EvoScientist/EvoScientist

51.6

Adjusted Score

51.6

Raw Score

100%

Time Factor

2026-07-14

Last Push

4.2K

Stars

Python

Language

134.9K

Lines of Code

413

Files

4.7K

Pattern Hits

2026-07-14

Scan Date

0.09

HC Hit Rate

What These Metrics Mean

Adjusted Score: Primary synthetic code indicator. Raw score normalised per 1,000 lines of code and multiplied by the temporal discount factor. This is the definitive comparative metric — use it to rank repositories by AI authorship density.
Raw Score: The unmodified sum of all severity-weighted, context-multiplied pattern match scores before temporal discounting. Reflects the absolute signal strength independent of when the repository was last active.
Time Factor: The temporal discount multiplier (0–100%) applied to the raw score. Repositories last updated before ChatGPT's launch (Nov 2022) receive a 5% factor. Full signal is only assigned to repositories active in the post-adoption era (Jan 2024+).
Pattern Hits: Total count of individual pattern matches across all files and categories. A high hit count with a low score may indicate a very large codebase with isolated AI snippets; a low count with a high score indicates dense, concentrated AI signatures.
HC Hit Rate: High+Critical pattern hits per file, averaged across the repository. This orthogonal signal catches repositories where a few files are densely packed with high-severity AI tells — a strong indicator even when the normalised score appears moderate due to codebase size.
Lines of Code / Files: Total lines and files analysed. The scanner examines 94 file extensions. These denominators are used to normalise the score, enabling fair comparison between repositories of vastly different sizes.

Score History

This chart maps the temporal evolution of the adjusted synthetic code score across successive scan runs. An upward trajectory indicates ongoing incorporation of AI-generated code or expanding LLM-assisted scaffolding; a stable or declining trajectory may reflect active human refactoring, code removal, or the adoption of stricter authorship policies. The dashed secondary line (right axis) independently tracks total raw pattern hit count, which can diverge from the normalised score when codebase size changes significantly between scans.

Severity Breakdown

Classifies detected patterns by their diagnostic confidence and structural impact. CRITICAL patterns (coefficient 10) represent definitive synthetic signatures — hallucinated imports, explicit LLM attribution metadata — virtually never produced by human authors. HIGH (5) indicates strong structural tells such as cross-file repetition or cross-linguistic idioms. MEDIUM (2) covers recognisable conversational padding and AI-specific vocabulary. LOW (1) captures subtle indicators like tautological comments and generic boilerplate that require density to carry independent signal.

CRITICAL 0HIGH 36MEDIUM 947LOW 3750

Directory Score Breakdown

This horizontal bar chart decomposes the repository's raw synthetic code score by top-level directory, allowing you to pinpoint precisely which modules or components carry the highest AI authorship density. Directories with disproportionately high scores relative to their size warrant targeted manual review: concentrated AI signatures often trace back to mass-generated configuration layers, auto-ported test suites, LLM-scaffolded boilerplate classes, or entire subsystems authored under heavy copilot assistance. Use this view to prioritise your human code-review effort.

Pattern Findings

The scanner identified 4733 distinct pattern matches across 19 syntactic categories. Each entry below represents a discrete location in the source code where the engine recorded a statistically significant AI authorship indicator. Expand any category row to inspect the individual file paths, line numbers, code snippets, and the lexical context (CODE, COMMENT, or STRING) in which each match was detected.

Reading the findings table: The Severity column indicates the diagnostic confidence level (CRITICAL / HIGH / MEDIUM / LOW). The Context column identifies whether the match occurred inside executable code, an inline comment, or a string literal — comment-context matches receive a ×1.5 weight because LLMs systematically over-annotate. The ⚡ bolt icon marks clustered matches: three or more patterns within a 10-line window, each receiving an additional ×1.5 density multiplier as dense clusters constitute far stronger evidence of synthetic authorship than isolated hits.

Decorative Section Separators904 hits · 3263 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/test_hitl.py	17	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	19	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	50	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	52	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	141	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	143	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	333	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	335	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	376	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	378	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	434	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	436	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	560	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	562	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	605	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_hitl.py	607	# =============================================================================	COMMENT
MEDIUM	tests/test_hitl.py	102	# =============================================================================	COMMENT
MEDIUM	tests/test_hitl.py	104	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	14	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	16	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	26	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	28	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	74	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	76	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	143	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	145	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	204	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_tool_error_handler.py	206	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_ccproxy_manager.py	87	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_ccproxy_manager.py	89	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_ccproxy_manager.py	204	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_ccproxy_manager.py	206	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	23	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	25	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	41	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	43	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	125	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	127	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	221	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	223	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	242	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	244	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	268	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	270	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	294	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	296	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	310	# =============================================================================	COMMENT
MEDIUM	tests/test_ccproxy_manager.py	312	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	32	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	34	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	139	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	141	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	206	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_serde_default_rich_exception.py	209	# ---------------------------------------------------------------------------	COMMENT
MEDIUM⚡	tests/test_stream_state.py	10	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_stream_state.py	12	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_stream_state.py	63	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_stream_state.py	65	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_stream_state.py	362	# =============================================================================	COMMENT
MEDIUM⚡	tests/test_stream_state.py	364	# =============================================================================	COMMENT
844 more matches not shown…

Hyper-Verbose Identifiers2454 hits · 2171 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/test_hitl.py	23	def test_interrupt_event_structure(self):	CODE
LOW⚡	tests/test_hitl.py	37	def test_interrupt_defaults_review_configs(self):	CODE
LOW⚡	tests/test_hitl.py	41	def test_interrupt_multiple_action_requests(self):	CODE
LOW⚡	tests/test_hitl.py	56	def test_handle_interrupt_sets_pending(self):	CODE
LOW⚡	tests/test_hitl.py	147	def test_empty_requests_auto_approves(self):	CODE
LOW⚡	tests/test_hitl.py	153	def test_session_auto_approve(self):	CODE
LOW⚡	tests/test_hitl.py	339	def test_auto_approve_default(self):	CODE
LOW⚡	tests/test_hitl.py	369	def test_shell_allow_list_set(self):	CODE
LOW⚡	tests/test_hitl.py	382	async def test_interrupt_from_updates_mode(self):	CODE
LOW⚡	tests/test_hitl.py	440	def test_parse_approval_approve(self):	CODE
LOW⚡	tests/test_hitl.py	446	def test_parse_approval_reject(self):	CODE
LOW⚡	tests/test_hitl.py	491	def test_should_auto_approve_non_execute(self):	CODE
LOW⚡	tests/test_hitl.py	496	def test_should_auto_approve_empty(self):	CODE
LOW⚡	tests/test_hitl.py	501	def test_should_auto_approve_execute_no_allowlist(self):	CODE
LOW⚡	tests/test_hitl.py	570	async def test_register_and_resolve_reply(self):	CODE
LOW⚡	tests/test_hitl.py	611	def test_prompt_fn_called_for_execute(self):	CODE
LOW	tests/test_hitl.py	69	def test_pending_interrupt_starts_none(self):	CODE
LOW	tests/test_hitl.py	73	def test_interrupt_does_not_affect_other_state(self):	CODE
LOW	tests/test_hitl.py	87	def test_done_after_interrupt_preserves_pending(self):	CODE
LOW	tests/test_hitl.py	194	def test_non_execute_tool_auto_approves(self):	CODE
LOW	tests/test_hitl.py	218	def test_execute_with_matching_allow_list(self):	CODE
LOW	tests/test_hitl.py	242	def test_execute_not_in_allow_list_prompts(self):	CODE
LOW	tests/test_hitl.py	271	def test_run_in_background_not_in_allow_list_prompts(self):	CODE
LOW	tests/test_hitl.py	304	def test_run_in_background_in_allow_list_auto_approves(self):	CODE
LOW	tests/test_hitl.py	351	def test_shell_allow_list_default(self):	CODE
LOW	tests/test_hitl.py	419	async def test_updates_without_interrupt_skipped(self):	CODE
LOW	tests/test_hitl.py	458	def test_parse_approval_unrecognized(self):	CODE
LOW	tests/test_hitl.py	465	def test_format_approval_prompt(self):	CODE
LOW	tests/test_hitl.py	479	def test_format_approval_prompt_multiple(self):	CODE
LOW	tests/test_hitl.py	517	def test_should_auto_approve_run_in_background_no_allowlist(self):	CODE
LOW	tests/test_hitl.py	532	def test_should_auto_approve_config_true(self):	CODE
LOW	tests/test_hitl.py	545	def test_should_auto_approve_allowlist_match(self):	CODE
LOW	tests/test_hitl.py	586	def test_try_resolve_no_pending(self):	CODE
LOW	tests/test_hitl.py	594	async def test_reply_timeout_returns_none(self):	CODE
LOW	tests/test_hitl.py	639	def test_prompt_fn_not_called_for_auto_approve(self):	CODE
LOW	tests/test_hitl.py	665	def test_prompt_fn_not_called_for_non_execute(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	32	def test_returns_tool_message(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	64	def test_content_includes_retry_guidance(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	83	def test_success_passes_through(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	93	def test_command_passes_through(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	102	def test_exception_returns_error_tool_message(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	114	def test_exception_does_not_propagate(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	122	def test_keyboard_interrupt_propagates(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	130	def test_various_exception_types(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	152	async def test_success_passes_through(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	187	async def test_exception_does_not_propagate(self):	CODE
LOW⚡	tests/test_tool_error_handler.py	195	async def test_keyboard_interrupt_propagates(self):	CODE
LOW	tests/test_tool_error_handler.py	44	def test_content_includes_tool_name(self):	CODE
LOW	tests/test_tool_error_handler.py	53	def test_content_includes_traceback(self):	CODE
LOW	tests/test_tool_error_handler.py	163	async def test_command_passes_through(self):	CODE
LOW	tests/test_tool_error_handler.py	174	async def test_exception_returns_error_tool_message(self):	CODE
LOW⚡	tests/test_ccproxy_manager.py	99	def test_uses_health_live_endpoint(self, mock_get):	CODE
LOW⚡	tests/test_ccproxy_manager.py	210	def test_writes_codex_mapping_override(self, tmp_path):	CODE
LOW	tests/test_ccproxy_manager.py	174	def test_passes_generated_config(self, mock_popen, mock_running, tmp_path):	CODE
LOW	tests/test_ccproxy_manager.py	190	def test_config_write_failure_starts_without_config(	CODE
LOW	tests/test_ccproxy_manager.py	339	def test_oauth_mode_raises_no_binary(self, mock_avail):	CODE
LOW	tests/test_ccproxy_manager.py	351	def test_oauth_mode_raises_no_auth(self, mock_avail, mock_auth):	CODE
LOW	tests/test_ccproxy_manager.py	362	def test_openai_oauth_mode_starts(	CODE
LOW	tests/test_ccproxy_manager.py	382	def test_both_oauth_starts_both(	CODE
LOW	tests/test_ccproxy_manager.py	401	def test_openai_oauth_raises_no_binary_editable(self, mock_avail, mock_edit):	CODE
2394 more matches not shown…

Excessive Try-Catch Wrapping482 hits · 447 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/test_tool_error_handler.py	68	except Exception:	CODE
LOW	tests/test_async_watcher_middleware.py	25	except Exception:	CODE
LOW	tests/test_async_watcher_middleware.py	33	except Exception:	CODE
LOW	tests/conftest.py	137	except Exception:	CODE
LOW	tests/test_background_middleware.py	52	except Exception:	CODE
LOW	tests/test_observation_memory.py	479	except Exception as exc:	CODE
MEDIUM	tests/test_stream_utils.py	41	content = '#!/usr/bin/env python3\n"""\nSkill Packager\n"""\n\nprint(f"Error: not found")'	CODE
LOW	tests/test_bus_integration.py	23	except Exception:	CODE
LOW⚡	tests/test_background.py	44	except Exception:	CODE
LOW	tests/test_stream_recovery.py	65	except Exception:	CODE
LOW⚡	EvoScientist/sessions.py	460	except Exception: # pragma: no cover - defensive (config import errors)	CODE
LOW⚡	EvoScientist/sessions.py	531	except Exception as exc:	CODE
LOW	EvoScientist/sessions.py	238	except Exception as exc: # pragma: no cover - defensive	CODE
LOW	EvoScientist/sessions.py	343	except Exception as exc:	CODE
LOW	EvoScientist/sessions.py	714	except Exception as exc:	CODE
LOW	EvoScientist/sessions.py	1766	except Exception:	CODE
LOW⚡	EvoScientist/sessions.py	1335	except Exception:	STRING
LOW	EvoScientist/sessions.py	1275	except Exception: # pragma: no cover - never let UI break sweep	STRING
LOW	EvoScientist/sessions.py	1520	except Exception:	STRING
LOW	EvoScientist/sessions.py	1656	except Exception:	STRING
LOW	EvoScientist/paths.py	140	except Exception:	CODE
LOW	EvoScientist/update_check.py	44	except Exception:	CODE
LOW	EvoScientist/update_check.py	57	except Exception:	CODE
LOW	EvoScientist/update_check.py	68	except Exception:	CODE
LOW	EvoScientist/background.py	133	except Exception:	CODE
LOW	EvoScientist/background.py	140	except Exception:	CODE
LOW	EvoScientist/backends.py	1022	except Exception:	CODE
LOW	EvoScientist/backends.py	1035	except Exception:	CODE
LOW	EvoScientist/ccproxy_manager.py	74	except Exception:	CODE
LOW⚡	EvoScientist/ccproxy_manager.py	166	except Exception as exc:	CODE
LOW	EvoScientist/ccproxy_manager.py	283	except Exception:	CODE
LOW	EvoScientist/stt.py	133	except Exception as e:	CODE
LOW	EvoScientist/middleware/context_overflow.py	36	except Exception as exc:	CODE
LOW	EvoScientist/middleware/context_overflow.py	54	except Exception as exc:	CODE
LOW	EvoScientist/middleware/async_watcher.py	74	except Exception:	CODE
LOW	EvoScientist/middleware/async_watcher.py	107	except Exception:	CODE
LOW	EvoScientist/middleware/memory.py	458	except Exception as e:	CODE
LOW	EvoScientist/middleware/memory.py	475	except Exception as e:	CODE
LOW	EvoScientist/middleware/model_fallback.py	91	except Exception:	CODE
LOW	EvoScientist/middleware/model_fallback.py	291	except Exception as fb_exc:	CODE
LOW	EvoScientist/middleware/model_fallback.py	385	except Exception as exc:	CODE
LOW	EvoScientist/middleware/model_fallback.py	403	except Exception as exc:	CODE
LOW	EvoScientist/middleware/tool_selector.py	135	except Exception as exc:	CODE
LOW	EvoScientist/middleware/tool_selector.py	185	except Exception as exc:	CODE
LOW	EvoScientist/middleware/configurable_model.py	60	except Exception:	CODE
LOW	EvoScientist/middleware/configurable_model.py	158	except Exception:	CODE
LOW	EvoScientist/middleware/configurable_model.py	186	except Exception:	CODE
LOW	EvoScientist/middleware/error_normalization.py	213	except Exception as exc:	CODE
LOW	EvoScientist/middleware/error_normalization.py	226	except Exception as exc:	CODE
LOW	EvoScientist/middleware/background.py	28	except Exception:	CODE
LOW	EvoScientist/middleware/utils.py	42	except Exception:	CODE
LOW	EvoScientist/middleware/scheduler.py	72	except Exception as e:	CODE
LOW	EvoScientist/middleware/scheduler.py	89	except Exception as e:	CODE
LOW⚡	EvoScientist/middleware/scheduler.py	128	except Exception as e:	CODE
LOW	EvoScientist/middleware/scheduler.py	162	except Exception:	CODE
LOW	EvoScientist/middleware/memory_lifecycle.py	82	except Exception:	CODE
LOW	EvoScientist/middleware/memory_lifecycle.py	112	except Exception:	CODE
LOW	EvoScientist/middleware/tool_error_handler.py	48	except Exception as exc:	CODE
LOW	EvoScientist/middleware/tool_error_handler.py	60	except Exception as exc:	CODE
LOW	EvoScientist/tools/skills_manager.py	509	except Exception:	CODE
422 more matches not shown…

Unused Imports416 hits · 389 pts

Severity	File	Line	Context
LOW	tests/test_serde_default_rich_exception.py	17	CODE
LOW	tests/test_serve_agent_holder.py	9	CODE
LOW	tests/test_async_watcher_middleware.py	8	CODE
LOW	tests/test_channel_notification_origin.py	4	CODE
LOW	tests/stream_v3_fakes.py	3	CODE
LOW	tests/test_thread_selector.py	3	CODE
LOW	tests/test_cli_resume_flag.py	3	CODE
LOW	tests/test_configurable_model_middleware.py	9	CODE
LOW	tests/test_wechat_channel.py	240	CODE
LOW	tests/test_wechat_channel.py	245	CODE
LOW	tests/test_async_subagent_swap.py	8	CODE
LOW	tests/test_autoskills.py	1	CODE
LOW	tests/test_async_subagent_factory.py	10	CODE
LOW	tests/test_observation_memory.py	1	CODE
LOW	tests/test_llm.py	10	CODE
LOW	tests/test_file_mentions.py	3	CODE
LOW	tests/test_langgraph_schema_generator_silenced.py	11	CODE
LOW	tests/test_error_normalization_middleware.py	10	CODE
LOW	tests/test_langgraph_dev_deploy_mode.py	9	CODE
LOW	tests/test_agent_loader.py	3	CODE
LOW	tests/test_load_subagents.py	8	CODE
LOW	tests/test_langgraph_dev_http.py	6	CODE
LOW	tests/test_langgraph_dev_workspace_sidecar.py	17	CODE
LOW	tests/test_cli_serve.py	3	CODE
LOW	tests/test_graph_gateway.py	3	CODE
LOW	tests/test_model_passthrough_patch.py	11	CODE
LOW	tests/test_subagent_summarize.py	10	CODE
LOW	tests/test_ollama_discovery.py	9	CODE
LOW	tests/test_langgraph_manager.py	8	CODE
LOW	tests/test_cli_channel_bus_mode.py	3	CODE
LOW	tests/test_stream_cancel.py	3	CODE
LOW	tests/test_agent_mcp_cache.py	3	CODE
LOW	tests/test_profile_memory_middleware.py	1	CODE
LOW	tests/test_gateway_background_runs.py	1	CODE
LOW	tests/test_tui_widgets.py	7	CODE
LOW	tests/test_model_fallback.py	7	CODE
LOW	tests/test_diff_format.py	3	CODE
LOW	tests/test_resume_hint.py	3	CODE
LOW	tests/fakes.py	3	CODE
LOW	tests/test_stt.py	7	CODE
LOW	tests/test_channel_command_ui.py	1	CODE
LOW	tests/test_status_bar.py	3	CODE
LOW	tests/test_runtime_context_middleware.py	1	CODE
LOW	tests/test_tui_banner_position.py	17	CODE
LOW	tests/test_channel_comprehensive.py	15	CODE
LOW	tests/test_cli_deploy.py	12	CODE
LOW	tests/test_code_interpreter_middleware.py	10	CODE
LOW	EvoScientist/_winloop.py	26	CODE
LOW	EvoScientist/EvoScientist.py	42	CODE
LOW	EvoScientist/paths.py	3	CODE
LOW	EvoScientist/update_check.py	8	CODE
LOW	EvoScientist/background.py	17	CODE
LOW	EvoScientist/__init__.py	8	CODE
LOW	EvoScientist/ccproxy_manager.py	11	CODE
LOW	EvoScientist/stt.py	17	CODE
LOW	EvoScientist/middleware/context_overflow.py	10	CODE
LOW	EvoScientist/middleware/code_interpreter.py	30	CODE
LOW	EvoScientist/middleware/async_watcher.py	21	CODE
LOW	EvoScientist/middleware/memory.py	11	CODE
LOW	EvoScientist/middleware/model_fallback.py	14	CODE
356 more matches not shown…

Modern Structural Boilerplate129 hits · 134 pts

Severity	File	Line	Snippet	Context
LOW⚡	tests/fakes.py	116	def update_status_after_compact(self, tokens_after: int) -> None:	CODE
LOW	EvoScientist/sessions.py	1120	async def _set_user_version(conn: aiosqlite.Connection, version: int) -> None:	STRING
LOW⚡	EvoScientist/EvoScientist.py	88	def set_active_config(cfg) -> None:	CODE
LOW	EvoScientist/EvoScientist.py	216	def set_chat_model_instance(instance, key: tuple[str \| None, str \| None]) -> None:	CODE
LOW	EvoScientist/paths.py	11	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/paths.py	145	def set_workspace_root(path: str \| Path) -> None:	CODE
LOW	EvoScientist/paths.py	208	def set_active_workspace(path: str \| Path) -> None:	CODE
LOW	EvoScientist/update_check.py	16	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/background.py	33	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/utils.py	17	logger = logging.getLogger(__name__)	CODE
LOW⚡	EvoScientist/ccproxy_manager.py	21	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/stt.py	23	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/context_overflow.py	21	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/async_watcher.py	32	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/memory.py	38	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/model_fallback.py	26	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/model_fallback.py	65	def set_ui_emit(fn: Callable[[str, str], None] \| None) -> None:	CODE
LOW	EvoScientist/middleware/model_fallback.py	109	def set_fallback_chain(chain: list[tuple[str, str]]) -> None:	CODE
LOW	EvoScientist/middleware/tool_selector.py	32	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/configurable_model.py	44	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/__init__.py	41	__all__ = [	CODE
LOW⚡	EvoScientist/middleware/ask_user.py	37	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/memory_lifecycle.py	23	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/middleware/tool_error_handler.py	33	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/tools/__init__.py	11	__all__ = [	CODE
LOW	EvoScientist/memory/__init__.py	34	__all__ = [	CODE
LOW	EvoScientist/memory/scheduler.py	21	logger = logging.getLogger(__name__)	CODE
LOW⚡	EvoScientist/memory/agents/memory_worker.py	34	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/memory/agents/__init__.py	9	__all__ = [	CODE
LOW	EvoScientist/memory/agents/observation_linker.py	23	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/memory/observations/tools.py	31	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/memory/observations/__init__.py	40	__all__ = [	CODE
LOW	EvoScientist/config/__init__.py	30	__all__ = [	CODE
LOW	EvoScientist/config/onboard/prompter.py	115	__all__ = [	CODE
LOW	EvoScientist/config/onboard/constants.py	43	__all__ = [	CODE
LOW	EvoScientist/config/onboard/__init__.py	34	__all__ = ["run_onboard"]	CODE
LOW	EvoScientist/deploy/__init__.py	22	__all__ = ["server"]	CODE
LOW⚡	EvoScientist/mcp/registry.py	27	logger = logging.getLogger(__name__)	CODE
LOW⚡	EvoScientist/mcp/client.py	22	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/mcp/__init__.py	29	__all__ = [	CODE
LOW⚡	EvoScientist/cli/rich_command_ui.py	226	def update_status_after_compact(self, input_tokens: int) -> None:	CODE
LOW	EvoScientist/cli/async_notifier.py	103	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/cli/tui_interactive.py	3052	def _set_status_usage_baseline(self, input_tokens: int) -> None:	CODE
LOW	EvoScientist/cli/tui_interactive.py	3063	def update_status_after_compact(self, tokens_after: int) -> None:	CODE
LOW	EvoScientist/cli/tui_interactive.py	3089	def _set_status_streaming_text(self, text: str \| None) -> None:	CODE
LOW	EvoScientist/cli/channel.py	102	def _set_channel_response(msg_id: str, response: str) -> None:	CODE
LOW	EvoScientist/cli/__init__.py	15	__all__ = [	CODE
LOW	EvoScientist/cli/interactive.py	518	def _set_status_streaming_text(text: str \| None) -> None:	CODE
LOW	EvoScientist/cli/clipboard.py	29	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/cli/widgets/ask_user_widget.py	26	logger = logging.getLogger(__name__)	CODE
LOW	EvoScientist/cli/widgets/ask_user_widget.py	131	def set_future(self, future: asyncio.Future) -> None:	CODE
LOW⚡	EvoScientist/cli/widgets/ask_user_widget.py	340	def _update_choices(self) -> None:	CODE
LOW	EvoScientist/cli/widgets/model_picker.py	259	def _update_filter(self) -> None:	CODE
LOW	EvoScientist/cli/widgets/model_picker.py	272	def _update_rows(self) -> None:	CODE
LOW	EvoScientist/cli/widgets/subagent_widget.py	84	def update_name(self, name: str, description: str = "") -> None:	STRING
LOW	EvoScientist/cli/widgets/subagent_widget.py	219	def _update_visibility(self) -> None:	CODE
LOW	EvoScientist/cli/widgets/summarization_widget.py	121	def set_content(self, text: str) -> None:	CODE
LOW	EvoScientist/cli/widgets/mcp_loader_widget.py	80	def update_server(self, name: str, state: str, detail: str = "") -> None:	CODE
LOW	EvoScientist/cli/widgets/__init__.py	20	__all__ = [	CODE
LOW	EvoScientist/cli/widgets/mcp_browser.py	155	def _update_display(self) -> None:	CODE
69 more matches not shown…

Deep Nesting152 hits · 120 pts

Severity	File	Line	Context
LOW	tests/test_async_watcher_middleware.py	18	CODE
LOW	tests/test_event_loop.py	26	CODE
LOW	EvoScientist/sessions.py	465	CODE
LOW	EvoScientist/sessions.py	547	CODE
LOW	EvoScientist/sessions.py	1535	CODE
LOW	EvoScientist/background.py	234	CODE
LOW	EvoScientist/backends.py	71	CODE
LOW	EvoScientist/backends.py	413	CODE
LOW	EvoScientist/backends.py	685	CODE
LOW	EvoScientist/backends.py	720	CODE
LOW	EvoScientist/backends.py	751	CODE
LOW	EvoScientist/backends.py	989	CODE
LOW	EvoScientist/backends.py	1179	CODE
LOW	EvoScientist/utils.py	21	CODE
LOW	EvoScientist/utils.py	63	CODE
LOW	EvoScientist/ccproxy_manager.py	55	CODE
LOW	EvoScientist/middleware/ask_user.py	245	CODE
LOW	EvoScientist/tools/skills_manager.py	465	CODE
LOW	EvoScientist/tools/skills_manager.py	642	CODE
LOW	EvoScientist/tools/skills_manager.py	766	CODE
LOW	EvoScientist/tools/skill_manager.py	9	CODE
LOW	EvoScientist/llm/models.py	427	CODE
LOW	EvoScientist/llm/patches.py	38	CODE
LOW	EvoScientist/llm/patches.py	82	CODE
LOW	EvoScientist/llm/patches.py	341	CODE
LOW	EvoScientist/llm/patches.py	378	CODE
LOW	EvoScientist/llm/patches.py	413	CODE
LOW	EvoScientist/memory/autoskills/candidates.py	124	CODE
LOW	EvoScientist/config/onboard/steps.py	1073	CODE
LOW	EvoScientist/config/onboard/wizard.py	66	CODE
LOW	EvoScientist/config/onboard/wizard.py	151	CODE
LOW	EvoScientist/config/onboard/wizard.py	474	CODE
LOW	EvoScientist/config/onboard/channels.py	24	CODE
LOW	EvoScientist/config/onboard/channels.py	819	CODE
LOW	EvoScientist/config/onboard/channels.py	838	CODE
LOW	EvoScientist/config/onboard/helpers.py	343	CODE
LOW	EvoScientist/config/onboard/helpers.py	638	CODE
LOW	EvoScientist/stream/events.py	740	CODE
LOW	EvoScientist/stream/events.py	794	CODE
LOW	EvoScientist/stream/events.py	505	CODE
LOW	EvoScientist/stream/display.py	517	CODE
LOW	EvoScientist/stream/display.py	899	CODE
LOW	EvoScientist/stream/display.py	1183	CODE
LOW	EvoScientist/stream/display.py	1282	CODE
LOW	EvoScientist/stream/display.py	1347	CODE
LOW	EvoScientist/stream/utils.py	140	CODE
LOW	EvoScientist/stream/summarization.py	15	CODE
LOW	EvoScientist/stream/v3_payloads.py	56	CODE
LOW	EvoScientist/stream/tool_results.py	18	CODE
LOW	EvoScientist/stream/diff_format.py	66	CODE
LOW	EvoScientist/stream/state.py	364	CODE
LOW	EvoScientist/stream/state.py	152	CODE
LOW	EvoScientist/mcp/registry.py	162	CODE
LOW	EvoScientist/mcp/registry.py	289	CODE
LOW	EvoScientist/mcp/client.py	418	CODE
LOW	EvoScientist/mcp/client.py	492	CODE
LOW	EvoScientist/mcp/client.py	616	CODE
LOW	EvoScientist/cli/file_mentions.py	414	CODE
LOW	EvoScientist/cli/rich_command_ui.py	112	CODE
LOW	EvoScientist/cli/tui_interactive.py	276	CODE
92 more matches not shown…

Cross-Language Confusion21 hits · 118 pts

Severity	File	Line	Snippet	Context
HIGH⚡	tests/test_background_middleware.py	133	out = run_in_background.invoke({"command": "cat /etc/hosts && cat ../x"})	CODE
HIGH⚡	tests/test_background_middleware.py	135	assert captured["command"] == "cat /etc/hosts && cat ../x" # no ./ rewrite	CODE
HIGH	tests/test_langgraph_dev_workspace_sidecar.py	83	'{"workspace": null}', # workspace present but null → Path(None) TypeError	CODE
HIGH⚡	tests/test_backends.py	110	result = validate_command("cd /etc && cat passwd")	CODE
HIGH⚡	tests/test_backends.py	138	assert validate_command("cd /etc && ls", dangerous=True) is None	CODE
HIGH⚡	tests/test_backends.py	1281	"cat /data/file.txt && ssh host 'ls /home/username/project'",	CODE
HIGH⚡	tests/test_backends.py	1288	== "cat ./data/file.txt && ssh host 'ls /home/username/project'"	CODE
HIGH⚡	tests/test_backends.py	1412	command = "cat /data/file.txt && ssh host 'ls /home/username/project'"	CODE
HIGH⚡	tests/test_backends.py	1419	== "cat ./data/file.txt && ssh host 'ls /home/username/project'"	CODE
HIGH⚡	tests/test_backends.py	1547	result = validate_command("echo ok && chmod 777 file")	CODE
HIGH⚡	tests/test_backends.py	1563	assert validate_command("mkdir build && cd build") is None	CODE
HIGH	tests/test_backends.py	1145	command = f"mkdir -p {tmp_workspace}/test-sanitized && echo ok"	CODE
HIGH	tests/test_backends.py	1319	command = "echo __EVOSCI_SSH_REMOTE_0__ && ssh host 'ls /home'"	CODE
HIGH⚡	tests/test_backends.py	1546	"""chmod after && should be caught."""	STRING
HIGH⚡	tests/test_backends.py	1562	"""Normal && chains should be fine."""	STRING
HIGH⚡	EvoScientist/backends.py	364	"for example: ssh host 'cd /home/user/project && python train.py'."	CODE
HIGH	EvoScientist/backends.py	245	>>> [(i, h, r, e) for _, i, h, r, e in _ssh_invocations("cat x && ssh -p 22 host 'pwd'")]	STRING
HIGH	EvoScientist/backends.py	292	>>> _ssh_remote_command_spans("cat /tmp/x && ssh host 'pwd'")	STRING
HIGH	EvoScientist/middleware/error_normalization.py	10	``{"message": …, "status_code": …, "body": …, "headers": null,	STRING
HIGH	EvoScientist/middleware/error_normalization.py	11	"raw_response": null, "data": {…}}`` with no ``error`` / ``class`` /	STRING
HIGH	EvoScientist/langgraph_dev/manager.py	215	``{"workspace": null}`` or ``{"workspace": []}`` would parse fine, pass	STRING

Structural Annotation Overuse49 hits · 91 pts

Severity	File	Line	Snippet	Context
LOW⚡	EvoScientist/prompts.py	183	## Step 5: Write Report	COMMENT
LOW⚡	EvoScientist/prompts.py	189	## Step 6: Verify	COMMENT
LOW	EvoScientist/prompts.py	105	## Step 3: Execute & Debug	COMMENT
LOW	EvoScientist/prompts.py	130	## Step 4: Evaluate & Iterate	COMMENT
LOW⚡	EvoScientist/prompts.py	88	return "\n".join(["## Step 1: Intake & Scope", *bullets])	STRING
LOW⚡	EvoScientist/prompts.py	91	_EXPERIMENT_WORKFLOW_EXECUTION = """## Step 2: Plan (Recommended Structure)	STRING
LOW	EvoScientist/config/onboard/helpers.py	644	# Step 1: Validate	COMMENT
LOW	EvoScientist/config/onboard/helpers.py	660	# Step 2: Offer to install	COMMENT
LOW	EvoScientist/skills/find-skills/SKILL.md	20	## Step 1: Search for Skills	COMMENT
LOW	EvoScientist/skills/find-skills/SKILL.md	42	## Step 2: Present Options	COMMENT
LOW	EvoScientist/skills/find-skills/SKILL.md	50	## Step 3: Install	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	206	### Step 1: Spawn all runs (with-skill AND baseline) using `task` tool	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	236	### Step 2: While runs are in progress, draft assertions	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	242	### Step 3: As runs complete, capture timing data	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	254	### Step 4: Grade, aggregate, and launch the viewer	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	287	### Step 5: Read the feedback	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	330	### Step 1: Generate trigger eval queries	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	347	### Step 2: Review with user	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	356	### Step 3: Run the optimization loop	COMMENT
LOW	EvoScientist/skills/skill-creator/SKILL.md	377	### Step 4: Apply the result	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/grader.md	21	### Step 1: Read the Transcript	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/grader.md	27	### Step 2: Examine Output Files	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/grader.md	33	### Step 3: Evaluate Each Assertion	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/grader.md	43	### Step 4: Extract and Verify Claims	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/grader.md	61	### Step 5: Read User Notes	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/grader.md	68	### Step 6: Critique the Evals	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/grader.md	81	### Step 7: Write Grading Results	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/grader.md	101	### Step 8: Read Executor Metrics and Timing	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	22	### Step 1: Read Both Outputs	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	29	### Step 2: Understand the Task	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	37	### Step 3: Generate Evaluation Rubric	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	60	### Step 4: Evaluate Each Output Against the Rubric	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	68	### Step 5: Check Assertions (if provided)	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	77	### Step 6: Determine the Winner	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/comparator.md	87	### Step 7: Write Comparison Results	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	23	### Step 1: Read Comparison Result	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	29	### Step 2: Read Both Skills	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	39	### Step 3: Read Both Transcripts	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	49	### Step 4: Analyze Instruction Following	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	59	### Step 5: Identify Winner Strengths	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	69	### Step 6: Identify Loser Weaknesses	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	77	### Step 7: Generate Improvement Suggestions	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	87	### Step 8: Write Analysis Results	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	205	### Step 1: Read Benchmark Data	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	211	### Step 2: Analyze Per-Assertion Patterns	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	220	### Step 3: Analyze Cross-Eval Patterns	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	227	### Step 4: Analyze Metrics Patterns	COMMENT
LOW⚡	EvoScientist/skills/skill-creator/agents/analyzer.md	234	### Step 5: Generate Notes	COMMENT
LOW	EvoScientist/skills/skill-creator/agents/analyzer.md	249	### Step 6: Write Notes	COMMENT

Docstring Block Structure12 hits · 60 pts

Severity	File	Line	Snippet	Context
HIGH	EvoScientist/__init__.py	45	Lazily import and cache package-level attributes. Args: name: The attribute name to look up. Returns:	STRING
HIGH	EvoScientist/ccproxy_manager.py	214	Start ccproxy serve as a background process. Args: port: Port number for the proxy server. Returns:	STRING
HIGH	EvoScientist/middleware/model_fallback.py	238	Walk the fallback chain, trying each model until one succeeds. Shared implementation for both sync and async middle	STRING
HIGH	EvoScientist/middleware/model_fallback.py	340	Check non-fallbackable conditions, then delegate to ``_try_fallbacks``. Args: primary_exc: The exception ra	STRING
HIGH	EvoScientist/tools/skill_manager.py	16	Manage user-installable skills: install from GitHub or local path, list available skills, browse remote skills, get deta	STRING
HIGH	EvoScientist/llm/models.py	432	Get a chat model instance. Args: model: Model name (short name like 'claude-sonnet-4-6' or full ID	STRING
HIGH	EvoScientist/subagents/_factory.py	23	Build a deployable graph for the ``name`` sub-agent defined in yaml. Args: name: The sub-agent's key in one	STRING
HIGH	EvoScientist/config/settings.py	612	Coerce a value to the expected field type. Args: value: The value to coerce. field_type: The target	STRING
HIGH	EvoScientist/langgraph_dev/manager.py	552	Start langgraph dev as a background subprocess. Args: workspace_dir: Working directory for the subprocess (	STRING
HIGH	EvoScientist/commands/implementation/model.py	10	Parse model name and provider from argument list. Args: args: Non-empty argument list (model_name [provider	STRING
HIGH	EvoScientist/channels/imessage/targets.py	150	Parse an iMessage target string. Supports formats: - chat_id:123 - chat_guid:abc-def - chat_identifier:	STRING
HIGH	EvoScientist/channels/imessage/rpc_client.py	127	Send a JSON-RPC request and wait for response. Args: method: RPC method name params: Me	STRING

Modern AI Meta-Vocabulary9 hits · 32 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/test_langgraph_manager.py	279	# ensure_langgraph_dev — high-level orchestration	COMMENT
MEDIUM	…erature/SIGIR2026_public_arxiv_systematic_survey_zh.md	126	## 5. Search Agents、RAG 与推理：从单轮检索到轨迹级策略学习	COMMENT
MEDIUM	…erature/SIGIR2026_public_arxiv_systematic_survey_zh.md	148	### 5.4 长视频与时空 grounding 说明 agentic reasoning 已跨出文本	COMMENT
MEDIUM	…erature/SIGIR2026_public_arxiv_systematic_survey_en.md	128	## 5. Search Agents, RAG, and Reasoning: From Single-Turn Retrieval to Trajectory-Level Policy Learning	COMMENT
MEDIUM	EvoScientist/sessions.py	652	# a multi-agent DB where a third-party tool shares the same	COMMENT
MEDIUM	EvoScientist/backends.py	31	# If the agent hallucinates an absolute system path, we block it.	COMMENT
MEDIUM⚡	EvoScientist/ccproxy_manager.py	332	# High-level orchestration	COMMENT
MEDIUM	EvoScientist/middleware/code_interpreter.py	69	# Multi-agent orchestration is the killer use case: ``Promise.all`` over	COMMENT
MEDIUM⚡	EvoScientist/langgraph_dev/manager.py	897	# High-level orchestration	COMMENT

Over-Commented Block37 hits · 28 pts

Severity	File	Line	Snippet	Context
LOW	tests/test_stt.py	261	# EvoSci config set stt_enabled true	COMMENT
LOW	EvoScientist/EvoScientist.py	61	# _ensure_config(new_cfg) has overwritten the active config — causing	COMMENT
LOW	EvoScientist/llm/context_window.py	41	# Order matters — first match wins; put more specific patterns first.	COMMENT
LOW	EvoScientist/llm/models.py	121	_FALSEY_ENV_VALUES = {"0", "false", "no", "off"}	COMMENT
LOW	EvoScientist/llm/models.py	501	if _is_openai_proxy:	COMMENT
LOW	EvoScientist/llm/models.py	561		COMMENT
LOW	EvoScientist/llm/patches.py	741	# ``{"description": docstring}`` — the endpoint still ends up in the	COMMENT
LOW	EvoScientist/llm/patches.py	781	_langgraph_schema_silenced_patched = True	COMMENT
LOW	EvoScientist/llm/patches.py	921	# Empty-string fallback for ALL DeepSeek models (not just	COMMENT
LOW	EvoScientist/llm/patches.py	941	# Without this, async sub-agents stay on the model their graph was compiled	COMMENT
LOW	EvoScientist/llm/errors.py	101	for.	COMMENT
LOW	EvoScientist/llm/errors.py	161	# Kept here rather than imported from ``models.py`` to keep the	COMMENT
LOW	EvoScientist/subagents/_factory.py	81		COMMENT
LOW	EvoScientist/config/settings.py	181	# LLM Settings	COMMENT
LOW	EvoScientist/config/settings.py	201	enable_async_subagents: bool = True	COMMENT
LOW	EvoScientist/config/settings.py	221	# back to UTC if it can't be determined; set e.g. "Europe/London" to pin one.	COMMENT
LOW	EvoScientist/config/settings.py	241	# each count as 1) before raising GraphRecursionError. Resets on every	COMMENT
LOW	EvoScientist/config/settings.py	281	# Workspace Settings	COMMENT
LOW	EvoScientist/config/settings.py	421		COMMENT
LOW	EvoScientist/mcp/client.py	21		COMMENT
LOW	EvoScientist/mcp/client.py	101	# =============================================================================	COMMENT
LOW	EvoScientist/cli/async_notifier.py	61	# drains for any current_thread_id (back-compat for direct callers).	COMMENT
LOW	EvoScientist/cli/tui_interactive.py	701	# whose workspace differs from the one the langgraph dev	COMMENT
LOW	EvoScientist/cli/channel.py	461		COMMENT
LOW	EvoScientist/cli/interactive.py	761	# in a worker thread so the asyncio event loop keeps	COMMENT
LOW	EvoScientist/cli/commands.py	1541	console.print("[dim]Press Ctrl+C to stop.[/dim]\n")	COMMENT
LOW	EvoScientist/langgraph_dev/__init__.py	21	# loop that serves runs. Forcing the Proactor loop policy here — at import,	COMMENT
LOW	EvoScientist/langgraph_dev/main_graph.py	21	from langgraph.graph.state import CompiledStateGraph	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	241		COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	261	_PROCESS_WORKSPACE: Path \| None = None	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	481	_unlink_workspace_sidecar()	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	601	# (a) Our own previous langgraph dev (PID matches RUNTIME.pid_file) — kill it.	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	621	# is genuinely free so the upcoming bind() doesn't race a	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	661	# scans lines this subprocess writes — never a stale URL left in the	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	681	sub_env["EVOSCIENTIST_WORKSPACE_DIR"] = str(workspace_dir)	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	701	# ``EvoSci`` / ``EvoSci serve``. The CLI's main agent already loaded	COMMENT
LOW	EvoScientist/langgraph_dev/manager.py	921	background workers will fail.	COMMENT

Self-Referential Comments8 hits · 27 pts

Severity	File	Line	Snippet	Context
MEDIUM⚡	tests/test_skills_manager.py	748	# Create a fake repo structure	COMMENT
MEDIUM	tests/test_event_loop.py	181	# Create a fresh loop	COMMENT
MEDIUM	tests/test_sessions.py	2817	# Create a valid but empty SQLite DB (no checkpoints table).	COMMENT
MEDIUM⚡	tests/test_mcp_client.py	1300	# Create a fake executable in a temp bin dir	COMMENT
MEDIUM	tests/test_mcp_client.py	124	# Create a fake executable next to sys.executable	COMMENT
MEDIUM	tests/test_channel_debug.py	177	# Create a minimal concrete channel	COMMENT
MEDIUM	EvoScientist/utils.py	91	# Create a formatted display of the prompt	COMMENT
MEDIUM	EvoScientist/channels/standalone.py	96	# Create a lightweight manager for the consumer to use	COMMENT

Redundant / Tautological Comments12 hits · 16 pts

Severity	File	Line	Snippet	Context
LOW	EvoScientist/tools/skills_manager.py	500	# Check if local path exists	COMMENT
LOW	EvoScientist/tools/skills_manager.py	815	# Check if it's a built-in skill (read-only, cannot be uninstalled)	COMMENT
LOW	EvoScientist/config/settings.py	197	# Set False to run fully in-process — saves the startup cost in scenarios	COMMENT
LOW	EvoScientist/config/onboard/steps.py	1288	# Check if any selected servers require npx	COMMENT
LOW	EvoScientist/stream/display.py	853	# Check if any sub-agent is active	COMMENT
LOW	EvoScientist/mcp/client.py	682	# Check if any pattern contains wildcard characters	COMMENT
LOW	EvoScientist/commands/implementation/mcp_install.py	70	# Check if it's a tag — fall through to browser	COMMENT
LOW	EvoScientist/skills/skill-creator/scripts/run_eval.py	88	# Check if the model called load_skill with the right skill name	COMMENT
LOW	EvoScientist/skills/skill-creator/scripts/init_skill.py	207	# Check if directory already exists	COMMENT
LOW	EvoScientist/channels/middleware.py	275	# Check if already has pending request	COMMENT
LOW	EvoScientist/channels/imessage/targets.py	185	# Check if remainder is a chat target	COMMENT
LOW	EvoScientist/channels/imessage/rpc_client.py	214	# Check if it's a response (has id)	COMMENT

AI Structural Patterns20 hits · 16 pts

Severity	File	Line	Context
LOW	tests/test_cli_serve.py	12	CODE
LOW	tests/test_cli_serve.py	46	CODE
LOW	tests/fakes.py	207	CODE
LOW	tests/test_cli_deploy.py	23	CODE
LOW	tests/test_cli_deploy.py	67	CODE
LOW	EvoScientist/middleware/memory.py	611	CODE
LOW	EvoScientist/middleware/memory.py	231	CODE
LOW	EvoScientist/stream/display.py	517	CODE
LOW	EvoScientist/stream/display.py	1282	CODE
LOW	EvoScientist/cli/tui_runtime.py	66	CODE
LOW	EvoScientist/cli/tui_interactive.py	1282	CODE
LOW	EvoScientist/cli/tui_backends.py	18	CODE
LOW	EvoScientist/cli/tui_backends.py	46	CODE
LOW	EvoScientist/cli/interactive.py	331	CODE
LOW	EvoScientist/cli/commands.py	75	CODE
LOW	EvoScientist/cli/commands.py	2026	CODE
LOW	EvoScientist/cli/commands.py	408	CODE
LOW	EvoScientist/channels/mixins.py	141	CODE
LOW	EvoScientist/channels/consumer.py	208	CODE
LOW	EvoScientist/channels/dingtalk/channel.py	319	CODE

Cross-File Repetition3 hits · 15 pts

Severity	File	Snippet	Context
HIGH	tests/test_background_middleware.py	cross-platform command that sleeps for seconds and exits 0.	STRING
HIGH	tests/test_background.py	cross-platform command that sleeps for seconds and exits 0.	STRING
HIGH	tests/test_backends.py	cross-platform command that sleeps for seconds and exits 0.	STRING

Verbosity Indicators8 hits · 11 pts

Severity	File	Line	Snippet	Context
LOW⚡	EvoScientist/prompts.py	183	## Step 5: Write Report	COMMENT
LOW⚡	EvoScientist/prompts.py	189	## Step 6: Verify	COMMENT
LOW	EvoScientist/prompts.py	105	## Step 3: Execute & Debug	COMMENT
LOW	EvoScientist/prompts.py	130	## Step 4: Evaluate & Iterate	COMMENT
LOW⚡	EvoScientist/prompts.py	88	return "\n".join(["## Step 1: Intake & Scope", *bullets])	STRING
LOW⚡	EvoScientist/prompts.py	91	_EXPERIMENT_WORKFLOW_EXECUTION = """## Step 2: Plan (Recommended Structure)	STRING
LOW	EvoScientist/config/onboard/helpers.py	644	# Step 1: Validate	COMMENT
LOW	EvoScientist/config/onboard/helpers.py	660	# Step 2: Offer to install	COMMENT

Fake / Example Data10 hits · 10 pts

Severity	File	Line	Snippet	Context
LOW	tests/test_dingtalk_channel.py	128	channel._access_token = "fake-token"	CODE
LOW⚡	tests/test_dingtalk_channel.py	250	channel._access_token = "fake-token"	CODE
LOW⚡	tests/test_feishu_channel.py	553	channel._access_token = "fake-token"	CODE
LOW	tests/test_feishu_channel.py	198	channel._access_token = "fake-token"	CODE
LOW	tests/test_feishu_channel.py	342	channel._access_token = "fake-token"	CODE
LOW	tests/test_feishu_channel.py	360	channel._access_token = "fake-token"	CODE
LOW	tests/test_feishu_channel.py	617	channel._access_token = "fake-token"	CODE
LOW⚡	tests/test_additional_channel_smoke.py	27	chat_id="user@example.com",	CODE
LOW⚡	tests/test_additional_channel_smoke.py	29	metadata={"chat_id": "user@example.com"},	CODE
LOW	EvoScientist/config/onboard/helpers.py	157	kwargs["placeholder"] = placeholder	CODE

AI Slop Vocabulary4 hits · 9 pts

Severity	File	Line	Snippet	Context
LOW	tests/test_llm.py	2188	# Should not raise, just return the payload as-is	COMMENT
MEDIUM	tests/test_langgraph_dev_http.py	112	# Ollama suffix — robust to future static Ollama entries in the registry.	COMMENT
MEDIUM⚡	EvoScientist/llm/patches.py	803	# azure-ignore is not sufficient). The only robust fix is to drop these items	COMMENT
LOW	EvoScientist/cli/tui_interactive.py	2164	# errors; callers just return so the send is dropped.	COMMENT

Dead Code3 hits · 5 pts

Severity	File	Line	Context
MEDIUM	tests/test_llm.py	1939	CODE
MEDIUM	tests/test_async_notifier.py	96	CODE
MEDIUM	tests/test_async_notifier.py	964	CODE

Analysis Overview

What These Metrics Mean

Score History

Severity Breakdown

Directory Score Breakdown

Pattern Findings