Repository Analysis

Yuan1z0825/nature-skills

符合nature论文学术表达和科研绘图的Skill

12.3 Low AI signal View on GitHub

Analysis Overview

This report presents the forensic synthetic code analysis of Yuan1z0825/nature-skills, a Python project with 37,642 GitHub stars. SynthScan v2.0 examined 89,416 lines of code across 671 source files, recording 843 pattern matches distributed across 19 syntactic categories. The overall adjusted score of 12.3 places this repository in the Low AI signal band.

The scanner applied 160+ deterministic lexical heuristics, multi-line block detectors, abstract syntax tree depth profilers, and a cross-file Jaccard similarity matrix to construct a statistically normalised synthetic code estimate. All matches are individually weighted by severity coefficient and contextual multiplier before summation, and the resulting headline score is temporally discounted to account for the repository's development history relative to the commercial emergence of large language model coding tooling (November 2022 onward).

12.3
Adjusted Score
12.3
Raw Score
100%
Time Factor
2026-08-28
Last Push
37.6K
Stars
Python
Language
89.4K
Lines of Code
671
Files
843
Pattern Hits
2026-08-29
Scan Date
0.04
HC Hit Rate

What These Metrics Mean

Adjusted Score
Primary synthetic code indicator. Raw score normalised per 1,000 lines of code and multiplied by the temporal discount factor. This is the definitive comparative metric — use it to rank repositories by AI authorship density.
Raw Score
The unmodified sum of all severity-weighted, context-multiplied pattern match scores before temporal discounting. Reflects the absolute signal strength independent of when the repository was last active.
Time Factor
The temporal discount multiplier (0–100%) applied to the raw score. Repositories last updated before ChatGPT's launch (Nov 2022) receive a 5% factor. Full signal is only assigned to repositories active in the post-adoption era (Jan 2024+).
Pattern Hits
Total count of individual pattern matches across all files and categories. A high hit count with a low score may indicate a very large codebase with isolated AI snippets; a low count with a high score indicates dense, concentrated AI signatures.
HC Hit Rate
High+Critical pattern hits per file, averaged across the repository. This orthogonal signal catches repositories where a few files are densely packed with high-severity AI tells — a strong indicator even when the normalised score appears moderate due to codebase size.
Lines of Code / Files
Total lines and files analysed. The scanner examines 94 file extensions. These denominators are used to normalise the score, enabling fair comparison between repositories of vastly different sizes.

Score History

This chart maps the temporal evolution of the adjusted synthetic code score across successive scan runs. An upward trajectory indicates ongoing incorporation of AI-generated code or expanding LLM-assisted scaffolding; a stable or declining trajectory may reflect active human refactoring, code removal, or the adoption of stricter authorship policies. The dashed secondary line (right axis) independently tracks total raw pattern hit count, which can diverge from the normalised score when codebase size changes significantly between scans.

Severity Breakdown

Classifies detected patterns by their diagnostic confidence and structural impact. CRITICAL patterns (coefficient 10) represent definitive synthetic signatures — hallucinated imports, explicit LLM attribution metadata — virtually never produced by human authors. HIGH (5) indicates strong structural tells such as cross-file repetition or cross-linguistic idioms. MEDIUM (2) covers recognisable conversational padding and AI-specific vocabulary. LOW (1) captures subtle indicators like tautological comments and generic boilerplate that require density to carry independent signal.

CRITICAL 0HIGH 24MEDIUM 65LOW 754

Directory Score Breakdown

This horizontal bar chart decomposes the repository's raw synthetic code score by top-level directory, allowing you to pinpoint precisely which modules or components carry the highest AI authorship density. Directories with disproportionately high scores relative to their size warrant targeted manual review: concentrated AI signatures often trace back to mass-generated configuration layers, auto-ported test suites, LLM-scaffolded boilerplate classes, or entire subsystems authored under heavy copilot assistance. Use this view to prioritise your human code-review effort.

Pattern Findings

The scanner identified 843 distinct pattern matches across 19 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a statistically significant AI authorship indicator. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.

Reading the findings table: The Severity column indicates the diagnostic confidence level (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — comment-context matches receive a ×1.5 weight because LLMs systematically over-annotate. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier as dense clusters constitute far stronger evidence of synthetic authorship than isolated hits.

Hyper-Verbose Identifiers423 hits · 427 pts
SeverityFileLineSnippetContext
LOWtests/test_generate_star_history.py18 def test_empty_repository_has_no_daily_points(self):CODE
LOWtests/test_generate_star_history.py21 def test_missing_timestamp_does_not_produce_a_chart(self):CODE
LOWtests/test_generate_star_history.py26 def test_invalid_timestamp_does_not_produce_a_chart(self):CODE
LOWtests/test_generate_star_history.py31 def test_valid_timestamps_are_sorted_and_accumulated(self):CODE
LOWtests/test_generate_star_history.py46 def test_valid_records_allow_star_count_changes_during_fetch(self):CODE
LOWtests/test_generate_star_history.py53 def test_empty_svg_is_valid_for_zero_stars(self):CODE
LOWtests/test_generate_star_history.py59 def test_zero_star_fetch_skips_stargazer_request(self):CODE
LOWtests/test_generate_star_history.py64 def test_unusable_api_response_keeps_existing_chart(self):CODE
LOWtests/test_generate_star_history.py82 def test_small_chart_has_integer_y_ticks(self):CODE
LOWscripts/validate-workflows.py50def local_scripts_from_run_steps(workflow: dict[str, Any]) -> set[str]:CODE
LOWscripts/validate-workflows.py71def external_action_references(workflow: dict[str, Any]) -> set[str]:CODE
LOWscripts/generate-star-history.py388def remove_old_versioned_outputs(output: pathlib.Path, keep: pathlib.Path) -> None:STRING
LOWscripts/generate-star-history.py399def update_readme_cache_buster(STRING
LOWscripts/validate-repository.py59def validate_structured_configs(skills: list[pathlib.Path]) -> list[ValidationError]:CODE
LOWscripts/validate-repository.py76def validate_reference_navigation(skills: list[pathlib.Path]) -> list[ValidationError]:CODE
LOWscripts/tests/test_validate_skill_metadata.py30 def test_supported_metadata_is_valid(self) -> None:CODE
LOWscripts/tests/test_validate_skill_metadata.py45 def test_legacy_version_and_author_are_rejected(self) -> None:CODE
LOWscripts/tests/test_validate_skill_metadata.py58 def test_required_fields_must_be_non_empty(self) -> None:CODE
LOWscripts/tests/test_validate_skill_metadata.py71 def test_frontmatter_requires_a_closing_fence(self) -> None:CODE
LOWscripts/tests/test_validate_skill_metadata.py96 def test_complete_quoted_interface_is_valid(self) -> None:CODE
LOWscripts/tests/test_validate_skill_metadata.py106 def test_default_prompt_must_name_the_skill(self) -> None:CODE
LOWscripts/tests/test_validate_skill_metadata.py116 def test_interface_strings_must_be_quoted(self) -> None:CODE
LOWscripts/tests/test_validate_skill_metadata.py126 def test_support_only_skill_must_disable_implicit_invocation(self) -> None:CODE
LOWscripts/tests/test_validate_skill_metadata.py153 def test_support_only_skill_accepts_explicit_disablement(self) -> None:STRING
LOWscripts/tests/test_validate_workflows.py37 def test_mutable_version_tag_is_rejected(self) -> None:STRING
LOWscripts/tests/test_validate_workflows.py41 def test_full_commit_sha_is_accepted(self) -> None:STRING
LOWscripts/tests/test_validate_workflows.py47 def test_local_action_is_accepted(self) -> None:STRING
LOWscripts/tests/test_nature_abstract_guidance.py20 def test_guidance_is_corpus_derived_not_official_policy(self) -> None:CODE
LOWscripts/tests/test_nature_abstract_guidance.py29 def test_guidance_centres_the_discovery_evidence_chain(self) -> None:CODE
LOWscripts/tests/test_nature_abstract_guidance.py43 def test_numeric_and_payoff_rules_are_selective(self) -> None:CODE
LOWscripts/tests/test_nature_abstract_guidance.py56 def test_writing_and_polishing_routes_load_shared_guidance(self) -> None:CODE
LOWscripts/tests/test_nature_abstract_guidance.py71 def test_section_fragments_do_not_require_decorative_numbers(self) -> None:CODE
LOW…ripts/tests/test_nature_results_discussion_guidance.py20 def test_guidance_is_corpus_derived_not_official_policy(self) -> None:CODE
LOW…ripts/tests/test_nature_results_discussion_guidance.py30 def test_results_claim_escalation_and_local_interpretation_are_operational(self) -> None:CODE
LOW…ripts/tests/test_nature_results_discussion_guidance.py44 def test_mixed_nature_corpus_supports_evidence_chain_archetypes(self) -> None:CODE
LOW…ripts/tests/test_nature_results_discussion_guidance.py60 def test_discussion_synthesizes_without_redemonstrating(self) -> None:CODE
LOW…ripts/tests/test_nature_results_discussion_guidance.py75 def test_writing_and_polishing_routes_load_shared_guidance(self) -> None:CODE
LOW…ripts/tests/test_nature_results_discussion_guidance.py90 def test_routes_cover_all_nature_portfolio_targets(self) -> None:CODE
LOW…ripts/tests/test_nature_results_discussion_guidance.py107 def test_old_facts_only_split_is_not_enforced(self) -> None:CODE
LOWscripts/tests/test_nature_figure_multipanel_evidence.py21 def test_guidance_is_corpus_derived_not_official_policy(self) -> None:CODE
LOWscripts/tests/test_nature_figure_multipanel_evidence.py32 def test_one_figure_claim_and_role_diversity_are_operational(self) -> None:CODE
LOWscripts/tests/test_nature_figure_multipanel_evidence.py46 def test_placement_and_cross_figure_claim_escalation_are_explicit(self) -> None:CODE
LOWscripts/tests/test_nature_figure_multipanel_evidence.py61 def test_corpus_examples_are_preserved_as_reasoning_anchors(self) -> None:CODE
LOWscripts/tests/test_nature_figure_multipanel_evidence.py75 def test_router_manifest_contract_and_shared_results_are_connected(self) -> None:CODE
LOWscripts/tests/test_nature_figure_multipanel_evidence.py93 def test_bilingual_docs_and_eval_expose_the_workflow(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py188 def test_three_and_four_horizontal_equal_width_panels_pass(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py195 def test_three_and_four_horizontal_unequal_width_panels_block(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py204 def test_horizontal_width_check_compares_only_equal_grid_spans(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py210 def test_intentional_horizontal_width_exception_requires_panel_width_reason(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py60def asymmetric_vertical_manifest(spanning_side: str) -> dict[str, object]:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py114 def test_single_panel_is_not_applicable_and_nonblocking(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py125 def test_aligned_two_by_two_grid_passes(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py133 def test_shifted_panel_blocks_row_and_column_alignment(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py145 def test_left_two_right_one_and_left_one_right_two_pass(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py158 def test_shifted_spanning_panel_blocks_shared_outer_edges(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py176 def test_spanning_layout_panel_labels_follow_the_shared_top_edge(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py225 def test_unequal_gutters_block_delivery(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py245 def test_asymmetric_hero_panel_uses_only_valid_shared_edges(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py262 def test_exemption_requires_reason_and_can_remove_an_inset(self) -> None:CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py290 def test_diagnostic_svg_and_json_are_written(self) -> None:CODE
363 more matches not shown…
Decorative Section Separators55 hits · 180 pts
SeverityFileLineSnippetContext
MEDIUM…e-academic-search/mcp-server/academic_search_server.py645# ---------------------------------------------------------------------------COMMENT
MEDIUM…e-academic-search/mcp-server/academic_search_server.py647# ---------------------------------------------------------------------------COMMENT
MEDIUM…e-academic-search/mcp-server/academic_search_server.py36# ---------------------------------------------------------------------------COMMENT
MEDIUM…e-academic-search/mcp-server/academic_search_server.py38# ---------------------------------------------------------------------------COMMENT
MEDIUM…e-academic-search/mcp-server/academic_search_server.py83# ---------------------------------------------------------------------------COMMENT
MEDIUM…e-academic-search/mcp-server/academic_search_server.py85# ---------------------------------------------------------------------------COMMENT
MEDIUM…e-academic-search/mcp-server/academic_search_server.py159# ---------------------------------------------------------------------------COMMENT
MEDIUM…e-academic-search/mcp-server/academic_search_server.py161# ---------------------------------------------------------------------------COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py44# ===================================================================COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py46# ===================================================================COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py221# ===================================================================COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py223# ===================================================================COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py671# ===================================================================COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py673# ===================================================================COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py15# ---------------------------------------------------------------------------COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py17# ---------------------------------------------------------------------------COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py464# ===================================================================COMMENT
MEDIUM…ature-academic-search/mcp-server/tests/test_sources.py466# ===================================================================COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py34 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py36 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py114 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py116 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py164 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py166 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py216 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py218 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py294 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py296 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py319# ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/mcp-server/sources/arxiv.py321# ------------------------------------------------------------------COMMENT
MEDIUM…/nature-academic-search/mcp-server/sources/crossref.py26 # ------------------------------------------------------------------COMMENT
MEDIUM…/nature-academic-search/mcp-server/sources/crossref.py28 # ------------------------------------------------------------------COMMENT
MEDIUM…/nature-academic-search/mcp-server/sources/crossref.py109 # ------------------------------------------------------------------COMMENT
MEDIUM…/nature-academic-search/mcp-server/sources/crossref.py111 # ------------------------------------------------------------------COMMENT
MEDIUM…/nature-academic-search/mcp-server/sources/crossref.py137 # ------------------------------------------------------------------COMMENT
MEDIUM…/nature-academic-search/mcp-server/sources/crossref.py139 # ------------------------------------------------------------------COMMENT
MEDIUM…lls/nature-academic-search/scripts/format-converter.py48# ── PubMed ──────────────────────────────────────────────────────COMMENT
MEDIUM…lls/nature-academic-search/scripts/format-converter.py121# ── CrossRef ────────────────────────────────────────────────────COMMENT
MEDIUM…lls/nature-academic-search/scripts/format-converter.py159# ── arXiv ───────────────────────────────────────────────────────COMMENT
MEDIUM…lls/nature-academic-search/scripts/format-converter.py197# ── Input parsing ───────────────────────────────────────────────COMMENT
MEDIUM…lls/nature-academic-search/scripts/format-converter.py295# ── Main ────────────────────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py66# ── MEDLINE -> RIS ──────────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py126# ── MEDLINE -> BibTeX ────────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py177# ── CrossRef JSON -> RIS ─────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py238# ── CrossRef JSON -> BibTeX ──────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py297# ── arXiv XML -> RIS ─────────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py352# ── arXiv XML -> BibTeX ──────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py410# ── MEDLINE -> ENW ───────────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py454# ── CrossRef JSON -> ENW ──────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py505# ── arXiv XML -> ENW ──────────────────────────────────────────────COMMENT
MEDIUMskills/nature-academic-search/scripts/converters.py556# ── Format dispatch ─────────────────────────────────────────────COMMENT
MEDIUMskills/nature-figure/references/api.md154 # ── MANDATORY: editable SVG text ──────────────────────────────────────────COMMENT
MEDIUMskills/nature-figure/references/api.md158 # ── Layout & style ────────────────────────────────────────────────────────COMMENT
MEDIUMskills/nature-figure/references/design-theory.md361# ── PRIMARY ── editable vector, text as <text> nodes ─────────────────────────COMMENT
MEDIUMskills/nature-figure/references/design-theory.md364# ── SECONDARY ── raster for quick preview / submission portals ────────────────COMMENT
Unused Imports144 hits · 140 pts
SeverityFileLineSnippetContext
LOWscripts/validate-readme-mirror.py11CODE
LOWscripts/validate-readme-mirror.py14CODE
LOWscripts/validate-workflows.py10CODE
LOWscripts/validate-readmes.py4CODE
LOWscripts/validate-skill-metadata.py14CODE
LOWscripts/validate-skill-metadata.py17CODE
LOWscripts/update-reference-tocs.py4CODE
LOWscripts/generate-star-history.py4CODE
LOWscripts/validate-repository.py10CODE
LOWscripts/validate-skill-index.py10CODE
LOWscripts/validate-skill-index.py13CODE
LOWscripts/tests/test_validate_skill_metadata.py1CODE
LOWscripts/tests/test_validate_workflows.py1CODE
LOWscripts/tests/test_nature_abstract_guidance.py1CODE
LOW…ripts/tests/test_nature_results_discussion_guidance.py1CODE
LOWscripts/tests/test_nature_figure_multipanel_evidence.py1CODE
LOWscripts/tests/test_nature_figure_panel_alignment.py1CODE
LOWscripts/tests/test_nature_submission_requirements.py1CODE
LOWscripts/tests/test_discussion_argument_language.py1CODE
LOWscripts/tests/test_nature_introduction_guidance.py1CODE
LOWscripts/tests/test_main_text_discipline.py1CODE
LOW…ipts/tests/test_nature_figure_ai_graphical_abstract.py1CODE
LOWscripts/tests/test_nmi_submission_requirements.py1CODE
LOWscripts/tests/test_nature_figure_collision_audit.py1CODE
LOWscripts/tests/test_generate_star_history.py1CODE
LOWskills/nature-paper-to-patent/tests/test_validation.py2CODE
LOWskills/nature-paper-to-patent/tests/test_validation.py4CODE
LOW…nature-paper-to-patent/scripts/render_flowchart_svg.py366CODE
LOW…ature-paper-to-patent/scripts/disclosure/md_to_docx.py22CODE
LOW…paper-to-patent/scripts/disclosure/cnipa_epub_parse.py7CODE
LOW…r-to-patent/scripts/disclosure/iteration_dialog_log.py5CODE
LOW…e-paper-to-patent/scripts/disclosure/mermaid_render.py27CODE
LOW…ature-paper-to-patent/scripts/disclosure/docx_to_md.py14CODE
LOW…ature-paper-to-patent/scripts/disclosure/pptx_to_md.py14CODE
LOW…aper-to-patent/scripts/disclosure/cnipa_epub_search.py35CODE
LOW…aper-to-patent/scripts/disclosure/cnipa_epub_search.py107CODE
LOW…per-to-patent/scripts/disclosure/cnipa_epub_crawler.py41CODE
LOW…ture-paper-to-patent/scripts/disclosure/math_render.py18CODE
LOWskills/nature-paper2ppt/scripts/audit_pptx_quality.py9CODE
LOWskills/nature-paper2ppt/scripts/audit_pptx_quality.py14CODE
LOWskills/nature-citation/tests/test_author_exports.py1CODE
LOWskills/nature-citation/scripts/nature_citation.py9CODE
LOWskills/nature-downloader/scripts/configure_school.py4CODE
LOWskills/nature-downloader/scripts/configure_school.py16CODE
LOW…lls/nature-downloader/scripts/configure_credentials.py4CODE
LOWskills/nature-downloader/src/config.py7CODE
LOWskills/nature-downloader/src/validators.py11CODE
LOWskills/nature-downloader/src/schools_loader.py6CODE
LOWskills/nature-downloader/src/wizard.py18CODE
LOWskills/nature-downloader/src/wizard.py24CODE
LOWskills/nature-downloader/src/wizard.py25CODE
LOWskills/nature-downloader/src/health_check.py7CODE
LOWskills/nature-downloader/src/health_check.py11CODE
LOW…ills/nature-response/tests/test_package_consistency.py1CODE
LOW…s/nature-response/scripts/check_package_consistency.py4CODE
LOW…s/nature-response/scripts/check_package_consistency.py9CODE
LOW…/nature-image2ppt/tests/test_visual_review_evidence.py1CODE
LOWskills/nature-image2ppt/tests/test_state_e2e.py1CODE
LOW…ills/nature-image2ppt/tests/test_isolated_lifecycle.py1CODE
LOWskills/nature-image2ppt/tests/support.py1CODE
84 more matches not shown…
Cross-Language Confusion17 hits · 102 pts
SeverityFileLineSnippetContext
HIGH…aper-to-patent/scripts/disclosure/cnipa_epub_search.py20需已安装:pip install -r scripts/disclosure/requirements-cnipa.txt && python -m playwright install chromiumSTRING
HIGH…aper-to-patent/scripts/disclosure/cnipa_epub_search.py110 "ERROR: pip install -r scripts/disclosure/requirements-cnipa.txt && python -m playwright install chromium",CODE
HIGHskills/nature-citation/scripts/nature_citation.py2155 const fromYear = Number(yearFromInput.value || 0);CODE
HIGHskills/nature-citation/scripts/nature_citation.py2156 const toYear = Number(yearToInput.value || 0);CODE
HIGHskills/nature-citation/scripts/nature_citation.py2157 const y = Number(year || 0);CODE
HIGHskills/nature-citation/scripts/nature_citation.py2158 if (fromYear && (!y || y < fromYear)) return false;CODE
HIGHskills/nature-citation/scripts/nature_citation.py2159 if (toYear && (!y || y > toYear)) return false;CODE
HIGHskills/nature-citation/scripts/nature_citation.py2037 let currentDownloadUrl = null;CODE
HIGHskills/nature-citation/scripts/nature_citation.py2065 currentDownloadUrl = null;CODE
HIGHskills/nature-citation/scripts/nature_citation.py2091 articles.push(item.zotero_rdf_article);CODE
HIGHskills/nature-citation/scripts/nature_citation.py2093 if (item.journal_resource && item.zotero_rdf_journal && !journals.has(item.journal_resource)) {{CODE
HIGHskills/nature-citation/scripts/nature_citation.py2182 const matches = yearPass(year) && queryPass(searchText) && (!selectedOnlyInput.checked || selectedMap.has(key)CODE
HIGHskills/nature-citation/scripts/nature_citation.py2188 const matches = !selectedOnlyInput.checked && queryPass(card.dataset.segment || '');CODE
HIGHskills/nature-image2ppt/tests/test_render_guard.py28 self.assertLess(script.index("$app=$null;$deck=$null;"), script.index("try{"))CODE
HIGHskills/nature-image2ppt/scripts/render_image2ppt_qa.py85 "$ErrorActionPreference='Stop';$app=$null;$deck=$null;"CODE
HIGHskills/nature-image2ppt/scripts/render_image2ppt_qa.py91 "try{[System.Runtime.InteropServices.Marshal]::ReleaseComObject($deck)|Out-Null}catch{};$deck=$null};"CODE
HIGHskills/nature-image2ppt/scripts/render_image2ppt_qa.py93 "try{[System.Runtime.InteropServices.Marshal]::ReleaseComObject($app)|Out-Null}catch{};$app=$null}"CODE
Excessive Try-Catch Wrapping77 hits · 79 pts
SeverityFileLineSnippetContext
LOWscripts/validate-skill-metadata.py65 except Exception as exc:CODE
LOWscripts/validate-skill-metadata.py103 except Exception as exc:CODE
LOWscripts/validate-skill-metadata.py235 except Exception as exc:CODE
LOWscripts/generate-star-history.py156 except Exception:CODE
LOW…ature-paper-to-patent/scripts/disclosure/md_to_docx.py303 except Exception:CODE
LOW…ature-paper-to-patent/scripts/disclosure/md_to_docx.py328 except Exception:CODE
LOW…e-paper-to-patent/scripts/disclosure/mermaid_render.py238 except Exception as e:CODE
LOW…ature-paper-to-patent/scripts/disclosure/docx_to_md.py74 except Exception as e:CODE
LOW…ature-paper-to-patent/scripts/disclosure/pptx_to_md.py86 except Exception as e:CODE
LOW…ature-paper-to-patent/scripts/disclosure/pptx_to_md.py111 except Exception as e:CODE
MEDIUM…ature-paper-to-patent/scripts/disclosure/pptx_to_md.py21def _require_pptx():CODE
LOW…aper-to-patent/scripts/disclosure/cnipa_epub_search.py127 except Exception as e:CODE
LOW…per-to-patent/scripts/disclosure/cnipa_epub_crawler.py103 except Exception:CODE
LOW…per-to-patent/scripts/disclosure/cnipa_epub_crawler.py107 except Exception:CODE
LOW…per-to-patent/scripts/disclosure/cnipa_epub_crawler.py124 except Exception:CODE
LOW…per-to-patent/scripts/disclosure/cnipa_epub_crawler.py233 except Exception as e:CODE
LOW…ture-paper-to-patent/scripts/disclosure/math_render.py123 except Exception as e:CODE
LOWskills/nature-citation/scripts/nature_citation.py355 except Exception as exc: # noqa: BLE001CODE
LOWskills/nature-citation/scripts/nature_citation.py703 except Exception as exc: # noqa: BLE001CODE
LOWskills/nature-citation/scripts/nature_citation.py1185 except Exception as exc: # noqa: BLE001CODE
LOWskills/nature-citation/scripts/nature_citation.py1317 except Exception as exc: # noqa: BLE001CODE
LOWskills/nature-citation/scripts/nature_citation.py1338 except Exception as exc: # noqa: BLE001CODE
LOWskills/nature-downloader/scripts/extract_pdf_text.py15 except Exception:CODE
LOWskills/nature-downloader/scripts/extract_pdf_text.py61 except Exception:CODE
LOWskills/nature-downloader/src/validators.py100 except Exception as e:CODE
LOWskills/nature-downloader/src/validators.py138 except Exception as e:CODE
LOW…ure-image2ppt/cli/image2ppt/runtime/deck_text_hints.py46 except Exception:CODE
LOW…ure-image2ppt/cli/image2ppt/runtime/deck_text_hints.py124 except Exception as exc:CODE
LOW…ure-image2ppt/cli/image2ppt/runtime/deck_text_hints.py147 except Exception as exc:CODE
MEDIUM…e-image2ppt/cli/image2ppt/runtime/remove_chroma_key.py25 print(f"Error: {message}", file=sys.stderr)CODE
MEDIUM…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py147 print(f"Error: {message}", file=sys.stderr)STRING
LOW…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py250 except Exception:STRING
LOW…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py278 except Exception:STRING
LOW…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py975 except Exception:STRING
LOW…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py993 except Exception:STRING
MEDIUM…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py155def _runtime_env_path() -> Path:CODE
LOW…s/nature-image2ppt/cli/image2ppt/runtime/text_hints.py221 except Exception:CODE
LOW…/nature-image2ppt/cli/image2ppt/runtime/runtime_env.py125 except Exception:CODE
LOW…2ppt/cli/image2ppt/runtime/build_pptx_from_manifest.py975 except Exception:CODE
LOW…2ppt/cli/image2ppt/runtime/build_pptx_from_manifest.py1024 except Exception:CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py564 except Exception as exc:CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py708 except Exception as exc:CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py723 except Exception as exc:CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py743 except Exception as exc:CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py938 except Exception as exc:CODE
MEDIUM…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py145def manifest_schema_version(manifest):CODE
LOW…ls/nature-image2ppt/scripts/inspect_arrow_atomicity.py174 except Exception as exc:CODE
LOWskills/nature-image2ppt/scripts/render_image2ppt_qa.py192 except Exception as exc:CODE
LOW…ature-image2ppt/scripts/postprocess_manifest_arrows.py441 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py314 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py327 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py638 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py207 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py234 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py257 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py288 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py301 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py340 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py384 except Exception as exc:CODE
LOW…e-academic-search/mcp-server/academic_search_server.py401 except Exception as exc:CODE
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Deep Nesting67 hits · 65 pts
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LOWscripts/validate-skill-metadata.py152CODE
LOWscripts/generate-star-history.py86CODE
LOWscripts/validate-repository.py59CODE
LOWscripts/validate-repository.py76CODE
LOW…s/nature-paper-to-patent/scripts/render_patent_docx.py249CODE
LOW…nature-paper-to-patent/scripts/render_flowchart_svg.py30CODE
LOWskills/nature-paper-to-patent/scripts/math_to_omml.py60CODE
LOW…ature-paper-to-patent/scripts/disclosure/md_to_docx.py90CODE
LOW…ature-paper-to-patent/scripts/disclosure/md_to_docx.py527CODE
LOW…ature-paper-to-patent/scripts/disclosure/md_to_docx.py700CODE
LOW…e-paper-to-patent/scripts/disclosure/mermaid_render.py167CODE
LOW…e-paper-to-patent/scripts/disclosure/mermaid_render.py341CODE
LOW…ature-paper-to-patent/scripts/disclosure/pptx_to_md.py65CODE
LOW…ture-paper-to-patent/scripts/disclosure/math_render.py166CODE
LOWskills/nature-citation/scripts/nature_citation.py1328CODE
LOWskills/nature-downloader/src/validators.py19CODE
LOWskills/nature-downloader/src/wizard.py36CODE
LOW…s/nature-response/scripts/check_package_consistency.py57CODE
LOW…ills/nature-image2ppt/tests/test_isolated_lifecycle.py23CODE
LOW…lls/nature-image2ppt/tests/test_multi_agent_backend.py445CODE
LOW…lls/nature-image2ppt/tests/test_multi_agent_backend.py1920CODE
LOWskills/nature-image2ppt/tests/test_independence.py11CODE
LOW…ure-image2ppt/cli/image2ppt/runtime/deck_text_hints.py87CODE
LOW…e-image2ppt/cli/image2ppt/runtime/remove_chroma_key.py263CODE
LOW…e-image2ppt/cli/image2ppt/runtime/remove_chroma_key.py282CODE
LOW…2ppt/cli/image2ppt/runtime/build_pptx_from_manifest.py201CODE
LOW…2ppt/cli/image2ppt/runtime/build_pptx_from_manifest.py219CODE
LOW…2ppt/cli/image2ppt/runtime/build_pptx_from_manifest.py806CODE
LOW…2ppt/cli/image2ppt/runtime/build_pptx_from_manifest.py863CODE
LOW…2ppt/cli/image2ppt/runtime/build_pptx_from_manifest.py892CODE
LOW…2ppt/cli/image2ppt/runtime/build_pptx_from_manifest.py917CODE
LOW…mage2ppt/cli/image2ppt/runtime/_input_normalization.py60CODE
LOW…mage2ppt/cli/image2ppt/runtime/_input_normalization.py108CODE
LOW…mage2ppt/cli/image2ppt/runtime/_input_normalization.py304CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py167CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py335CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py503CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py639CODE
LOW…ature-image2ppt/cli/image2ppt/runtime/validate_pptx.py809CODE
LOW…ge2ppt/cli/image2ppt/runtime/record_imagegen_result.py11CODE
LOW…ge2ppt/cli/image2ppt/runtime/split_alpha_components.py42CODE
LOW…ge2ppt/cli/image2ppt/runtime/split_alpha_components.py113CODE
LOW…ls/nature-image2ppt/scripts/inspect_arrow_atomicity.py96CODE
LOWskills/nature-image2ppt/scripts/render_image2ppt_qa.py116CODE
LOW…ature-image2ppt/scripts/postprocess_manifest_arrows.py370CODE
LOW…ture-image2ppt/scripts/inspect_region_decomposition.py84CODE
LOWskills/nature-reader/scripts/validate_reader_math.py58CODE
LOWskills/nature-shared/scripts/check_consistency.py120CODE
LOWskills/nature-shared/scripts/check_consistency.py253CODE
LOWskills/nature-paper-card/scripts/prepare_paper.py98CODE
LOW…e-academic-search/mcp-server/academic_search_server.py455CODE
LOW…ls/nature-academic-search/mcp-server/sources/pubmed.py67CODE
LOW…lls/nature-academic-search/scripts/format-converter.py224CODE
LOW…ills/nature-academic-search/scripts/academic_search.py210CODE
LOW…ills/nature-academic-search/scripts/academic_search.py304CODE
LOWskills/nature-academic-search/scripts/converters.py19CODE
LOWskills/nature-academic-search/scripts/preflight.py41CODE
LOWskills/nature-figure/scripts/audit_figure_collisions.py215CODE
LOWskills/nature-figure/scripts/audit_figure_collisions.py245CODE
LOWskills/nature-figure/scripts/audit_figure_collisions.py374CODE
7 more matches not shown…
Structural Annotation Overuse29 hits · 44 pts
SeverityFileLineSnippetContext
LOW…ills/nature-proposal-writer/references/compose-mode.md55### Step 1: Intake Q&A → `00_scope.md`COMMENT
LOW…ills/nature-proposal-writer/references/compose-mode.md69### Step 2: Build `01_research_canon.md`COMMENT
LOW…ills/nature-proposal-writer/references/compose-mode.md91### Step 3: Build `02_evidence_table.md`COMMENT
LOW…ills/nature-proposal-writer/references/compose-mode.md110### Step 4: Build `03_argument_map.md`COMMENT
LOW…ills/nature-proposal-writer/references/compose-mode.md130### Step 5: Build `04_section_contracts.md`COMMENT
LOW…ills/nature-proposal-writer/references/compose-mode.md162### Step 6: Foundation reviewCOMMENT
LOW…ills/nature-proposal-writer/references/compose-mode.md172### Step 7: Draft section by sectionCOMMENT
LOW…ills/nature-proposal-writer/references/compose-mode.md188### Step 8: Full proposal QACOMMENT
LOW…ills/nature-proposal-writer/references/compose-mode.md198### Step 9: ExportCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md29### Step 1: Classify the textCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md53### Step 2: Extract claimsCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md73### Step 3: Compare claims with canon/evidenceCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md88### Step 4: Diagnose structureCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md104### Step 5: Professor reviewCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md117### Step 6: Anti-slop scanCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md130### Step 7: Generate revision briefCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md148### Step 8: ReviseCOMMENT
LOWskills/nature-proposal-writer/references/revise-mode.md160### Step 9: RescoreCOMMENT
LOWskills/nature-ref-verifier/SKILL.md28### Step 1: 解析输入COMMENT
LOWskills/nature-ref-verifier/SKILL.md43### Step 2: 多源并行查询COMMENT
LOWskills/nature-ref-verifier/SKILL.md61### Step 3: 字段级对比COMMENT
LOWskills/nature-ref-verifier/SKILL.md96### Step 4: 置信度评估COMMENT
LOWskills/nature-ref-verifier/SKILL.md107### Step 5: 输出报告COMMENT
LOW…/nature-literature-pipeline/references/gap-analysis.md12### Step 1: Multi-source searchCOMMENT
LOW…/nature-literature-pipeline/references/gap-analysis.md21### Step 2: Decompose and classifyCOMMENT
LOW…/nature-literature-pipeline/references/gap-analysis.md37### Step 3: Extract edge papersCOMMENT
LOW…/nature-literature-pipeline/references/gap-analysis.md46### Step 4: Output gap reportCOMMENT
LOW…ls/nature-academic-search/mcp-server/sources/pubmed.py192 # Step 1: esearch to get WebEnv + query_keyCOMMENT
LOW…ls/nature-academic-search/mcp-server/sources/pubmed.py217 # Step 2: efetch to get article detailsCOMMENT
Magic Placeholder Names6 hits · 25 pts
SeverityFileLineSnippetContext
HIGH…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py77 image2ppt config --api-key "your-api-key" --image-backend openai-compatible-api \CODE
HIGH…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py515 'image2ppt config --api-key "your-api-key" 'STRING
HIGH…ls/nature-image2ppt/cli/image2ppt/runtime/image_gen.py520 command = f'image2ppt config --api-key "your-api-key" --model {model}'STRING
HIGHskills/nature-image2ppt/cli/image2ppt/runtime/main.py499 image2ppt config --api-key "your-api-key" --model gpt-image-2CODE
HIGHskills/nature-image2ppt/cli/image2ppt/runtime/main.py500 image2ppt config --api-key "your-api-key" --image-backend openai-compatible-api --base-url https://example.test/v1 --mCODE
HIGHskills/nature-image2ppt/cli/image2ppt/runtime/main.py807 image2ppt config --api-key "your-api-key" --image-backend openai-compatible-api --base-url https://example.test/v1 --mCODE
Over-Commented Block5 hits · 5 pts
SeverityFileLineSnippetContext
LOWscripts/autoupdate-skills.sh1#!/usr/bin/env bashCOMMENT
LOWscripts/autoupdate-skills.sh21# - Cheap: it re-syncs skills only when upstream changed or destination driftCOMMENT
LOWscripts/update-codex-skills.sh1#!/usr/bin/env bashCOMMENT
LOWskills/nature-downloader/data/schools.yaml1# Intentionally empty.COMMENT
LOWskills/nature-image2ppt/config.example.yaml1# Project-level Skill: copy this file to ./config.yaml and fill secrets locally.COMMENT
Modern Structural Boilerplate5 hits · 5 pts
SeverityFileLineSnippetContext
LOW…s/nature-paper-to-patent/scripts/render_patent_docx.py18def set_run_font(run, name: str, size: float, bold: bool = False) -> None:CODE
LOW…ature-image2ppt/scripts/postprocess_manifest_arrows.py141def set_object_name(obj: ET.Element, value: str) -> None:CODE
LOW…ls/nature-academic-search/mcp-server/utils/__init__.py7__all__ = [CODE
LOW…/nature-academic-search/mcp-server/sources/__init__.py9__all__ = [CODE
LOWskills/nature-figure/scripts/figure_safety.py50__all__ = ["interp_monotone", "label_y_above"]CODE
Docstring Block Structure1 hit · 5 pts
SeverityFileLineSnippetContext
HIGH…ls/nature-academic-search/mcp-server/sources/pubmed.py240Fetch a single article by PMID. Args: pmid: PubMed ID (numeric string). Returns: STRING
Modern AI Meta-Vocabulary2 hits · 5 pts
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MEDIUMskills/nature-figure/references/r-workflow.md7- [Contract scaffold](#contract-scaffold)CODE
MEDIUMskills/nature-figure/references/r-workflow.md43## Contract scaffoldCOMMENT
AI Structural Patterns4 hits · 4 pts
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LOW…ture-paper-to-patent/scripts/disclosure/math_render.py70CODE
LOW…re-image2ppt/cli/image2ppt/runtime/formula_renderer.py41CODE
LOW…e-academic-search/mcp-server/academic_search_server.py346CODE
LOW…/figures4papers/figure_Dispersion/plot_illustration.py65CODE
Example Usage Blocks2 hits · 3 pts
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LOWscripts/autoupdate-skills.sh24# Usage:COMMENT
LOWscripts/update-codex-skills.sh18# Usage:COMMENT
Verbosity Indicators2 hits · 3 pts
SeverityFileLineSnippetContext
LOW…ls/nature-academic-search/mcp-server/sources/pubmed.py192 # Step 1: esearch to get WebEnv + query_keyCOMMENT
LOW…ls/nature-academic-search/mcp-server/sources/pubmed.py217 # Step 2: efetch to get article detailsCOMMENT
AI Slop Vocabulary1 hit · 3 pts
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MEDIUM…/figures4papers/figure_Dispersion/plot_illustration.py46 # normalize (robust against tiny numerical drift)COMMENT
Self-Referential Comments1 hit · 3 pts
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MEDIUM…ets/figures4papers/figure_RNAGenScape/plot_manifold.py23 # Define a multi-well "energy" function (inverted to form valleys)COMMENT
Redundant / Tautological Comments1 hit · 2 pts
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LOWskills/nature-academic-search/install.sh76 # Check if academic-search already existsCOMMENT
Fake / Example Data1 hit · 2 pts
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LOW…/nature-academic-search/mcp-server/sources/crossref.py20 mailto = config.crossref_mailto or "user@example.com"CODE