EvoScientist/EvoScientist

50.6

Adjusted Score

50.6

Raw Score

100%

Time Factor

2026-08-27

Last Push

4.5K

Stars

Python

Language

158.1K

Lines of Code

458

Files

5.7K

Pattern Hits

2026-08-29

Scan Date

0.09

HC Hit Rate

What These Metrics Mean

Adjusted Score: Primary synthetic code indicator. Raw score normalised per 1,000 lines of code and multiplied by the temporal discount factor. This is the definitive comparative metric — use it to rank repositories by AI authorship density.
Raw Score: The unmodified sum of all severity-weighted, context-multiplied pattern match scores before temporal discounting. Reflects the absolute signal strength independent of when the repository was last active.
Time Factor: The temporal discount multiplier (0–100%) applied to the raw score. Repositories last updated before ChatGPT's launch (Nov 2022) receive a 5% factor. Full signal is only assigned to repositories active in the post-adoption era (Jan 2024+).
Pattern Hits: Total count of individual pattern matches across all files and categories. A high hit count with a low score may indicate a very large codebase with isolated AI snippets; a low count with a high score indicates dense, concentrated AI signatures.
HC Hit Rate: High+Critical pattern hits per file, averaged across the repository. This orthogonal signal catches repositories where a few files are densely packed with high-severity AI tells — a strong indicator even when the normalised score appears moderate due to codebase size.
Lines of Code / Files: Total lines and files analysed. The scanner examines 94 file extensions. These denominators are used to normalise the score, enabling fair comparison between repositories of vastly different sizes.

Score History

This chart maps the temporal evolution of the adjusted synthetic code score across successive scan runs. An upward trajectory indicates ongoing incorporation of AI-generated code or expanding LLM-assisted scaffolding; a stable or declining trajectory may reflect active human refactoring, code removal, or the adoption of stricter authorship policies. The dashed secondary line (right axis) independently tracks total raw pattern hit count, which can diverge from the normalised score when codebase size changes significantly between scans.

Severity Breakdown

Classifies detected patterns by their diagnostic confidence and structural impact. CRITICAL patterns (coefficient 10) represent definitive synthetic signatures — hallucinated imports, explicit LLM attribution metadata — virtually never produced by human authors. HIGH (5) indicates strong structural tells such as cross-file repetition or cross-linguistic idioms. MEDIUM (2) covers recognisable conversational padding and AI-specific vocabulary. LOW (1) captures subtle indicators like tautological comments and generic boilerplate that require density to carry independent signal.

CRITICAL 0HIGH 41MEDIUM 1046LOW 4593

Directory Score Breakdown

This horizontal bar chart decomposes the repository's raw synthetic code score by top-level directory, allowing you to pinpoint precisely which modules or components carry the highest AI authorship density. Directories with disproportionately high scores relative to their size warrant targeted manual review: concentrated AI signatures often trace back to mass-generated configuration layers, auto-ported test suites, LLM-scaffolded boilerplate classes, or entire subsystems authored under heavy copilot assistance. Use this view to prioritise your human code-review effort.

Pattern Findings

The scanner identified 5680 distinct pattern matches across 19 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a statistically significant AI authorship indicator. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.

Reading the findings table: The Severity column indicates the diagnostic confidence level (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — comment-context matches receive a ×1.5 weight because LLMs systematically over-annotate. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier as dense clusters constitute far stronger evidence of synthetic authorship than isolated hits.

Decorative Section Separators1001 hits · 3583 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/test_hitl.py	17	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	19	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	50	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	52	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	102	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	104	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	331	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	333	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	374	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	376	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	432	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	434	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	578	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	580	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	623	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	625	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	710	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	712	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	923	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	925	# =============================================================================	COMMENT
MEDIUM	tests/test_hitl.py	798	# =============================================================================	COMMENT
MEDIUM	tests/test_hitl.py	800	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	14	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	16	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	26	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	28	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	74	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	76	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	143	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	145	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	204	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	206	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_ccproxy_manager.py	87	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_ccproxy_manager.py	89	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_ccproxy_manager.py	204	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_ccproxy_manager.py	206	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	23	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	25	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	41	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	43	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	125	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	127	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	221	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	223	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	242	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	244	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	268	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	270	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	294	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	296	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	310	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	312	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	32	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	34	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	139	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	141	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	206	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	209	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_stream_state.py	10	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_stream_state.py	12	# =============================================================================	COMMENT
941 more matches not shown…

Hyper-Verbose Identifiers3162 hits · 2760 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/test_hitl.py	23	def test_interrupt_event_structure(self):	CODE
LOW⚡	tests/test_hitl.py	37	def test_interrupt_defaults_review_configs(self):	CODE
LOW⚡	tests/test_hitl.py	41	def test_interrupt_multiple_action_requests(self):	CODE
LOW⚡	tests/test_hitl.py	56	def test_handle_interrupt_sets_pending(self):	CODE
LOW⚡	tests/test_hitl.py	108	def test_empty_requests_auto_approves(self):	CODE
LOW⚡	tests/test_hitl.py	114	def test_session_auto_approve(self):	CODE
LOW⚡	tests/test_hitl.py	337	def test_auto_approve_default(self):	CODE
LOW⚡	tests/test_hitl.py	367	def test_shell_allow_list_set(self):	CODE
LOW⚡	tests/test_hitl.py	380	async def test_interrupt_from_updates_mode(self):	CODE
LOW⚡	tests/test_hitl.py	438	def test_parse_approval_approve(self):	CODE
LOW⚡	tests/test_hitl.py	444	def test_parse_approval_reject(self):	CODE
LOW⚡	tests/test_hitl.py	489	def test_should_auto_approve_non_execute(self):	CODE
LOW⚡	tests/test_hitl.py	494	def test_should_auto_approve_empty(self):	CODE
LOW⚡	tests/test_hitl.py	499	def test_should_auto_approve_execute_no_allowlist(self):	CODE
LOW⚡	tests/test_hitl.py	588	async def test_register_and_resolve_reply(self):	CODE
LOW⚡	tests/test_hitl.py	629	def test_prompt_fn_called_for_execute(self):	CODE
LOW⚡	tests/test_hitl.py	718	def test_hitl_interrupt_on_helper_gates_on_auto_approve(self):	CODE
LOW⚡	tests/test_hitl.py	723	def test_hitl_interrupt_on_helper_returns_shell_tools(self):	CODE
LOW⚡	tests/test_hitl.py	934	def test_dangerous_is_approved_under_session_grant(self):	CODE
LOW⚡	tests/test_hitl.py	1022	def test_async_factory_guards_research_agents(self):	CODE
LOW⚡	tests/test_hitl.py	1030	def test_async_factory_does_not_guard_internal_agents(self):	CODE
LOW⚡	tests/test_hitl.py	1040	def test_delegation_prompt_explains_blocked_command_relay(self):	CODE
LOW	tests/test_hitl.py	69	def test_pending_interrupt_starts_none(self):	CODE
LOW	tests/test_hitl.py	73	def test_interrupt_does_not_affect_other_state(self):	CODE
LOW	tests/test_hitl.py	87	def test_done_after_interrupt_preserves_pending(self):	CODE
LOW	tests/test_hitl.py	156	def test_non_execute_tool_auto_approves(self):	CODE
LOW	tests/test_hitl.py	181	def test_execute_with_matching_allow_list(self):	CODE
LOW	tests/test_hitl.py	206	def test_execute_not_in_allow_list_prompts(self):	CODE
LOW	tests/test_hitl.py	236	def test_run_in_background_not_in_allow_list_prompts(self):	CODE
LOW	tests/test_hitl.py	270	def test_run_in_background_in_allow_list_auto_approves(self):	CODE
LOW	tests/test_hitl.py	299	def test_delete_only_request_prompts_not_auto_approved(self):	CODE
LOW	tests/test_hitl.py	349	def test_shell_allow_list_default(self):	CODE
LOW	tests/test_hitl.py	417	async def test_updates_without_interrupt_skipped(self):	CODE
LOW	tests/test_hitl.py	456	def test_parse_approval_unrecognized(self):	CODE
LOW	tests/test_hitl.py	463	def test_format_approval_prompt(self):	CODE
LOW	tests/test_hitl.py	477	def test_format_approval_prompt_multiple(self):	CODE
LOW	tests/test_hitl.py	516	def test_should_auto_approve_run_in_background_no_allowlist(self):	CODE
LOW	tests/test_hitl.py	532	def test_should_auto_approve_config_true(self):	CODE
LOW	tests/test_hitl.py	546	def test_should_auto_approve_allowlist_match(self):	CODE
LOW	tests/test_hitl.py	561	def test_should_auto_approve_delete_not_cleared(self):	CODE
LOW	tests/test_hitl.py	604	def test_try_resolve_no_pending(self):	CODE
LOW	tests/test_hitl.py	612	async def test_reply_timeout_returns_none(self):	CODE
LOW	tests/test_hitl.py	658	def test_prompt_fn_not_called_for_auto_approve(self):	CODE
LOW	tests/test_hitl.py	685	def test_prompt_fn_not_called_for_non_execute(self):	CODE
LOW	tests/test_hitl.py	734	def test_auto_mode_implies_auto_approve_so_nothing_is_armed(self):	CODE
LOW	tests/test_hitl.py	745	def test_hitl_interrupt_on_reaches_create_deep_agent(self):	CODE
LOW	tests/test_hitl.py	816	def test_dangerous_command_rejected_under_auto_approve(self, monkeypatch):	CODE
LOW	tests/test_hitl.py	836	def test_everyday_command_approved_under_auto_approve(self, monkeypatch):	CODE
LOW	tests/test_hitl.py	848	def test_session_grant_blanket_approves_dangerous(self, monkeypatch):	CODE
LOW	tests/test_hitl.py	862	def test_interactive_dangerous_calls_prompt(self, monkeypatch):	CODE
LOW	tests/test_hitl.py	882	def test_schedule_task_always_prompts_not_auto_cleared(self, monkeypatch):	CODE
LOW	tests/test_hitl.py	905	def test_malformed_request_is_not_auto_approved(self, monkeypatch):	CODE
LOW	tests/test_hitl.py	950	def test_length_matches_all_approved(self):	CODE
LOW	tests/test_hitl.py	961	def test_empty_batch_returns_empty(self):	CODE
LOW	tests/test_hitl.py	972	def test_get_default_backend_applies_forced_guard(self):	CODE
LOW	tests/test_hitl.py	983	def test_get_default_backend_defaults_to_config_auto_approve(self):	CODE
LOW	tests/test_hitl.py	1052	def test_build_hitl_resume_is_id_keyed(self):	CODE
LOW	tests/test_hitl.py	1058	def test_two_parallel_subagent_interrupts_drain_without_crash(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	32	def test_returns_tool_message(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	64	def test_content_includes_retry_guidance(self):	CODE
3102 more matches not shown…

Excessive Try-Catch Wrapping517 hits · 472 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/test_tool_error_handler.py	68	except Exception:	CODE
LOW	tests/test_async_watcher_middleware.py	25	except Exception:	CODE
LOW	tests/test_async_watcher_middleware.py	33	except Exception:	CODE
LOW	tests/conftest.py	117	except Exception:	CODE
LOW	tests/test_background_middleware.py	60	except Exception:	CODE
LOW	tests/test_observation_memory.py	479	except Exception as exc:	CODE
MEDIUM	tests/test_stream_utils.py	41	content = '#!/usr/bin/env python3\n"""\nSkill Packager\n"""\n\nprint(f"Error: not found")'	CODE
LOW	tests/test_bus_integration.py	23	except Exception:	CODE
LOW⚡	tests/test_background.py	44	except Exception:	CODE
LOW	tests/test_stream_recovery.py	65	except Exception:	CODE
LOW⚡	EvoScientist/sessions.py	460	except Exception: # pragma: no cover - defensive (config import errors)	CODE
LOW⚡	EvoScientist/sessions.py	531	except Exception as exc:	CODE
LOW	EvoScientist/sessions.py	238	except Exception as exc: # pragma: no cover - defensive	CODE
LOW	EvoScientist/sessions.py	343	except Exception as exc:	CODE
LOW	EvoScientist/sessions.py	758	except Exception as exc:	CODE
LOW	EvoScientist/sessions.py	1814	except Exception:	CODE
LOW	EvoScientist/sessions.py	1876	except Exception:	CODE
LOW⚡	EvoScientist/sessions.py	1380	except Exception:	STRING
LOW	EvoScientist/sessions.py	1320	except Exception: # pragma: no cover - never let UI break sweep	STRING
LOW	EvoScientist/sessions.py	1565	except Exception:	STRING
LOW	EvoScientist/sessions.py	1704	except Exception:	STRING
LOW	EvoScientist/paths.py	140	except Exception:	CODE
LOW	EvoScientist/update_check.py	44	except Exception:	CODE
LOW	EvoScientist/update_check.py	57	except Exception:	CODE
LOW	EvoScientist/update_check.py	68	except Exception:	CODE
LOW	EvoScientist/background.py	133	except Exception:	CODE
LOW	EvoScientist/background.py	140	except Exception:	CODE
LOW	EvoScientist/backends.py	1336	except Exception:	CODE
LOW	EvoScientist/backends.py	1349	except Exception:	CODE
LOW	EvoScientist/backends.py	1766	except Exception as exc:	CODE
LOW	EvoScientist/ccproxy_manager.py	74	except Exception:	CODE
LOW⚡	EvoScientist/ccproxy_manager.py	166	except Exception as exc:	CODE
LOW	EvoScientist/ccproxy_manager.py	283	except Exception:	CODE
LOW	EvoScientist/stt.py	133	except Exception as e:	CODE
LOW	EvoScientist/middleware/expert_async_subagent.py	160	except Exception as e:	CODE
LOW	EvoScientist/middleware/expert_async_subagent.py	187	except Exception as e:	CODE
LOW	EvoScientist/middleware/context_overflow.py	36	except Exception as exc:	CODE
LOW	EvoScientist/middleware/context_overflow.py	54	except Exception as exc:	CODE
LOW	EvoScientist/middleware/async_watcher.py	98	except Exception:	CODE
LOW	EvoScientist/middleware/memory.py	467	except Exception as e:	CODE
LOW	EvoScientist/middleware/memory.py	484	except Exception as e:	CODE
LOW	EvoScientist/middleware/model_fallback.py	261	except Exception as fb_exc:	CODE
LOW	EvoScientist/middleware/model_fallback.py	331	except Exception as fb_exc:	CODE
LOW	EvoScientist/middleware/model_fallback.py	458	except Exception as exc:	CODE
LOW	EvoScientist/middleware/model_fallback.py	476	except Exception as exc:	CODE
LOW	EvoScientist/middleware/tool_selector.py	92	except Exception:	CODE
LOW	EvoScientist/middleware/tool_selector.py	213	except Exception as exc:	CODE
LOW	EvoScientist/middleware/tool_selector.py	262	except Exception as exc:	CODE
LOW	EvoScientist/middleware/configurable_model.py	60	except Exception:	CODE
LOW	EvoScientist/middleware/configurable_model.py	158	except Exception:	CODE
LOW	EvoScientist/middleware/configurable_model.py	186	except Exception:	CODE
LOW	EvoScientist/middleware/error_normalization.py	318	except Exception as exc:	CODE
LOW	EvoScientist/middleware/error_normalization.py	331	except Exception as exc:	CODE
LOW	EvoScientist/middleware/background.py	31	except Exception:	CODE
LOW	EvoScientist/middleware/active_team.py	76	except Exception:	CODE
LOW	EvoScientist/middleware/active_team.py	108	except Exception:	CODE
LOW	EvoScientist/middleware/active_team.py	112	except Exception:	CODE
LOW	EvoScientist/middleware/utils.py	61	except Exception:	CODE
LOW	EvoScientist/middleware/scheduler.py	72	except Exception as e:	CODE
LOW	EvoScientist/middleware/scheduler.py	89	except Exception as e:	CODE
457 more matches not shown…

Unused Imports473 hits · 434 pts

Severity	File	Line	Context
LOW	tests/test_serde_default_rich_exception.py	17	CODE
LOW	tests/test_serve_agent_holder.py	9	CODE
LOW	tests/test_middleware_utils.py	8	CODE
LOW	tests/test_async_watcher_middleware.py	8	CODE
LOW	tests/test_channel_notification_origin.py	4	CODE
LOW	tests/stream_v3_fakes.py	3	CODE
LOW	tests/test_thread_selector.py	3	CODE
LOW	tests/test_cli_resume_flag.py	3	CODE
LOW	tests/test_configurable_model_middleware.py	9	CODE
LOW	tests/test_wechat_channel.py	241	CODE
LOW	tests/test_wechat_channel.py	246	CODE
LOW	tests/test_async_subagent_swap.py	8	CODE
LOW	tests/test_autoskills.py	1	CODE
LOW	tests/test_async_subagent_factory.py	10	CODE
LOW	tests/test_route_async_specs.py	13	CODE
LOW	tests/test_observation_memory.py	1	CODE
LOW	tests/test_active_team_middleware.py	3	CODE
LOW	tests/test_cli_async_runtime.py	9	CODE
LOW	tests/test_llm.py	10	CODE
LOW	tests/test_file_mentions.py	3	CODE
LOW	tests/test_langgraph_schema_generator_silenced.py	11	CODE
LOW	tests/test_picker_widgets.py	11	CODE
LOW	tests/test_error_normalization_middleware.py	10	CODE
LOW	tests/test_langgraph_dev_deploy_mode.py	9	CODE
LOW	tests/test_agent_loader.py	3	CODE
LOW	tests/test_command_goto_none_crash.py	35	CODE
LOW	tests/test_command_goto_none_crash.py	48	CODE
LOW	tests/test_expert_container.py	3	CODE
LOW	tests/test_tui_completion_window.py	11	CODE
LOW	tests/test_load_subagents.py	8	CODE
LOW	tests/test_langgraph_dev_http.py	6	CODE
LOW	tests/test_langgraph_dev_workspace_sidecar.py	17	CODE
LOW	tests/test_cli_serve.py	3	CODE
LOW	tests/test_runtime.py	3	CODE
LOW	tests/test_mcp_client.py	392	CODE
LOW	tests/test_mcp_client.py	615	CODE
LOW	tests/test_graph_gateway.py	3	CODE
LOW	tests/test_experts_command.py	3	CODE
LOW	tests/test_middleware_event_sink.py	11	CODE
LOW	tests/test_model_passthrough_patch.py	11	CODE
LOW	tests/test_subagent_summarize.py	10	CODE
LOW	tests/test_ollama_discovery.py	9	CODE
LOW	tests/test_langgraph_manager.py	8	CODE
LOW	tests/test_cli_channel_bus_mode.py	3	CODE
LOW	tests/test_stream_cancel.py	3	CODE
LOW	tests/test_panel_widget.py	10	CODE
LOW	tests/test_agent_mcp_cache.py	3	CODE
LOW	tests/test_profile_memory_middleware.py	1	CODE
LOW	tests/test_gateway_background_runs.py	1	CODE
LOW	tests/test_tui_widgets.py	7	CODE
LOW	tests/test_model_fallback.py	7	CODE
LOW	tests/test_diff_format.py	3	CODE
LOW	tests/test_resume_hint.py	3	CODE
LOW	tests/test_channel_sends.py	3	CODE
LOW	tests/fakes.py	3	CODE
LOW	tests/test_stt.py	7	CODE
LOW	tests/test_channel_command_ui.py	1	CODE
LOW	tests/test_webui_launcher.py	11	CODE
LOW	tests/test_status_bar.py	3	CODE
LOW	tests/test_expert_async_subagent.py	3	CODE
413 more matches not shown…

Cross-Language Confusion26 hits · 150 pts

Severity	File	Line	Snippet	Context
HIGH⚡	tests/test_background_middleware.py	131	out = _run_bg(dangerous=True).invoke({"command": "cat /etc/hosts && cat ../x"})	CODE
HIGH⚡	tests/test_background_middleware.py	133	assert captured["command"] == "cat /etc/hosts && cat ../x" # no ./ rewrite	CODE
HIGH	tests/test_langgraph_dev_workspace_sidecar.py	83	'{"workspace": null}', # workspace present but null → Path(None) TypeError	CODE
HIGH⚡	tests/test_backends.py	113	result = validate_command("cd /etc && cat passwd")	CODE
HIGH⚡	tests/test_backends.py	141	assert validate_command("cd /etc && ls", dangerous=True) is None	CODE
HIGH⚡	tests/test_backends.py	1356	"cat /data/file.txt && ssh host 'ls /home/username/project'",	CODE
HIGH⚡	tests/test_backends.py	1363	== "cat ./data/file.txt && ssh host 'ls /home/username/project'"	CODE
HIGH⚡	tests/test_backends.py	1497	command = "cat /data/file.txt && ssh host 'ls /home/username/project'"	CODE
HIGH⚡	tests/test_backends.py	1504	== "cat ./data/file.txt && ssh host 'ls /home/username/project'"	CODE
HIGH⚡	tests/test_backends.py	1710	result = validate_command("echo ok && chmod 777 file")	CODE
HIGH⚡	tests/test_backends.py	1726	assert validate_command("mkdir build && cd build") is None	CODE
HIGH⚡	tests/test_backends.py	2063	assert check_dangerous_command("a \|\| bash") is None	CODE
HIGH⚡	tests/test_backends.py	2064	assert check_dangerous_command("a && bash") is None	CODE
HIGH⚡	tests/test_backends.py	2152	"ls -la && curl http://x -o y",	CODE
HIGH⚡	tests/test_backends.py	2153	"ls -la \|\| rm x",	CODE
HIGH	tests/test_backends.py	1210	command = f"mkdir -p {tmp_workspace}/test-sanitized && echo ok"	CODE
HIGH	tests/test_backends.py	1398	command = "echo __EVOSCI_SSH_REMOTE_0__ && ssh host 'ls /home'"	CODE
HIGH⚡	tests/test_backends.py	1709	"""chmod after && should be caught."""	STRING
HIGH⚡	tests/test_backends.py	1725	"""Normal && chains should be fine."""	STRING
HIGH⚡	EvoScientist/backends.py	632	"for example: ssh host 'cd /home/user/project && python train.py'."	CODE
HIGH	EvoScientist/backends.py	379	a chain (``a; b``, ``a && b``, ``a \| b``) must match, so an allow-listed	STRING
HIGH	EvoScientist/backends.py	513	>>> [(i, h, r, e) for _, i, h, r, e in _ssh_invocations("cat x && ssh -p 22 host 'pwd'")]	STRING
HIGH	EvoScientist/backends.py	560	>>> _ssh_remote_command_spans("cat /tmp/x && ssh host 'pwd'")	STRING
HIGH	EvoScientist/middleware/error_normalization.py	10	``{"message": …, "status_code": …, "body": …, "headers": null,	STRING
HIGH	EvoScientist/middleware/error_normalization.py	11	"raw_response": null, "data": {…}}`` with no ``error`` / ``class`` /	STRING
HIGH	EvoScientist/langgraph_dev/manager.py	269	``{"workspace": null}`` or ``{"workspace": []}`` would parse fine, pass	STRING

Modern Structural Boilerplate135 hits · 141 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/fakes.py	116	def update_status_after_compact(self, tokens_after: int) -> None:	CODE
LOW	EvoScientist/sessions.py	1165	async def _set_user_version(conn: aiosqlite.Connection, version: int) -> None:	STRING
LOW⚡	EvoScientist/EvoScientist.py	103	def set_active_config(cfg) -> None:	CODE
LOW	EvoScientist/EvoScientist.py	231	def set_chat_model_instance(instance, key: tuple[str \| None, str \| None]) -> None:	CODE
LOW	EvoScientist/paths.py	11	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/paths.py	145	def set_workspace_root(path: str \| Path) -> None:	CODE
LOW	EvoScientist/paths.py	208	def set_active_workspace(path: str \| Path) -> None:	CODE
LOW	EvoScientist/update_check.py	16	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/background.py	33	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/runtime.py	28	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/runtime.py	217	def _settle_abandoned_tasks(self) -> None:	CODE
LOW	EvoScientist/runtime.py	314	def _set_handle_result(handle: RuntimeHandle[Any], result: Any) -> None:	CODE
LOW	EvoScientist/runtime.py	321	def _set_handle_exception(handle: RuntimeHandle[Any], exc: BaseException) -> None:	CODE
LOW	EvoScientist/runtime.py	559	__all__ = [	CODE
LOW	EvoScientist/utils.py	17	logger = logging.getLogger(__name__)	CODE
LOW⚡	EvoScientist/ccproxy_manager.py	21	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/stt.py	23	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/context_overflow.py	21	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/code_interpreter.py	47	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/async_watcher.py	35	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/memory.py	38	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/model_fallback.py	31	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/model_fallback.py	77	def set_fallback_chain(chain: list[tuple[str, str]]) -> None:	CODE
LOW	EvoScientist/middleware/tool_selector.py	39	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/configurable_model.py	44	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/__init__.py	43	__all__ = [	CODE
LOW⚡	EvoScientist/middleware/ask_user.py	37	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/tool_history_repair.py	45	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/memory_lifecycle.py	23	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/tool_error_handler.py	33	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/tools/__init__.py	11	__all__ = [	CODE
LOW⚡	EvoScientist/llm/deepseek.py	15	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/memory/__init__.py	34	__all__ = [	CODE
LOW	EvoScientist/memory/scheduler.py	21	logger = logging.getLogger(__name__)	CODE
LOW⚡	EvoScientist/memory/agents/memory_worker.py	34	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/memory/agents/__init__.py	9	__all__ = [	CODE
LOW	EvoScientist/memory/agents/observation_linker.py	23	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/memory/observations/tools.py	31	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/memory/observations/__init__.py	40	__all__ = [	CODE
LOW	EvoScientist/config/__init__.py	30	__all__ = [	CODE
LOW	EvoScientist/config/onboard/prompter.py	115	__all__ = [	CODE
LOW	EvoScientist/config/onboard/constants.py	47	__all__ = [	CODE
LOW	EvoScientist/config/onboard/__init__.py	34	__all__ = ["run_onboard"]	CODE
LOW	EvoScientist/deploy/__init__.py	22	__all__ = ["server"]	CODE
LOW	EvoScientist/stream/sink.py	24	logger = logging.getLogger(__name__)	CODE
LOW⚡	EvoScientist/mcp/registry.py	27	logger = logging.getLogger(__name__)	CODE
LOW⚡	EvoScientist/mcp/client.py	26	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/mcp/__init__.py	29	__all__ = [	CODE
LOW⚡	EvoScientist/cli/rich_command_ui.py	226	def update_status_after_compact(self, input_tokens: int) -> None:	CODE
LOW	EvoScientist/cli/async_notifier.py	103	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/cli/tui_interactive.py	3373	def _set_status_usage_baseline(self, input_tokens: int) -> None:	CODE
LOW	EvoScientist/cli/tui_interactive.py	3384	def update_status_after_compact(self, tokens_after: int) -> None:	CODE
LOW	EvoScientist/cli/tui_interactive.py	3410	def _set_status_streaming_text(self, text: str \| None) -> None:	CODE
LOW	EvoScientist/cli/channel.py	107	def _set_channel_response(msg_id: str, response: str) -> None:	CODE
LOW	EvoScientist/cli/__init__.py	15	__all__ = [	CODE
LOW	EvoScientist/cli/interactive.py	592	def _set_status_streaming_text(text: str \| None) -> None:	CODE
LOW	EvoScientist/cli/clipboard.py	29	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/cli/widgets/ask_user_widget.py	26	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/cli/widgets/ask_user_widget.py	131	def set_future(self, future: asyncio.Future) -> None:	CODE
LOW⚡	EvoScientist/cli/widgets/ask_user_widget.py	340	def _update_choices(self) -> None:	CODE
75 more matches not shown…

Deep Nesting170 hits · 129 pts

Severity	File	Line	Context
LOW	tests/test_hitl.py	745	CODE
LOW	tests/test_async_watcher_middleware.py	18	CODE
LOW	EvoScientist/sessions.py	465	CODE
LOW	EvoScientist/sessions.py	591	CODE
LOW	EvoScientist/sessions.py	1580	CODE
LOW	EvoScientist/background.py	234	CODE
LOW	EvoScientist/runtime.py	456	CODE
LOW	EvoScientist/backends.py	164	CODE
LOW	EvoScientist/backends.py	304	CODE
LOW	EvoScientist/backends.py	715	CODE
LOW	EvoScientist/backends.py	987	CODE
LOW	EvoScientist/backends.py	1022	CODE
LOW	EvoScientist/backends.py	1053	CODE
LOW	EvoScientist/backends.py	1303	CODE
LOW	EvoScientist/backends.py	1534	CODE
LOW	EvoScientist/backends.py	1637	CODE
LOW	EvoScientist/utils.py	43	CODE
LOW	EvoScientist/utils.py	85	CODE
LOW	EvoScientist/ccproxy_manager.py	55	CODE
LOW	EvoScientist/middleware/tool_selector.py	71	CODE
LOW	EvoScientist/middleware/error_normalization.py	64	CODE
LOW	EvoScientist/middleware/ask_user.py	245	CODE
LOW	EvoScientist/middleware/tool_history_repair.py	60	CODE
LOW	EvoScientist/middleware/tool_history_repair.py	156	CODE
LOW	EvoScientist/tools/skills_manager.py	835	CODE
LOW	EvoScientist/tools/skills_manager.py	996	CODE
LOW	EvoScientist/tools/skills_manager.py	1167	CODE
LOW	EvoScientist/tools/skill_manager.py	10	CODE
LOW	EvoScientist/llm/models.py	327	CODE
LOW	EvoScientist/llm/patches.py	50	CODE
LOW	EvoScientist/llm/patches.py	94	CODE
LOW	EvoScientist/llm/patches.py	355	CODE
LOW	EvoScientist/llm/patches.py	392	CODE
LOW	EvoScientist/llm/patches.py	866	CODE
LOW	EvoScientist/llm/patches.py	1249	CODE
LOW	EvoScientist/memory/autoskills/candidates.py	124	CODE
LOW	EvoScientist/config/onboard/steps.py	1108	CODE
LOW	EvoScientist/config/onboard/wizard.py	67	CODE
LOW	EvoScientist/config/onboard/wizard.py	156	CODE
LOW	EvoScientist/config/onboard/wizard.py	479	CODE
LOW	EvoScientist/config/onboard/channels.py	25	CODE
LOW	EvoScientist/config/onboard/channels.py	828	CODE
LOW	EvoScientist/config/onboard/channels.py	848	CODE
LOW	EvoScientist/config/onboard/helpers.py	366	CODE
LOW	EvoScientist/config/onboard/helpers.py	661	CODE
LOW	EvoScientist/deploy/webui.py	48	CODE
LOW	EvoScientist/stream/events.py	804	CODE
LOW	EvoScientist/stream/events.py	858	CODE
LOW	EvoScientist/stream/events.py	569	CODE
LOW	EvoScientist/stream/display.py	277	CODE
LOW	EvoScientist/stream/display.py	651	CODE
LOW	EvoScientist/stream/display.py	1035	CODE
LOW	EvoScientist/stream/display.py	1313	CODE
LOW	EvoScientist/stream/display.py	1431	CODE
LOW	EvoScientist/stream/display.py	1524	CODE
LOW	EvoScientist/stream/utils.py	140	CODE
LOW	EvoScientist/stream/summarization.py	15	CODE
LOW	EvoScientist/stream/v3_payloads.py	56	CODE
LOW	EvoScientist/stream/tool_results.py	18	CODE
LOW	EvoScientist/stream/diff_format.py	66	CODE
110 more matches not shown…

Structural Annotation Overuse49 hits · 91 pts

Severity	File	Line	Snippet	Context
LOW⚡	EvoScientist/prompts.py	183	## Step 5: Write Report	COMMENT
LOW⚡	EvoScientist/prompts.py	189	## Step 6: Verify	COMMENT
LOW	EvoScientist/prompts.py	105	## Step 3: Execute & Debug	COMMENT
LOW	EvoScientist/prompts.py	130	## Step 4: Evaluate & Iterate	COMMENT
LOW⚡	EvoScientist/prompts.py	88	return "\n".join(["## Step 1: Intake & Scope", *bullets])	STRING
LOW⚡	EvoScientist/prompts.py	91	_EXPERIMENT_WORKFLOW_EXECUTION = """## Step 2: Plan (Recommended Structure)	STRING
LOW	EvoScientist/config/onboard/helpers.py	667	# Step 1: Validate	COMMENT
LOW	EvoScientist/config/onboard/helpers.py	683	# Step 2: Offer to install	COMMENT
LOW	EvoScientist/skills/find-skills/SKILL.md	20	## Step 1: Search for Skills	COMMENT
LOW	EvoScientist/skills/find-skills/SKILL.md	42	## Step 2: Present Options	COMMENT
LOW	EvoScientist/skills/find-skills/SKILL.md	50	## Step 3: Install	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	206	### Step 1: Spawn all runs (with-skill AND baseline) using `task` tool	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	236	### Step 2: While runs are in progress, draft assertions	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	242	### Step 3: As runs complete, capture timing data	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	254	### Step 4: Grade, aggregate, and launch the viewer	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	287	### Step 5: Read the feedback	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	330	### Step 1: Generate trigger eval queries	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	347	### Step 2: Review with user	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	356	### Step 3: Run the optimization loop	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	377	### Step 4: Apply the result	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/grader.md	21	### Step 1: Read the Transcript	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/grader.md	27	### Step 2: Examine Output Files	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/grader.md	33	### Step 3: Evaluate Each Assertion	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/grader.md	43	### Step 4: Extract and Verify Claims	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/grader.md	61	### Step 5: Read User Notes	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/grader.md	68	### Step 6: Critique the Evals	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/grader.md	81	### Step 7: Write Grading Results	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/grader.md	101	### Step 8: Read Executor Metrics and Timing	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	22	### Step 1: Read Both Outputs	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	29	### Step 2: Understand the Task	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	37	### Step 3: Generate Evaluation Rubric	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	60	### Step 4: Evaluate Each Output Against the Rubric	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	68	### Step 5: Check Assertions (if provided)	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	77	### Step 6: Determine the Winner	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	87	### Step 7: Write Comparison Results	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	23	### Step 1: Read Comparison Result	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	29	### Step 2: Read Both Skills	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	39	### Step 3: Read Both Transcripts	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	49	### Step 4: Analyze Instruction Following	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	59	### Step 5: Identify Winner Strengths	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	69	### Step 6: Identify Loser Weaknesses	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	77	### Step 7: Generate Improvement Suggestions	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	87	### Step 8: Write Analysis Results	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	205	### Step 1: Read Benchmark Data	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	211	### Step 2: Analyze Per-Assertion Patterns	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	220	### Step 3: Analyze Cross-Eval Patterns	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	227	### Step 4: Analyze Metrics Patterns	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	234	### Step 5: Generate Notes	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/analyzer.md	249	### Step 6: Write Notes	COMMENT

Docstring Block Structure12 hits · 60 pts

Severity	File	Line	Snippet	Context
HIGH	EvoScientist/__init__.py	45	Lazily import and cache package-level attributes. Args: name: The attribute name to look up. Returns:	STRING
HIGH	EvoScientist/ccproxy_manager.py	214	Start ccproxy serve as a background process. Args: port: Port number for the proxy server. Returns:	STRING
HIGH	EvoScientist/middleware/model_fallback.py	207	Walk the fallback chain, trying each model until one succeeds. Shared implementation for both sync and async middle	STRING
HIGH	EvoScientist/middleware/model_fallback.py	383	Check non-fallbackable conditions, then delegate to ``_try_fallbacks``. Args: primary_exc: The exception ra	STRING
HIGH	EvoScientist/tools/skill_manager.py	18	Manage user-installable skills: install from GitHub or local path, list available skills, browse remote skills, get deta	STRING
HIGH	EvoScientist/llm/models.py	332	Get a chat model instance. Args: model: Model name (short name like 'claude-sonnet-4-6' or full ID	STRING
HIGH	EvoScientist/subagents/_factory.py	27	Build a deployable graph for the ``name`` sub-agent defined in yaml. Args: name: The sub-agent's key in one	STRING
HIGH	EvoScientist/config/settings.py	672	Coerce a value to the expected field type. Args: value: The value to coerce. field_type: The target	STRING
HIGH	EvoScientist/langgraph_dev/manager.py	800	Start langgraph dev as a background subprocess. Args: workspace_dir: Working directory for the subprocess (	STRING
HIGH	EvoScientist/commands/implementation/model.py	10	Parse model name and provider from argument list. Args: args: Non-empty argument list (model_name [provider	STRING
HIGH	EvoScientist/channels/imessage/targets.py	150	Parse an iMessage target string. Supports formats: - chat_id:123 - chat_guid:abc-def - chat_identifier:	STRING
HIGH	EvoScientist/channels/imessage/rpc_client.py	127	Send a JSON-RPC request and wait for response. Args: method: RPC method name params: Me	STRING

Over-Commented Block51 hits · 38 pts

Severity	File	Line	Snippet	Context
LOW	tests/test_stt.py	261	# EvoSci config set stt_enabled true	COMMENT
LOW	EvoScientist/sessions.py	1301	# have threads where the latest N checkpoints sit ABOVE a	COMMENT
LOW	EvoScientist/sessions.py	1621	try:	COMMENT
LOW	EvoScientist/EvoScientist.py	81	# tool selector). Cached separately from the main model; falls back to the main	COMMENT
LOW	EvoScientist/EvoScientist.py	601	# only when the yaml-async spec list is non-empty. An expert-only setup	COMMENT
LOW	EvoScientist/EvoScientist.py	621	# expert name, no notification is enqueued, and the main agent never	COMMENT
LOW	EvoScientist/middleware/expert_async_subagent.py	241		COMMENT
LOW	EvoScientist/middleware/tool_selector.py	301	from langchain.agents.middleware import LLMToolSelectorMiddleware	COMMENT
LOW	EvoScientist/tools/skills_manager.py	121	# SKILL.md body (post-frontmatter). Populated by ``_parse_skill_md`` so	COMMENT
LOW	EvoScientist/tools/skills_manager.py	161	body = content[match.end() :].lstrip()	COMMENT
LOW	EvoScientist/llm/context_window.py	41	# Tencent Hunyuan HY3 — 262K context (OpenRouter ``tencent/hy3``).	COMMENT
LOW	EvoScientist/llm/models.py	401	if _is_openai_proxy:	COMMENT
LOW	EvoScientist/llm/models.py	461	# Moonshot: disable thinking for pre-K3 models to prevent LangChain from	COMMENT
LOW	EvoScientist/llm/models.py	481	# so enabling `summary` is safe. See langchain-ai/langchain#37777.	COMMENT
LOW	EvoScientist/llm/patches.py	81	_patch_anthropic_proxy_compat()	COMMENT
LOW	EvoScientist/llm/patches.py	781	# Patch (module-level): silence langgraph_api's OpenAPI schema-generation	COMMENT
LOW	EvoScientist/llm/patches.py	841	# Patch (lazy, Anthropic protocol): strip foreign reasoning blocks from	COMMENT
LOW	EvoScientist/llm/patches.py	961		COMMENT
LOW	EvoScientist/llm/patches.py	1061	# ---------------------------------------------------------------------------	COMMENT
LOW	EvoScientist/llm/errors.py	101	for.	COMMENT
LOW	EvoScientist/llm/errors.py	161	# Kept here rather than imported from ``models.py`` to keep the	COMMENT
LOW	EvoScientist/subagents/_factory.py	81	# ``mcp.yaml``. Use the cached helper so multiple ``build_async_subagent_graph``	COMMENT
LOW	EvoScientist/subagents/expert_container_async.py	321	_get_default_middleware,	COMMENT
LOW	EvoScientist/memory/observations/store.py	361	for document, entries in parsed	COMMENT
LOW	EvoScientist/config/settings.py	201	# non-blocking via AsyncSubAgent. Currently affects writing-agent and	COMMENT
LOW	EvoScientist/config/settings.py	221	# so widening never redirects their traffic off-box.	COMMENT
LOW	EvoScientist/config/settings.py	241	# Empty string => the host's local IANA zone (resolved via tzlocal), falling	COMMENT
LOW	EvoScientist/config/settings.py	261	# Keep the auto-started langgraph dev subprocess running after the CLI	COMMENT
LOW	EvoScientist/config/settings.py	281	recursion_limit: int = 1_000_000	COMMENT
LOW	EvoScientist/config/settings.py	321	default_workdir: str = ""	COMMENT
LOW	EvoScientist/config/settings.py	461	enable_ask_user: bool = True # Enable ask_user tool for agent-initiated questions	COMMENT
LOW	EvoScientist/config/settings.py	921	"""	COMMENT
LOW	EvoScientist/config/onboard/wizard.py	561	f"bytes ({exc}); revert will fall back to a re-serialized "	COMMENT
LOW	EvoScientist/config/onboard/wizard.py	601	# we re-snapped here, declining the save after Reset would	COMMENT
LOW	EvoScientist/mcp/client.py	21		COMMENT
LOW	EvoScientist/mcp/client.py	101		COMMENT
LOW	EvoScientist/cli/async_notifier.py	61	# drains for any current_thread_id (back-compat for direct callers).	COMMENT
LOW	EvoScientist/cli/channel.py	481		COMMENT
LOW	EvoScientist/cli/interactive.py	821	async def _on_handle_session_resume(	COMMENT
LOW	EvoScientist/langgraph_dev/__init__.py	21	# loop that serves runs. Forcing the Proactor loop policy here — at import,	COMMENT
LOW	EvoScientist/langgraph_dev/main_graph.py	21	from langgraph.graph.state import CompiledStateGraph	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	301	# Shell B blocks until Shell A's health-check finishes, then sees the	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	321	_LOG_OFFSET_AT_START: int = 0	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	841	config_file = _packaged_langgraph_config()	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	901	RUNTIME.pid_dir.mkdir(parents=True, exist_ok=True)	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	921		COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	941	# who want a clean workspace can opt out via:	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	961	# MCP normally; async sub-agents stay disabled (no langgraph dev	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	1201	"""	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	1281	if is_langgraph_dev_running(port=port, host=host):	COMMENT
LOW	.github/workflows/publish.yml	1	name: Publish to PyPI	COMMENT

Modern AI Meta-Vocabulary9 hits · 32 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/test_langgraph_manager.py	404	# ensure_langgraph_dev — high-level orchestration	COMMENT
MEDIUM	…erature/SIGIR2026_public_arxiv_systematic_survey_zh.md	126	## 5. Search Agents、RAG 与推理：从单轮检索到轨迹级策略学习	COMMENT
MEDIUM	…erature/SIGIR2026_public_arxiv_systematic_survey_zh.md	148	### 5.4 长视频与时空 grounding 说明 agentic reasoning 已跨出文本	COMMENT
MEDIUM	…erature/SIGIR2026_public_arxiv_systematic_survey_en.md	128	## 5. Search Agents, RAG, and Reasoning: From Single-Turn Retrieval to Trajectory-Level Policy Learning	COMMENT
MEDIUM	EvoScientist/sessions.py	696	# a multi-agent DB where a third-party tool shares the same	COMMENT
MEDIUM	EvoScientist/backends.py	43	# If the agent hallucinates an absolute system path, we block it.	COMMENT
MEDIUM⚡	EvoScientist/ccproxy_manager.py	332	# High-level orchestration	COMMENT
MEDIUM	EvoScientist/middleware/code_interpreter.py	122	# Multi-agent orchestration is the killer use case: ``Promise.all`` over	COMMENT
MEDIUM⚡	EvoScientist/langgraph_dev/manager.py	1176	# High-level orchestration	COMMENT

Self-Referential Comments7 hits · 24 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/test_skills_manager.py	768	# Create a fake repo structure	COMMENT
MEDIUM	tests/test_sessions.py	2831	# Create a valid but empty SQLite DB (no checkpoints table).	COMMENT
MEDIUM⚡	tests/test_mcp_client.py	1693	# Create a fake executable in a temp bin dir	COMMENT
MEDIUM	tests/test_mcp_client.py	131	# Create a fake executable next to sys.executable	COMMENT
MEDIUM	tests/test_channel_debug.py	178	# Create a minimal concrete channel	COMMENT
MEDIUM	EvoScientist/utils.py	113	# Create a formatted display of the prompt	COMMENT
MEDIUM	EvoScientist/channels/standalone.py	103	# Create a lightweight manager for the consumer to use	COMMENT

AI Structural Patterns25 hits · 18 pts

Severity	File	Line	Context
LOW	tests/test_cli_serve.py	14	CODE
LOW	tests/test_cli_serve.py	49	CODE
LOW	tests/fakes.py	207	CODE
LOW	tests/test_cli_deploy.py	24	CODE
LOW	tests/test_cli_deploy.py	70	CODE
LOW	tests/test_cli_deploy.py	128	CODE
LOW	EvoScientist/backends.py	1476	CODE
LOW	EvoScientist/middleware/memory.py	620	CODE
LOW	EvoScientist/middleware/memory.py	231	CODE
LOW	EvoScientist/tools/skills_manager.py	467	CODE
LOW	EvoScientist/stream/display.py	651	CODE
LOW	EvoScientist/stream/display.py	1431	CODE
LOW	EvoScientist/cli/tui_runtime.py	107	CODE
LOW	EvoScientist/cli/tui_interactive.py	1531	CODE
LOW	EvoScientist/cli/tui_backends.py	21	CODE
LOW	EvoScientist/cli/tui_backends.py	51	CODE
LOW	EvoScientist/cli/interactive.py	391	CODE
LOW	EvoScientist/cli/commands.py	113	CODE
LOW	EvoScientist/cli/commands.py	1442	CODE
LOW	EvoScientist/cli/commands.py	2110	CODE
LOW	EvoScientist/cli/commands.py	454	CODE
LOW	EvoScientist/langgraph_dev/manager.py	789	CODE
LOW	EvoScientist/channels/mixins.py	141	CODE
LOW	EvoScientist/channels/consumer.py	208	CODE
LOW	EvoScientist/channels/dingtalk/channel.py	319	CODE

Redundant / Tautological Comments12 hits · 16 pts

Severity	File	Line	Snippet	Context
LOW	EvoScientist/tools/skills_manager.py	854	# Check if local path exists	COMMENT
LOW	EvoScientist/tools/skills_manager.py	1204	# Check if it's a built-in skill (read-only, cannot be uninstalled)	COMMENT
LOW	EvoScientist/config/settings.py	205	# Set False to run fully in-process — saves the startup cost in scenarios	COMMENT
LOW	EvoScientist/config/onboard/steps.py	1323	# Check if any selected servers require npx	COMMENT
LOW	EvoScientist/stream/display.py	989	# Check if any sub-agent is active	COMMENT
LOW	EvoScientist/mcp/client.py	858	# Check if any pattern contains wildcard characters	COMMENT
LOW	EvoScientist/commands/implementation/mcp_install.py	70	# Check if it's a tag — fall through to browser	COMMENT
LOW	EvoScientist/skills/skill-creator/scripts/run_eval.py	88	# Check if the model called load_skill with the right skill name	COMMENT
LOW	EvoScientist/skills/skill-creator/scripts/init_skill.py	207	# Check if directory already exists	COMMENT
LOW	EvoScientist/channels/middleware.py	276	# Check if already has pending request	COMMENT
LOW	EvoScientist/channels/imessage/targets.py	185	# Check if remainder is a chat target	COMMENT
LOW	EvoScientist/channels/imessage/rpc_client.py	214	# Check if it's a response (has id)	COMMENT

Cross-File Repetition3 hits · 15 pts

Severity	File	Snippet	Context
HIGH	tests/test_background_middleware.py	cross-platform command that sleeps for seconds and exits 0.	STRING
HIGH	tests/test_background.py	cross-platform command that sleeps for seconds and exits 0.	STRING
HIGH	tests/test_backends.py	cross-platform command that sleeps for seconds and exits 0.	STRING

Fake / Example Data12 hits · 13 pts

Severity	File	Line	Snippet	Context
LOW	tests/test_dingtalk_channel.py	128	channel._access_token = "fake-token"	CODE
LOW⚡	tests/test_dingtalk_channel.py	250	channel._access_token = "fake-token"	CODE
LOW⚡	tests/test_feishu_channel.py	554	channel._access_token = "fake-token"	CODE
LOW⚡	tests/test_feishu_channel.py	670	channel._access_token = "fake-token"	CODE
LOW⚡	tests/test_feishu_channel.py	680	channel._access_token = "fake-token"	CODE
LOW	tests/test_feishu_channel.py	199	channel._access_token = "fake-token"	CODE
LOW	tests/test_feishu_channel.py	343	channel._access_token = "fake-token"	CODE
LOW	tests/test_feishu_channel.py	361	channel._access_token = "fake-token"	CODE
LOW	tests/test_feishu_channel.py	618	channel._access_token = "fake-token"	CODE
LOW⚡	tests/test_additional_channel_smoke.py	27	chat_id="user@example.com",	CODE
LOW⚡	tests/test_additional_channel_smoke.py	29	metadata={"chat_id": "user@example.com"},	CODE
LOW	EvoScientist/config/onboard/helpers.py	180	kwargs["placeholder"] = placeholder	CODE

Verbosity Indicators8 hits · 11 pts

Severity	File	Line	Snippet	Context
LOW⚡	EvoScientist/prompts.py	183	## Step 5: Write Report	COMMENT
LOW⚡	EvoScientist/prompts.py	189	## Step 6: Verify	COMMENT
LOW	EvoScientist/prompts.py	105	## Step 3: Execute & Debug	COMMENT
LOW	EvoScientist/prompts.py	130	## Step 4: Evaluate & Iterate	COMMENT
LOW⚡	EvoScientist/prompts.py	88	return "\n".join(["## Step 1: Intake & Scope", *bullets])	STRING
LOW⚡	EvoScientist/prompts.py	91	_EXPERIMENT_WORKFLOW_EXECUTION = """## Step 2: Plan (Recommended Structure)	STRING
LOW	EvoScientist/config/onboard/helpers.py	667	# Step 1: Validate	COMMENT
LOW	EvoScientist/config/onboard/helpers.py	683	# Step 2: Offer to install	COMMENT

AI Slop Vocabulary4 hits · 11 pts

Severity	File	Line	Snippet	Context
MEDIUM	tests/test_langgraph_dev_http.py	112	# Ollama suffix — robust to future static Ollama entries in the registry.	COMMENT
MEDIUM⚡	EvoScientist/llm/patches.py	925	# azure-ignore is not sufficient). The only robust fix is to drop these items	COMMENT
MEDIUM	EvoScientist/mcp/client.py	237	# Forward by keyword: robust against future SDK signature changes	COMMENT
LOW	EvoScientist/cli/tui_interactive.py	2462	# errors; callers just return so the send is dropped.	COMMENT

Dead Code4 hits · 7 pts

Severity	File	Line	Context
MEDIUM	tests/test_llm.py	2425	CODE
MEDIUM	tests/test_mcp_client.py	582	CODE
MEDIUM	tests/test_async_notifier.py	96	CODE
MEDIUM	tests/test_async_notifier.py	964	CODE

Analysis Overview

What These Metrics Mean

Score History

Severity Breakdown

Directory Score Breakdown

Pattern Findings