accepts a conforming backend ---------------------	COMMENT
MEDIUM	tests/unit/processing/test_zh_segmentation_docs.py	951	# The superseded claim that these crash the harness must be gone.	COMMENT
MEDIUM⚡	tests/unit/eval/test_multimodal_dicom_suite.py	270	# Report renders to the harness's Markdown/JSON surfaces.	COMMENT
MEDIUM	tests/unit/eval/test_determinism_harness.py	38	# Keep the reference corpus well under the 60s CI budget: the harness is the	COMMENT
MEDIUM	tests/unit/service/test_redaction_app.py	99	# AnyIO starts TestClient's event loop. That is test-harness plumbing,	COMMENT
MEDIUM	tests/fuzz/fuzz_deidentify.py	252	if __name__ == "__main__": # pragma: no cover - exercised as a local harness.	CODE

Over-Commented Block19 hits · 18 pts

Severity	File	Line	Snippet	Context
LOW	install-skills.sh	1	#!/usr/bin/env bash	COMMENT
LOW	CHANGELOG.md	621	#1919, #1920, #1921, #1922, #1923, #1924, #1925, #1926, #1928, #1929,	COMMENT
LOW	openmed/core/name_order.py	41		COMMENT
LOW	openmed/core/anonymizer/providers/clinical_ids.py	3341	digit *= 2	COMMENT
LOW	openmed/core/data/clinical_protect_terms.txt	1	# OpenMed clinical protection terms v1	COMMENT
LOW	openmed/structured/hierarchies/functions.py	481	# --------------------------------------------------------------------------- #	COMMENT
LOW	openmed/clinical/experiencer.py	101	"neighbour",	COMMENT
LOW	openmed/clinical/context.py	121	# Ported ConText temporal lexicon. Cues are matched case-insensitively and on	COMMENT
LOW	openmed/clinical/normalization/ranker.py	41	#: Reciprocal-rank-fusion damping constant. The documented default follows the	COMMENT
LOW	openmed/clinical/lexicons/context_cues.py	461	)	COMMENT
LOW	openmed/clinical/data/context_rules.yaml	1	# OpenMed's starter ConText rule set.	COMMENT
LOW	js/openmedkit-flutter/native/openmed_ffi.h	1	#ifndef OPENMED_FFI_H	COMMENT
LOW	js/openmedkit-flutter/native/openmed_ffi.c	1	#include "openmed_ffi.h"	COMMENT
LOW	docs/profiling.md	201		COMMENT
LOW	docs/security/pip-audit-ignore.toml	1	# Time-boxed pip-audit ignores.	COMMENT
LOW	docs/clinical/temporal-normalization.md	21	spans,	COMMENT
LOW	…OpenMedKit/Tests/OpenMedKitTests/OpenMedMLXTests.swift	321	// Nemotron-PII fine-tunes set ``classifier_bias: true`` so the	COMMENT
LOW	swift/OpenMedKit/Sources/OpenMedKit/OpenMedKit.swift	1	#if canImport(MLX) && canImport(Tokenizers) && !os(watchOS) && !os(visionOS)	COMMENT
LOW	skills/exporting-bulk-fhir/SKILL.md	41	# 1) Kickoff (async). Ask for clinical-note-bearing resource types.	COMMENT

Magic Placeholder Names2 hits · 12 pts

Severity	File	Line	Snippet	Context
HIGH⚡	tests/unit/core/test_secrets.py	139	'OPENMED_API_KEY="your-api-key"; '	CODE
HIGH	docs/security/secret-detection.md	45	Explicit placeholders such as `<TOKEN>`, `your-api-key`, `replace-me`, and	CODE

Redundant / Tautological Comments5 hits · 8 pts

Severity	File	Line	Snippet	Context
LOW	openmed/core/models.py	670	# Check if it's a registry key	COMMENT
LOW	openmed/core/models.py	675	# Check if it needs org prefix	COMMENT
LOW	openmed/processing/advanced_ner.py	629	# Check if same entity type and close proximity	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	685	# Check if we have token-level data (no aggregation_strategy used)	COMMENT
LOW	openmed/processing/outputs.py	353	# Check if entities are adjacent and same label	COMMENT

Dead Code4 hits · 8 pts

Severity	File	Line	Context
MEDIUM	tests/unit/traces/test_audit.py	180	CODE
MEDIUM	tests/unit/traces/test_audit.py	239	CODE
MEDIUM	tests/unit/traces/test_fidelity.py	283	CODE
MEDIUM	tests/unit/interop/test_spark.py	295	CODE

Verbosity Indicators3 hits · 7 pts

Severity	File	Line	Snippet	Context
LOW⚡	openmed/processing/advanced_ner.py	683	# Step 1: Smart grouping if requested and we have token-level output	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	705	# Step 2: Advanced filtering	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	708	# Step 3: Merge adjacent entities if enabled	COMMENT

Structural Annotation Overuse3 hits · 7 pts

Severity	File	Line	Snippet	Context
LOW⚡	openmed/processing/advanced_ner.py	683	# Step 1: Smart grouping if requested and we have token-level output	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	705	# Step 2: Advanced filtering	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	708	# Step 3: Merge adjacent entities if enabled	COMMENT

Self-Referential Comments1 hit · 4 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/unit/test_profiles.py	148	# Create a custom profile	COMMENT

Overly Generic Function Names4 hits · 4 pts

Severity	File	Line	Snippet	Context
LOW	tests/unit/test_profiling.py	282	def my_function():	CODE
LOW	tests/unit/skills/test_bundle_verify.py	451	"utils.py": "def helper():\n pass\n",	CODE
LOW	tests/unit/skills/test_bundle_verify.py	469	"utils.py": "def helper():\n pass\n",	CODE
LOW	tests/unit/service/test_rest_client.py	41	def handle_request(self, request: httpx.Request) -> httpx.Response:	CODE

Slop Phrases2 hits · 3 pts

Severity	File	Line	Snippet	Context
MEDIUM	openmed/interop/icd11_api.py	77	"""Raised when the WHO ICD-API cannot provide a valid response."""	STRING
MEDIUM	skills/build_catalog.py	39	r"written by (?:claude\|codex\|gpt)\|as an ai language model)",	CODE

Example Usage Blocks1 hit · 2 pts

Severity	File	Line	Snippet	Context
LOW	install-skills.sh	10	# Usage:	COMMENT

Analysis Overview

What These Metrics Mean

Score History

Severity Breakdown

Directory Score Breakdown

Pattern Findings