maziyarpanahi/openmed

25.7

Adjusted Score

25.7

Raw Score

100%

Time Factor

2026-07-14

Last Push

4.6K

Stars

Python

Language

338.8K

Lines of Code

1.2K

Files

7.8K

Pattern Hits

2026-07-14

Scan Date

0.05

HC Hit Rate

What These Metrics Mean

Adjusted Score: Primary synthetic code indicator. Raw score normalised per 1,000 lines of code and multiplied by the temporal discount factor. This is the definitive comparative metric — use it to rank repositories by AI authorship density.
Raw Score: The unmodified sum of all severity-weighted, context-multiplied pattern match scores before temporal discounting. Reflects the absolute signal strength independent of when the repository was last active.
Time Factor: The temporal discount multiplier (0–100%) applied to the raw score. Repositories last updated before ChatGPT's launch (Nov 2022) receive a 5% factor. Full signal is only assigned to repositories active in the post-adoption era (Jan 2024+).
Pattern Hits: Total count of individual pattern matches across all files and categories. A high hit count with a low score may indicate a very large codebase with isolated AI snippets; a low count with a high score indicates dense, concentrated AI signatures.
HC Hit Rate: High+Critical pattern hits per file, averaged across the repository. This orthogonal signal catches repositories where a few files are densely packed with high-severity AI tells — a strong indicator even when the normalised score appears moderate due to codebase size.
Lines of Code / Files: Total lines and files analysed. The scanner examines 94 file extensions. These denominators are used to normalise the score, enabling fair comparison between repositories of vastly different sizes.

Score History

This chart maps the temporal evolution of the adjusted synthetic code score across successive scan runs. An upward trajectory indicates ongoing incorporation of AI-generated code or expanding LLM-assisted scaffolding; a stable or declining trajectory may reflect active human refactoring, code removal, or the adoption of stricter authorship policies. The dashed secondary line (right axis) independently tracks total raw pattern hit count, which can diverge from the normalised score when codebase size changes significantly between scans.

Severity Breakdown

Classifies detected patterns by their diagnostic confidence and structural impact. CRITICAL patterns (coefficient 10) represent definitive synthetic signatures — hallucinated imports, explicit LLM attribution metadata — virtually never produced by human authors. HIGH (5) indicates strong structural tells such as cross-file repetition or cross-linguistic idioms. MEDIUM (2) covers recognisable conversational padding and AI-specific vocabulary. LOW (1) captures subtle indicators like tautological comments and generic boilerplate that require density to carry independent signal.

CRITICAL 0HIGH 56MEDIUM 413LOW 7291

Directory Score Breakdown

This horizontal bar chart decomposes the repository's raw synthetic code score by top-level directory, allowing you to pinpoint precisely which modules or components carry the highest AI authorship density. Directories with disproportionately high scores relative to their size warrant targeted manual review: concentrated AI signatures often trace back to mass-generated configuration layers, auto-ported test suites, LLM-scaffolded boilerplate classes, or entire subsystems authored under heavy copilot assistance. Use this view to prioritise your human code-review effort.

Pattern Findings

The scanner identified 7760 distinct pattern matches across 20 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a statistically significant AI authorship indicator. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.

Reading the findings table: The Severity column indicates the diagnostic confidence level (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — comment-context matches receive a ×1.5 weight because LLMs systematically over-annotate. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier as dense clusters constitute far stronger evidence of synthetic authorship than isolated hits.

Hyper-Verbose Identifiers4104 hits · 4214 pts

Severity	File	Line	Snippet	Context
LOW	openmed/core/repro_hash.py	38	def compute_reproducibility_hash(	CODE
LOW	openmed/core/repro_hash.py	88	def compute_environment_lock_digest(lock_path: str \| Path = "uv.lock") -> str:	CODE
LOW	openmed/core/repro_hash.py	94	def compute_training_reproducibility_hash(	CODE
LOW	openmed/core/repro_hash.py	124	def build_training_provenance(	CODE
LOW	openmed/core/repro_hash.py	172	def write_training_provenance(	CODE
LOW	openmed/core/repro_hash.py	280	def _normalise_training_provenance(provenance: Mapping[str, Any]) -> dict[str, Any]:	CODE
LOW	openmed/core/repro_hash.py	353	def _verify_manifest_row_hash(row: Mapping[str, Any], recorded_hash: str) -> None:	CODE
LOW	openmed/core/quality_gates.py	328	def validate_entity_spans_strict(	CODE
LOW	openmed/core/quality_gates.py	389	def resolve_overlapping_entities(	CODE
LOW	openmed/core/quality_gates.py	453	def detect_overlapping_entities(	CODE
LOW	openmed/core/audit.py	607	def export_review_bundle_json(self) -> str:	CODE
LOW	openmed/core/models.py	536	def _resolve_attn_implementation(	CODE
LOW	openmed/core/models.py	549	def _apply_attention_pipeline_kwargs(self, pipeline_kwargs: Dict[str, Any]) -> None:	CODE
LOW	openmed/core/models.py	624	def _build_load_quantization_config(	CODE
LOW	openmed/core/models.py	656	def _build_pipeline_cache_key(	CODE
LOW	openmed/core/thresholds.py	151	def validate_threshold_matrix(matrix: Mapping[str, Any]) -> None:	CODE
LOW	openmed/core/thresholds.py	244	def membership_defense_for_profile(	CODE
LOW	openmed/core/thresholds.py	274	def apply_membership_defense_to_score(	CODE
LOW	openmed/core/thresholds.py	457	def _validate_membership_defense(entry: Any, path: str) -> None:	CODE
LOW	openmed/core/locale_formats.py	536	def _parsed_date_from_candidate(	CODE
LOW	openmed/core/locale_formats.py	549	def _normalize_number_with_locale(	CODE
LOW	openmed/core/locale_formats.py	579	def _normalize_number_without_locale(value: str, sign: str) -> NormalizedNumber:	CODE
LOW	openmed/core/locale_formats.py	635	def _normalize_space_grouped_number(value: str, sign: str) -> NormalizedNumber:	CODE
LOW	openmed/core/locale_formats.py	650	def _clean_valid_space_grouping(value: str) -> str \| None:	CODE
LOW	openmed/core/locale_formats.py	684	def _invalid_or_ambiguous_number(part: str) -> NormalizedNumber:	CODE
LOW	openmed/core/hf_hub.py	264	def _import_snapshot_download() -> tuple[Any, type[Exception]]:	CODE
LOW	openmed/core/arbitration.py	395	def _collapse_exact_duplicates(	CODE
LOW	openmed/core/offline.py	65	def network_blocked_if_offline(	CODE
LOW	openmed/core/pii_entity_merger.py	712	def merge_entities_with_semantic_units(	CODE
LOW	openmed/core/pii_entity_merger.py	892	def _coalesce_overlapping_merged_entities(	CODE
LOW	openmed/core/custom_recognizer.py	276	def apply_to_prediction_result(	CODE
LOW	openmed/core/script_detect.py	313	def candidate_languages_for_script(script: str) -> tuple[str, ...]:	CODE
LOW	openmed/core/script_detect.py	319	def normalize_for_pii_detection(text: str) -> DetectionNormalization:	CODE
LOW	openmed/core/clinical_protect.py	89	def _load_bundled_terms_cached() -> tuple[str, ...]:	CODE
LOW	openmed/core/clinical_protect.py	156	def protection_options_from_config(config: Any) -> dict[str, Any]:	CODE
LOW	openmed/core/clinical_protect.py	291	def _looks_like_direct_identifier(surface: str) -> bool:	CODE
LOW	openmed/core/backends.py	200	def select_privacy_filter_backend(	CODE
LOW	openmed/core/backends.py	230	def resolve_privacy_filter_model(	CODE
LOW	openmed/core/backends.py	260	def create_privacy_filter_pipeline(model_name: str, config: Any = None) -> Callable:	CODE
LOW	openmed/core/policy_lint.py	231	def _loads_tracking_duplicates(raw_json: str) -> Mapping[str, Any]:	CODE
LOW	openmed/core/policy_lint.py	314	def _policy_label_action_errors(	CODE
LOW	openmed/core/policy_lint.py	334	def _threshold_profile_errors(	CODE
LOW	openmed/core/policy_lint.py	416	def _unreachable_policy_label_action_warnings(	CODE
LOW⚡	openmed/core/pipeline.py	76	def original_index_to_normalized(self, index: int) -> int \| None:	CODE
LOW⚡	openmed/core/pipeline.py	79	def normalized_index_to_original(self, index: int) -> int:	CODE
LOW⚡	openmed/core/pipeline.py	82	def original_span_to_normalized(self, start: int, end: int) -> tuple[int, int]:	CODE
LOW	openmed/core/pipeline.py	98	def normalized_span_to_original_offsets(	CODE
LOW	openmed/core/pipeline.py	949	def _apply_calibration_thresholds(	CODE
LOW	openmed/core/pipeline.py	1227	def _registered_detector_spans(	CODE
LOW	openmed/core/pipeline.py	1316	def _suppress_custom_allowed_spans(	CODE
LOW	openmed/core/pipeline.py	1392	def _iter_normalization_segments(text: str):	CODE
LOW	openmed/core/pipeline.py	1446	def _section_detection_unavailable_metadata(exc: ImportError) -> dict[str, Any]:	CODE
LOW	openmed/core/pipeline.py	1477	def _remap_section_metadata_to_normalized(	CODE
LOW	openmed/core/pipeline.py	1495	def _remap_section_to_normalized(section: Any, offset_map: OffsetMap) -> Any:	CODE
LOW	openmed/core/pipeline.py	1747	def _arbitration_trace_metadata(	CODE
LOW	openmed/core/pipeline.py	1870	def _arbitration_threshold_trace(	CODE
LOW	openmed/core/pipeline.py	1932	def _arbitration_tie_break_rule(	CODE
LOW	openmed/core/pipeline.py	1993	def _prediction_result_from_spans(	CODE
LOW	openmed/core/pipeline.py	2051	def _remap_pii_result_to_original(	CODE
LOW	openmed/core/pipeline.py	2071	def _remap_entity_to_original(	CODE
4044 more matches not shown…

Unused Imports2120 hits · 1674 pts

Severity	File	Line	Context
LOW	openmed/__init__.py	3	CODE
LOW	openmed/__init__.py	10	CODE
LOW	openmed/__init__.py	11	CODE
LOW	openmed/__init__.py	12	CODE
LOW	openmed/__init__.py	12	CODE
LOW	openmed/__init__.py	12	CODE
LOW	openmed/__init__.py	12	CODE
LOW	openmed/__init__.py	12	CODE
LOW	openmed/__init__.py	19	CODE
LOW	openmed/__init__.py	19	CODE
LOW	openmed/__init__.py	19	CODE
LOW	openmed/__init__.py	19	CODE
LOW	openmed/__init__.py	20	CODE
LOW	openmed/__init__.py	21	CODE
LOW	openmed/__init__.py	21	CODE
LOW	openmed/__init__.py	22	CODE
LOW	openmed/__init__.py	22	CODE
LOW	openmed/__init__.py	22	CODE
LOW	openmed/__init__.py	22	CODE
LOW	openmed/__init__.py	22	CODE
LOW	openmed/__init__.py	29	CODE
LOW	openmed/__init__.py	29	CODE
LOW	openmed/__init__.py	30	CODE
LOW	openmed/__init__.py	30	CODE
LOW	openmed/__init__.py	30	CODE
LOW	openmed/__init__.py	30	CODE
LOW	openmed/__init__.py	30	CODE
LOW	openmed/__init__.py	30	CODE
LOW	openmed/__init__.py	30	CODE
LOW	openmed/__init__.py	39	CODE
LOW	openmed/__init__.py	39	CODE
LOW	openmed/__init__.py	39	CODE
LOW	openmed/__init__.py	41	CODE
LOW	openmed/__init__.py	41	CODE
LOW	openmed/__init__.py	41	CODE
LOW	openmed/__init__.py	41	CODE
LOW	openmed/__init__.py	41	CODE
LOW	openmed/__init__.py	48	CODE
LOW	openmed/__init__.py	48	CODE
LOW	openmed/__init__.py	48	CODE
LOW	openmed/__init__.py	48	CODE
LOW	openmed/__init__.py	48	CODE
LOW	openmed/__init__.py	55	CODE
LOW	openmed/__init__.py	55	CODE
LOW	openmed/__init__.py	55	CODE
LOW	openmed/__init__.py	55	CODE
LOW	openmed/__init__.py	61	CODE
LOW	openmed/__init__.py	61	CODE
LOW	openmed/__init__.py	67	CODE
LOW	openmed/__init__.py	67	CODE
LOW	openmed/__init__.py	67	CODE
LOW	openmed/__init__.py	67	CODE
LOW	openmed/__init__.py	73	CODE
LOW	openmed/__init__.py	73	CODE
LOW	openmed/__init__.py	73	CODE
LOW	openmed/__init__.py	73	CODE
LOW	openmed/__init__.py	73	CODE
LOW	openmed/__init__.py	73	CODE
LOW	openmed/__init__.py	73	CODE
LOW	openmed/__init__.py	73	CODE
2060 more matches not shown…

Decorative Section Separators396 hits · 1349 pts

Severity	File	Line	Snippet	Context
MEDIUM	openmed/core/labels.py	23	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	25	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	266	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	268	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	624	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/labels.py	626	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/config.py	416	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/config.py	418	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	63	# ============================================================================	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	65	# ============================================================================	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	515	# ============================================================================	COMMENT
MEDIUM	openmed/core/pii_entity_merger.py	517	# ============================================================================	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	3856	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	3858	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	4353	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	openmed/core/pii_i18n.py	4355	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	34	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	36	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	123	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	125	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	144	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	146	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	1137	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	1139	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	1397	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	1399	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	1546	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	1548	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	2881	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	2883	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3084	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3086	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3109	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/pii_i18n.py	3111	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/decoding/viterbi.py	18	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/decoding/viterbi.py	20	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/decoding/viterbi.py	103	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/decoding/viterbi.py	105	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/decoding/viterbi.py	233	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/decoding/viterbi.py	235	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	31	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	33	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	60	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	62	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	80	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	82	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	109	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	111	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	155	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	157	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	244	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	246	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	322	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	324	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	416	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	418	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	432	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/registry.py	434	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/format_preserve.py	22	# ---------------------------------------------------------------------------	COMMENT
MEDIUM	openmed/core/anonymizer/format_preserve.py	24	# ---------------------------------------------------------------------------	COMMENT
336 more matches not shown…

Fake / Example Data431 hits · 490 pts

Severity	File	Line	Snippet	Context
LOW	CHANGELOG.md	565	- `method="replace"` outputs no longer come from the prior hardcoded list (`["Jane Smith", "John Doe", "Alex Johnson	CODE
LOW	CHANGELOG.md	814	- Expanded locale fake-data dictionaries with `FIRST_NAME`, `LAST_NAME`, and `ZIPCODE` values across supported languag	CODE
LOW	README.md	445	[('NAME', 'John Doe'), ('DATE', '01/15/1970'), ('SSN', '123-45-6789')]	CODE
LOW⚡	openmed/core/pii_i18n.py	3862	"NAME": ["Jane Smith", "John Doe", "Alex Johnson", "Sam Taylor"],	CODE
LOW⚡	openmed/core/pii_i18n.py	3865	"EMAIL": ["patient@example.com", "contact@example.org"],	CODE
LOW⚡	openmed/core/pii_i18n.py	3866	"PHONE": ["555-0123", "555-0456", "555-0789"],	CODE
LOW⚡	openmed/core/pii_i18n.py	3868	"STREET_ADDRESS": ["123 Main St", "456 Oak Ave"],	CODE
LOW	openmed/core/pii_i18n.py	3990	"EMAIL": ["patient@example.in", "sampark@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4027	"EMAIL": ["patient@example.in", "sampark@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4064	"EMAIL": ["patient@example.eg", "contact@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4101	"EMAIL": ["patient@example.co.il", "contact@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4138	"EMAIL": ["patient@example.jp", "renraku@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4215	"EMAIL": ["pasyente@example.ph", "kontak@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4230	"EMAIL": ["patient@example.dk", "kontakt@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4250	"EMAIL": ["patient@example.th", "contact@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4268	"EMAIL": ["pacients@example.lv", "kontakts@example.org"],	CODE
LOW	openmed/core/pii_i18n.py	4288	"EMAIL": ["pacient@example.sk", "kontakt@example.org"],	CODE
LOW	openmed/core/pii.py	2221	# Canonical labels that don't have a fake-data key fall through to the	COMMENT
LOW⚡	openmed/core/pii.py	2275	fake_data = LANGUAGE_FAKE_DATA.get(lang, LANGUAGE_FAKE_DATA["en"])	CODE
LOW⚡	openmed/core/pii.py	2278	if key in fake_data:	CODE
LOW⚡	openmed/core/pii.py	2279	return random.choice(fake_data[key])	CODE
LOW	openmed/core/pii.py	18	... {"[NAME]": "Casey Example", "[PHONE]": "555-0100"},	STRING
LOW⚡	openmed/core/anonymizer/format_preserve.py	106	def preserve_email_pattern(original: str, fake_email: str) -> str:	CODE
LOW⚡	openmed/core/anonymizer/format_preserve.py	107	"""Use ``fake_email``'s local part with ``original``'s domain.	STRING
LOW⚡	openmed/core/anonymizer/format_preserve.py	111	the local part. Falls back to ``fake_email`` verbatim if either side	STRING
LOW⚡	openmed/core/anonymizer/format_preserve.py	114	if "@" not in original or "@" not in fake_email:	CODE
LOW⚡	openmed/core/anonymizer/format_preserve.py	115	return fake_email	CODE
LOW⚡	openmed/core/anonymizer/format_preserve.py	116	fake_local = fake_email.split("@", 1)[0]	CODE
LOW	openmed/core/anonymizer/engine.py	64	consistency (so "John Doe" appearing twice gets one surrogate).	STRING
LOW	openmed/processing/display.py	361	>>> "PERSON" in html and "John Doe" in html	STRING
LOW	openmed/mlx/inference.py	190	"word": "John Doe", "start": 8, "end": 16}, ...]	STRING
LOW	tests/unit/test_pii_multilingual_regression.py	86	_ent("John Doe", "first_name", 8, 16, 0.95),	CODE
LOW⚡	tests/unit/test_quality_gates.py	97	# Entity claims text is "Jane Doe" but span points to "John Doe"	COMMENT
LOW⚡	tests/unit/test_quality_gates.py	97	# Entity claims text is "Jane Doe" but span points to "John Doe"	COMMENT
LOW⚡	tests/unit/test_quality_gates.py	50	entities = [_ent("John Doe", start=8, end=16)]	CODE
LOW⚡	tests/unit/test_quality_gates.py	100	text="Jane Doe",	CODE
LOW⚡	tests/unit/test_quality_gates.py	278	_ent("John Doe", label="OTHER", start=8, end=16, confidence=0.60),	CODE
LOW⚡	tests/unit/test_quality_gates.py	279	_ent("John Doe", label="OTHER", start=8, end=16, confidence=0.95),	CODE
LOW	tests/unit/test_quality_gates.py	134	_ent("John Doe", start=0, end=8),	CODE
LOW	tests/unit/test_quality_gates.py	198	_ent("John Doe", start=0, end=8),	CODE
LOW	tests/unit/test_quality_gates.py	318	_ent("John Doe", label="PERSON", start=8, end=16),	CODE
LOW	tests/unit/test_quality_gates.py	334	_ent("John Doe", label="PERSON", start=8, end=16),	CODE
LOW⚡	tests/unit/test_display.py	391	text="John Doe", label="PERSON", confidence=0.9, start=8, end=16	CODE
LOW⚡	tests/unit/test_display.py	479	assert "John Doe" in _visible_text(html)	CODE
LOW⚡	tests/unit/test_display.py	492	assert "John Doe" in _visible_text(html)	CODE
LOW⚡	tests/unit/test_display.py	513	"John Doe",	CODE
LOW	tests/unit/test_display.py	124	assert "John Doe" in marks[0]["_text"]	CODE
LOW	tests/unit/test_display.py	463	text="John Doe",	CODE
LOW	tests/unit/test_display.py	553	text="John Doe",	CODE
LOW⚡	tests/unit/test_examples_smoke.py	114	SimpleNamespace(label="NAME", text="John Doe", start=0, end=8, confidence=0.97),	CODE
LOW⚡	tests/unit/test_examples_smoke.py	123	["NAME", "John Doe", "0", "8", "0.97"],	CODE
LOW⚡	tests/unit/test_examples_smoke.py	137	label="NAME", text="John Doe", start=0, end=8, confidence=0.9	CODE
LOW⚡	tests/unit/test_examples_smoke.py	148	assert view.entity_rows == [["NAME", "John Doe", "0", "8", "0.90"]]	CODE
LOW⚡	tests/unit/test_pii.py	36	text="John Doe", label="NAME", start=8, end=16, confidence=0.95	CODE
LOW⚡	tests/unit/test_pii.py	39	text="555-1234", label="PHONE", start=20, end=28, confidence=0.90	CODE
LOW⚡	tests/unit/test_pii.py	69	text="John Doe",	CODE
LOW⚡	tests/unit/test_pii.py	76	assert entity.text == "John Doe"	CODE
LOW⚡	tests/unit/test_pii.py	97	text="555-1234",	CODE
LOW⚡	tests/unit/test_pii.py	103	original_text="555-1234",	CODE
LOW⚡	tests/unit/test_pii.py	107	assert entity.original_text == "555-1234"	CODE
371 more matches not shown…

Modern Structural Boilerplate288 hits · 288 pts

Severity	File	Line	Snippet	Context
LOW	openmed/__init__.py	144	logger = logging.getLogger(__name__)	CODE
LOW	openmed/__init__.py	643	__all__ = [	CODE
LOW	openmed/core/safety_sweep.py	225	__all__ = [	CODE
LOW	openmed/core/repro_hash.py	411	__all__ = [	CODE
LOW	openmed/core/labels.py	1014	__all__ = [	CODE
LOW	openmed/core/quality_gates.py	23	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/quality_gates.py	216	def _set_span_valid(entity: Any, valid: bool) -> None:	CODE
LOW	openmed/core/config.py	304	def set_config(config: OpenMedConfig) -> None:	CODE
LOW	openmed/core/audit.py	630	__all__ = [	CODE
LOW	openmed/core/models.py	9	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/surrogate_vault.py	277	def set_epoch_manager(self, epoch_manager: _EpochManager) -> None:	CODE
LOW	openmed/core/surrogate_vault.py	1124	__all__ = [	CODE
LOW	openmed/core/baseline.py	238	__all__ = [	CODE
LOW	openmed/core/thresholds.py	498	__all__ = [	CODE
LOW	openmed/core/locale_formats.py	715	__all__ = [	CODE
LOW	openmed/core/date_shift.py	51	__all__ = [	CODE
LOW	openmed/core/hf_hub.py	32	__all__ = [	CODE
LOW	openmed/core/arbitration.py	491	__all__ = [	CODE
LOW	openmed/core/policy.py	911	__all__ = [	CODE
LOW	openmed/core/__init__.py	58	__all__ = [	CODE
LOW	openmed/core/custom_recognizer.py	545	__all__ = [	CODE
LOW	openmed/core/script_detect.py	398	__all__ = [	CODE
LOW	openmed/core/clinical_protect.py	311	__all__ = [	CODE
LOW	openmed/core/backends.py	25	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/policy_lint.py	463	__all__ = [	CODE
LOW	openmed/core/pipeline.py	47	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/pipeline.py	2294	__all__ = [	CODE
LOW	openmed/core/hf_publish.py	29	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/detector_plugins.py	68	logger = logging.getLogger(__name__)	CODE
LOW	openmed/core/detector_plugins.py	387	__all__ = [	CODE
LOW	openmed/core/name_order.py	33	__all__ = [	CODE
LOW	openmed/core/redaction_strength.py	249	__all__ = [	CODE
LOW	openmed/core/streaming.py	328	def _update_hashes(self, original_text: str, redacted_text: str) -> None:	CODE
LOW	openmed/core/streaming.py	500	__all__ = [	CODE
LOW	openmed/core/policy_diff.py	460	__all__ = [	CODE
LOW	openmed/core/explain.py	572	__all__ = [	CODE
LOW	openmed/core/rtl_render.py	396	__all__ = [	CODE
LOW	openmed/core/cascade.py	372	__all__ = [	CODE
LOW	openmed/core/decoding/graph.py	767	__all__ = [	CODE
LOW	openmed/core/decoding/__init__.py	41	__all__ = [	CODE
LOW	openmed/core/decoding/spans.py	327	__all__ = [	CODE
LOW	openmed/core/schemas/__init__.py	20	__all__ = [	CODE
LOW	openmed/core/schemas/span.py	326	__all__ = [	CODE
LOW	openmed/core/anonymizer/registry.py	499	__all__ = [	CODE
LOW	openmed/core/anonymizer/format_preserve.py	170	__all__ = [	CODE
LOW	openmed/core/anonymizer/__init__.py	58	__all__ = [	CODE
LOW	openmed/core/anonymizer/engine.py	336	__all__ = ["Anonymizer", "AnonymizerConfig"]	CODE
LOW	openmed/core/anonymizer/locales.py	193	__all__ = [	CODE
LOW	openmed/core/anonymizer/providers/clinical_ids.py	1628	__all__ = [	CODE
LOW	openmed/core/anonymizer/providers/__init__.py	44	__all__ = [	CODE
LOW	openmed/core/anonymizer/providers/registry_ids.py	441	__all__ = [	CODE
LOW	openmed/ner/labels.py	209	__all__ = [	CODE
LOW	openmed/ner/adapter.py	220	__all__ = [	CODE
LOW	openmed/ner/__init__.py	34	__all__ = [	CODE
LOW	openmed/ner/infer.py	309	__all__ = [	CODE
LOW	openmed/ner/indexing.py	394	__all__ = [	CODE
LOW	openmed/ner/families/__init__.py	14	__all__ = [	CODE
LOW	openmed/ner/families/base.py	23	__all__ = ["ModelFamily", "SupportsPrediction"]	CODE
LOW	openmed/ner/families/gliner2.py	190	__all__ = [	CODE
LOW	openmed/ner/families/gliner.py	132	__all__ = [	CODE
228 more matches not shown…

Docstring Block Structure42 hits · 210 pts

Severity	File	Line	Snippet	Context
HIGH	openmed/core/config.py	210	Create config from a named profile. Args: profile_name: Name of the profile (dev, prod, test, fast,	STRING
HIGH	openmed/core/config.py	440	Get the settings for a specific profile. Args: profile_name: Name of the profile. Returns: Dic	STRING
HIGH	openmed/core/config.py	487	Delete a custom profile. Args: profile_name: Name of the profile to delete. Returns: True if d	STRING
HIGH	openmed/core/models.py	108	Load a TokenClassification model and tokenizer. Args: model_name: Name of the model to load. Can be	STRING
HIGH	openmed/core/locale_formats.py	441	Return date order and number separators for an OpenMed language code. Args: lang: OpenMed ISO 639-1 languag	STRING
HIGH	openmed/core/hf_hub.py	66	Resolve a registry alias or bare name to a fully-qualified Hub repo id. A value that already looks like a Hub id (c	STRING
HIGH	openmed/core/hf_hub.py	107	Pre-download an OpenMed model snapshot and return its local path. The friendly name_or_alias is resolved to a Hub	STRING
HIGH	openmed/core/hf_hub.py	173	Return the OpenMed model repos present in the local Hugging Face cache. The scan is read-only and never touches the	STRING
HIGH	openmed/core/hf_hub.py	240	Delete a single OpenMed repo from the local Hugging Face cache. Args: name: Registry key, repo id, or bare	STRING
HIGH	openmed/core/pii_i18n.py	4383	Return combined PII patterns for the given language. English patterns (email, URL, IP, etc.) are universal and alwa	STRING
HIGH	openmed/core/rtl_render.py	252	Render de-identified ``text`` with bidi-safe masks. For a right-to-left or mixed-script document, each replacement	STRING
HIGH	openmed/core/rtl_render.py	338	Wrap a single mask/surrogate token in ``FSI ... PDI`` isolates. A convenience for callers that build redacted outpu	STRING
HIGH	openmed/core/rtl_render.py	369	Remove bidi isolate/embedding/override controls and directional marks. For source text without pre-existing bidi co	STRING
HIGH	openmed/ner/indexing.py	99	Discover models located under ``models_dir`` and return a structured index. Args: models_dir: Root director	STRING
HIGH	openmed/interop/fhir_operations.py	129	Return a de-identified copy of a single FHIR resource. Walks the resource's string-typed elements and its ``text``	STRING
HIGH	openmed/interop/fhir_operations.py	167	Return a de-identified copy of a FHIR Bundle. Applies :func:`de_identify_resource` to every ``entry.resource`` whil	STRING
HIGH	openmed/interop/fhir_operations.py	201	Run ``$de-identify`` over a FHIR ``Parameters`` envelope. Accepts a ``Parameters`` resource carrying a ``resource``	STRING
HIGH	openmed/interop/cdm_etl.py	377	Transform clinical note entities into deterministic CDM-style tables. Args: notes: Iterable of :class:`Clin	STRING
HIGH	openmed/interop/fhir_bulk.py	346	De-identify every ``*.ndjson`` file in a FHIR bulk export directory. The output directory mirrors the input directo	STRING
HIGH	openmed/interop/cda.py	174	Redact PHI from a CDA/C-CDA XML document. Args: document_or_path: XML string/bytes or a filesystem path.	STRING
HIGH	openmed/interop/omop/cdm_loader.py	545	Build OMOP CDM tables from grounded clinical note records. Args: notes: Iterable of mappings or objects wit	STRING
HIGH	openmed/utils/validation.py	14	Validate and clean input text. Args: text: Input text to validate. min_length: Minimum allowed text	STRING
HIGH	openmed/utils/validation.py	61	Validate model name format. Args: model_name: Model name to validate. Returns: Validated model	STRING
HIGH	openmed/utils/validation.py	109	Validate confidence threshold value. Args: threshold: Confidence threshold to validate. Returns:	STRING
HIGH	openmed/utils/validation.py	130	Validate output format name. Args: format_name: Output format to validate. Returns: Validated	STRING
HIGH	openmed/utils/validation.py	155	Validate batch size for processing. Args: batch_size: Batch size to validate. max_batch_size: Maxim	STRING
HIGH	openmed/multimodal/documents_markdown.py	48	Extract normalized text and source offsets from Markdown/GFM content. Args: source: A filesystem path, raw	STRING
HIGH	openmed/multimodal/epub.py	93	Extract EPUB spine text and source-offset metadata. Args: path: EPUB file path. Returns: An :c	STRING
HIGH	openmed/clinical/exporters/flat_table.py	137	Return a pandas DataFrame using the fixed flat-table schema. pandas is imported lazily so importing this module has	STRING
HIGH	openmed/clinical/exporters/code_provenance.py	33	Return a copy of ``coding`` stamped with code-system version provenance. ``version_pins`` may be keyed by a short v	STRING
HIGH	openmed/clinical/exporters/codeable_concept_simple.py	54	Return the canonical HL7 FHIR R4 system URI for vocabulary_id. Accepts either a short vocabulary id (case-insensi	STRING
HIGH	openmed/clinical/exporters/codeable_concept_simple.py	93	Build one FHIR R4 Coding dict. Args: system: A short vocabulary id or an already-canonical syst	STRING
HIGH	openmed/clinical/exporters/codeable_concept_simple.py	124	Build an R4-shaped CodeableConcept from one or more Codings. Codings are ordered deterministically by *system_prior	STRING
HIGH	openmed/clinical/exporters/fhir/operation_outcome.py	113	Build an R4 ``OperationOutcome`` from an iterable of issues. Args: issues: An iterable of issue-like items,	STRING
HIGH	openmed/clinical/exporters/fhir/provenance.py	34	Translate an OpenMed audit report into an R4 ``Provenance`` resource. Args: audit_report: Signed OpenMed au	STRING
HIGH	openmed/eval/frontier.py	453	Assemble one :class:`FrontierPoint` from already-measured reports. Throughput is read from a :class:`~openmed.eval.	STRING
HIGH	openmed/eval/flaky.py	287	Detect flaky benchmark metrics by repeating the same scoring callable. Args: run_callable: Zero-argument ca	STRING
HIGH	openmed/eval/suites/multimodal_dicom.py	216	Generate a deterministic synthetic burned-in-PHI DICOM corpus. Each case writes a single-frame phantom DICOM with s	STRING
HIGH	openmed/eval/suites/multimodal_dicom.py	265	Score the DICOM redaction path over the synthetic corpus. Generates (or reuses) the synthetic corpus, runs the real	STRING
HIGH	openmed/eval/datasets/i2b2.py	183	Load i2b2 de-identification XML files from a credentialed directory. Args: path: Approved local directory c	STRING
HIGH	openmed/risk/kanon.py	73	Measure k-anonymity, l-diversity and t-closeness for ``records``. Args: records: Tabular records in any sha	STRING
HIGH	examples/gradio_deid_app.py	78	De-identify text with method and adapt the result for the UI. This wraps the public :func:`openmed.deidentify`	STRING

Excessive Try-Catch Wrapping157 hits · 169 pts

Severity	File	Line	Snippet	Context
LOW	openmed/__init__.py	324	except Exception:	CODE
LOW	openmed/__init__.py	329	except Exception:	CODE
LOW	openmed/__init__.py	602	except Exception as exc: # pragma: no cover	CODE
LOW	openmed/core/safety_sweep.py	66	except Exception:	CODE
LOW	openmed/core/models.py	215	except Exception as e:	CODE
LOW	openmed/core/models.py	248	except Exception:	CODE
LOW	openmed/core/models.py	352	except Exception as e:	CODE
LOW	openmed/core/models.py	468	except Exception as exc:	CODE
LOW	openmed/core/models.py	491	except Exception as exc:	CODE
LOW⚡	openmed/core/models.py	697	except Exception:	CODE
LOW⚡	openmed/core/models.py	705	except Exception:	CODE
LOW⚡	openmed/core/models.py	715	except Exception:	CODE
LOW	openmed/core/surrogate_vault.py	823	except Exception:	CODE
LOW	openmed/core/arbitration.py	337	except Exception:	CODE
LOW	openmed/core/pipeline.py	1241	except Exception as exc:	CODE
LOW	openmed/core/pipeline.py	1904	except Exception:	CODE
LOW	openmed/core/hf_publish.py	709	except Exception as exc:	CODE
MEDIUM	openmed/core/hf_publish.py	694	def _load_hf_api() -> Any:	CODE
LOW	openmed/core/detector_plugins.py	269	except Exception as exc: # pragma: no cover - importlib defensive guard	CODE
LOW	openmed/core/detector_plugins.py	282	except Exception as exc:	CODE
LOW	openmed/core/doctor.py	97	except Exception:	CODE
LOW	openmed/core/cascade.py	348	except Exception:	CODE
LOW	openmed/core/anonymizer/engine.py	211	except Exception as exc: # noqa: BLE001 — never let a single label kill the doc	CODE
LOW	openmed/ner/families/gliner2.py	152	except Exception: # pragma: no cover - defensive path	CODE
LOW	openmed/ner/families/gliner.py	107	except Exception: # pragma: no cover - defensive path	CODE
LOW	openmed/onnx/convert.py	678	except Exception as exc:	CODE
LOW	openmed/onnx/convert.py	861	except Exception as exc: # pragma: no cover - depends on runtime kernels.	CODE
LOW	openmed/onnx/convert.py	1013	except Exception as exc: # pragma: no cover - depends on optional ORT tools.	CODE
LOW	openmed/onnx/convert.py	1203	except Exception as exc: # pragma: no cover - depends on runtime profiling.	CODE
LOW	openmed/onnx/convert.py	1345	except Exception:	CODE
LOW	openmed/onnx/ort_mobile.py	113	except Exception as exc:	CODE
LOW	openmed/onnx/openvino_export.py	546	except Exception:	CODE
MEDIUM	openmed/onnx/openvino_export.py	481	def _openvino_conversion_api() -> tuple[Any, Any]:	CODE
LOW	openmed/processing/object_storage.py	297	except Exception as exc:	CODE
LOW	openmed/processing/object_storage.py	377	except Exception as exc:	CODE
LOW	openmed/processing/object_storage.py	386	except Exception as exc:	CODE
MEDIUM	openmed/processing/object_storage.py	203	def _import_fsspec() -> Any:	CODE
LOW	openmed/processing/batch.py	589	except Exception as e:	CODE
LOW	openmed/processing/batch.py	598	except Exception as e:	CODE
LOW	openmed/processing/batch.py	705	except Exception as e:	CODE
LOW	openmed/processing/batch.py	761	except Exception as e:	CODE
LOW	openmed/processing/display.py	52	except Exception:	CODE
LOW	openmed/processing/display.py	75	except Exception:	CODE
LOW	openmed/processing/display.py	86	except Exception:	CODE
LOW⚡	openmed/processing/display.py	444	except Exception:	CODE
LOW⚡	openmed/processing/display.py	450	except Exception:	CODE
LOW⚡	openmed/processing/display.py	455	except Exception:	CODE
LOW	openmed/processing/kafka_connector.py	657	except Exception as exc: # pragma: no cover - defensive logging branch	CODE
LOW	openmed/processing/pulsar_connector.py	127	except Exception as exc: # pragma: no cover - exercised by real client users	CODE
LOW	openmed/processing/outputs.py	196	except Exception:	CODE
LOW	openmed/interop/fhir_operations.py	412	except Exception:	CODE
LOW	openmed/interop/polars_accessor.py	282	except Exception:	CODE
MEDIUM	openmed/interop/polars_accessor.py	279	def _namespace_registered() -> bool:	CODE
LOW	openmed/interop/duckdb_udf.py	249	except Exception:	STRING
LOW	openmed/interop/omop/cdm_loader.py	1243	except Exception:	CODE
LOW	openmed/torch/attention.py	115	except Exception:	CODE
MEDIUM	openmed/torch/attention.py	91	def _flash_attention_2_is_available() -> bool:	CODE
LOW	openmed/torch/device.py	95	except Exception:	CODE
LOW	openmed/torch/device.py	107	except Exception:	CODE
LOW	openmed/torch/device.py	118	except Exception:	CODE
97 more matches not shown…

Deep Nesting117 hits · 106 pts

Severity	File	Line	Context
LOW	openmed/__init__.py	181	CODE
LOW	openmed/__init__.py	467	CODE
LOW	openmed/core/result_cache.py	60	CODE
LOW	openmed/core/config.py	209	CODE
LOW	openmed/core/policy.py	541	CODE
LOW	openmed/core/pii_entity_merger.py	568	CODE
LOW	openmed/core/pii_entity_merger.py	651	CODE
LOW	openmed/core/pii_entity_merger.py	712	CODE
LOW	openmed/core/custom_recognizer.py	394	CODE
LOW	openmed/core/policy_lint.py	248	CODE
LOW	openmed/core/hf_publish.py	167	CODE
LOW	openmed/core/pii_i18n.py	789	CODE
LOW	openmed/core/pii_i18n.py	985	CODE
LOW	openmed/core/manifest_schema.py	155	CODE
LOW	openmed/core/manifest_schema.py	497	CODE
LOW	openmed/core/pii.py	458	CODE
LOW	openmed/core/pii.py	2032	CODE
LOW	openmed/core/pii.py	2554	CODE
LOW	openmed/core/decoding/viterbi.py	265	CODE
LOW	openmed/core/decoding/viterbi.py	364	CODE
LOW	openmed/ner/indexing.py	297	CODE
LOW	openmed/onnx/convert.py	1090	CODE
LOW	openmed/processing/tokenization.py	308	CODE
LOW	openmed/processing/kafka_connector.py	92	CODE
LOW	openmed/processing/outputs.py	563	CODE
LOW	openmed/processing/outputs.py	125	CODE
LOW	openmed/processing/outputs.py	526	CODE
LOW	openmed/training/active_learning.py	492	CODE
LOW	openmed/training/distill.py	462	CODE
LOW	openmed/training/distill.py	864	CODE
LOW	openmed/interop/fhir_operations.py	351	CODE
LOW	openmed/interop/cdm_etl.py	371	CODE
LOW	openmed/interop/cdm_etl.py	323	CODE
LOW	openmed/interop/philter.py	175	CODE
LOW	openmed/interop/pydeid.py	158	CODE
LOW	openmed/interop/cda.py	315	CODE
LOW	openmed/interop/cda.py	351	CODE
LOW	openmed/interop/athena.py	56	CODE
LOW	openmed/interop/athena.py	180	CODE
LOW	openmed/interop/omop/cdm_loader.py	771	CODE
LOW	openmed/mcp/tool_registry.py	278	CODE
LOW	openmed/mcp/tool_registry.py	408	CODE
LOW	openmed/mcp/workflow.py	142	CODE
LOW	openmed/cli/active_learning.py	88	CODE
LOW	openmed/cli/main.py	1339	CODE
LOW	openmed/cli/main.py	2017	CODE
LOW	openmed/cli/main.py	2070	CODE
LOW	openmed/coreml/convert.py	914	CODE
LOW	openmed/integrations/columnar_redactor.py	868	CODE
LOW	openmed/multimodal/documents_markdown.py	447	CODE
LOW	openmed/multimodal/documents_markdown.py	939	CODE
LOW	openmed/multimodal/documents_docx.py	294	CODE
LOW	openmed/multimodal/documents_docx.py	325	CODE
LOW	openmed/multimodal/documents_pdf.py	63	CODE
LOW	openmed/multimodal/ocr.py	412	CODE
LOW	openmed/multimodal/dicom.py	1033	CODE
LOW	openmed/multimodal/dicom.py	1115	CODE
LOW	openmed/clinical/summary_card.py	233	CODE
LOW	openmed/clinical/grounding/vocab.py	622	CODE
LOW	openmed/clinical/grounding/vocab.py	662	CODE
57 more matches not shown…

AI Structural Patterns65 hits · 56 pts

Severity	File	Line	Context
LOW	openmed/__init__.py	181	CODE
LOW	openmed/core/arbitration.py	222	CODE
LOW	openmed/core/pipeline.py	233	CODE
LOW	openmed/core/pipeline.py	309	CODE
LOW	openmed/core/model_search.py	53	CODE
LOW	openmed/core/hf_publish.py	226	CODE
LOW	openmed/core/streaming.py	54	CODE
LOW	openmed/core/pii.py	739	CODE
LOW	openmed/core/pii.py	852	CODE
LOW	openmed/core/pii.py	1464	CODE
LOW	openmed/core/pii.py	1721	CODE
LOW	openmed/core/pii.py	1815	CODE
LOW	openmed/core/cascade.py	54	CODE
LOW	openmed/ner/infer.py	118	CODE
LOW	openmed/onnx/convert.py	338	CODE
LOW	openmed/onnx/convert.py	799	CODE
LOW	openmed/processing/object_storage.py	92	CODE
LOW	openmed/processing/batch.py	856	CODE
LOW	openmed/processing/batch.py	236	CODE
LOW	openmed/processing/kafka_connector.py	92	CODE
LOW	openmed/training/distill.py	356	CODE
LOW	openmed/training/distill.py	609	CODE
LOW	openmed/training/synthetic/translation_augment.py	190	CODE
LOW	openmed/torch/quantize_gptq.py	33	CODE
LOW	openmed/torch/quantize_awq.py	36	CODE
LOW	openmed/mcp/server.py	109	CODE
LOW	openmed/mcp/server.py	213	CODE
LOW	openmed/cli/typer_app.py	96	CODE
LOW	openmed/coreml/convert.py	164	CODE
LOW	openmed/coreml/convert.py	735	CODE
LOW	openmed/integrations/spark_streaming.py	140	CODE
LOW	openmed/integrations/lakehouse_redact.py	324	CODE
LOW	openmed/integrations/columnar_redactor.py	231	CODE
LOW	openmed/multimodal/tabular_csv.py	302	CODE
LOW	openmed/multimodal/chatlog_jsonl.py	206	CODE
LOW	openmed/multimodal/chatlog_jsonl.py	280	CODE
LOW	openmed/multimodal/dicom.py	393	CODE
LOW	openmed/multimodal/image.py	202	CODE
LOW	openmed/eval/release_gates.py	442	CODE
LOW	openmed/eval/fairness.py	482	CODE
LOW	openmed/eval/metrics.py	1141	CODE
LOW	openmed/eval/metrics.py	1527	CODE
LOW	openmed/eval/harness.py	810	CODE
LOW	openmed/eval/harness.py	1081	CODE
LOW	openmed/eval/harness.py	1282	CODE
LOW	openmed/eval/harness.py	1323	CODE
LOW	openmed/eval/harness.py	1355	CODE
LOW	openmed/eval/robustness.py	395	CODE
LOW	openmed/eval/robustness.py	524	CODE
LOW	openmed/eval/quant_delta.py	324	CODE
LOW	openmed/eval/calibrate.py	634	CODE
LOW	openmed/eval/calibrate.py	715	CODE
LOW	openmed/eval/calibrate.py	941	CODE
LOW	openmed/eval/suites/multimodal_dicom.py	252	CODE
LOW	openmed/eval/datasets/biomedical_ner.py	367	CODE
LOW	openmed/eval/attacks/reid.py	64	CODE
LOW	openmed/service/client.py	233	CODE
LOW	openmed/service/client.py	293	CODE
LOW	openmed/service/client.py	330	CODE
LOW	openmed/service/client.py	371	CODE
5 more matches not shown…

Cross-Language Confusion (JS/TS)6 hits · 42 pts

Severity	File	Line	Snippet	Context
HIGH⚡	docs/website/assets/script.js	292	print(entity.label, entity.text, entity.confidence)	CODE
HIGH⚡	docs/website/assets/script.js	295	print(deid.deidentified_text)`,	CODE
HIGH⚡	docs/website/assets/script.js	305	print(entity.label, entity.text, entity.confidence)	CODE
HIGH⚡	docs/website/assets/script.js	308	print(deid.deidentified_text)`,	CODE
HIGH⚡	docs/website/assets/script.js	318	print(f"{e['entity_group']:16} {e['word']:32} score={e['score']:.2f}")`,	CODE
HIGH	docs/website/assets/script.js	333	print(entity.label, entity.text, entity.confidence)	CODE

Cross-File Repetition7 hits · 35 pts

Severity	File	Snippet	Context
HIGH	openmed/eval/utility.py	return a json-serializable report dictionary with stable keys.	STRING
HIGH	openmed/eval/error_analysis.py	return a json-serializable report dictionary with stable keys.	STRING
HIGH	openmed/eval/report.py	return a json-serializable report dictionary with stable keys.	STRING
HIGH	openmed/eval/datasets/cmeee.py	load deft records from an explicit local path. openmed does not bundle deft corpus text. pass a local path to data you a	STRING
HIGH	openmed/eval/datasets/pharmaconer.py	load deft records from an explicit local path. openmed does not bundle deft corpus text. pass a local path to data you a	STRING
HIGH	openmed/eval/datasets/cantemist.py	load deft records from an explicit local path. openmed does not bundle deft corpus text. pass a local path to data you a	STRING
HIGH	openmed/eval/datasets/deft.py	load deft records from an explicit local path. openmed does not bundle deft corpus text. pass a local path to data you a	STRING

Modern AI Meta-Vocabulary5 hits · 18 pts

Severity	File	Line	Snippet	Context
MEDIUM	openmed/core/pii_entity_merger.py	546	# Extract context window	COMMENT
MEDIUM⚡	openmed/cli/typer_app.py	228	# zero-shot (GLiNER/GLiNER2)	COMMENT
MEDIUM	tests/run-tests.sh	13	# Core test suite without slow markers (collect coverage for zero-shot modules)	COMMENT
MEDIUM	tests/unit/ner/__init__.py	1	# Unit tests for the zero-shot NER toolkit.	COMMENT
MEDIUM⚡	tests/unit/cli/test_false_negative_explorer_cli.py	165	# Span text and a surrounding-context window are surfaced from the fixture.	COMMENT

AI Slop Vocabulary3 hits · 10 pts

Severity	File	Line	Snippet	Context
MEDIUM	openmed/eval/suites/multimodal_dicom.py	72	#: Device tier reported for pixel-space (image) PHI in the harness slices.	COMMENT
LOW⚡	tests/unit/core/test_anonymizer.py	201	# If the original isn't an email, just return the fake.	COMMENT
MEDIUM⚡	tests/unit/eval/test_multimodal_dicom_suite.py	270	# Report renders to the harness's Markdown/JSON surfaces.	COMMENT

Redundant / Tautological Comments5 hits · 8 pts

Severity	File	Line	Snippet	Context
LOW	openmed/core/models.py	506	# Check if it's a registry key	COMMENT
LOW	openmed/core/models.py	511	# Check if it needs org prefix	COMMENT
LOW	openmed/processing/advanced_ner.py	619	# Check if same entity type and close proximity	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	669	# Check if we have token-level data (no aggregation_strategy used)	COMMENT
LOW	openmed/processing/outputs.py	341	# Check if entities are adjacent and same label	COMMENT

Verbosity Indicators3 hits · 7 pts

Severity	File	Line	Snippet	Context
LOW⚡	openmed/processing/advanced_ner.py	667	# Step 1: Smart grouping if requested and we have token-level output	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	689	# Step 2: Advanced filtering	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	692	# Step 3: Merge adjacent entities if enabled	COMMENT

Structural Annotation Overuse3 hits · 7 pts

Severity	File	Line	Snippet	Context
LOW⚡	openmed/processing/advanced_ner.py	667	# Step 1: Smart grouping if requested and we have token-level output	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	689	# Step 2: Advanced filtering	COMMENT
LOW⚡	openmed/processing/advanced_ner.py	692	# Step 3: Merge adjacent entities if enabled	COMMENT

Self-Referential Comments1 hit · 4 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/unit/test_profiles.py	148	# Create a custom profile	COMMENT

Over-Commented Block4 hits · 4 pts

Severity	File	Line	Snippet	Context
LOW	openmed/core/name_order.py	41		COMMENT
LOW	openmed/core/data/clinical_protect_terms.txt	1	# OpenMed clinical protection terms v1	COMMENT
LOW	docs/security/pip-audit-ignore.toml	1	# Time-boxed pip-audit ignores.	COMMENT
LOW	swift/OpenMedKit/Sources/OpenMedKit/OpenMedKit.swift	1	import CryptoKit	COMMENT

Cross-Language Confusion1 hit · 2 pts

Severity	File	Line	Snippet	Context
HIGH	openmed/eval/quant_delta.py	412	"""Return KL(reference \|\| candidate) over fixed-seed token frequencies."""	STRING

Overly Generic Function Names2 hits · 2 pts

Severity	File	Line	Snippet	Context
LOW	tests/unit/test_profiling.py	264	def my_function():	CODE
LOW	tests/unit/service/test_rest_client.py	41	def handle_request(self, request: httpx.Request) -> httpx.Response:	CODE

Analysis Overview

What These Metrics Mean

Score History

Severity Breakdown

Directory Score Breakdown

Pattern Findings